Wall clock time and date at job start Wed Apr 1 2020 05:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00054 * 2 1 4 4 C 1.46901 * 110.99672 * 123.95677 * 2 1 3 5 5 C 1.53002 * 109.47333 * 66.04585 * 4 2 1 6 6 N 1.46501 * 109.47058 * 180.02562 * 5 4 2 7 7 N 1.40066 * 126.04122 * 270.00131 * 6 5 4 8 8 C 1.30854 * 108.37129 * 180.02562 * 7 6 5 9 9 C 1.39766 * 108.31913 * 359.73657 * 8 7 6 10 10 C 1.35243 * 126.04481 * 89.99998 * 6 5 4 11 11 N 1.39489 * 126.21748 * 0.02562 * 10 6 5 12 12 C 1.34777 * 120.00209 * 179.97438 * 11 10 6 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.40186 * 119.99745 * 180.27816 * 14 12 11 16 16 C 1.40400 * 125.97490 * 359.43676 * 15 14 12 17 17 C 1.35239 * 107.86807 * 179.82641 * 16 15 14 18 18 N 1.34968 * 107.85970 * 0.43344 * 17 16 15 19 19 C 1.46494 * 125.98042 * 179.72489 * 18 17 16 20 20 C 1.50700 * 109.47219 * 124.97322 * 19 18 17 21 21 H 1.07995 * 120.00401 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99853 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00284 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99695 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47569 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47027 * 120.00242 * 24 22 20 27 27 H 1.48500 * 109.46907 * 239.99918 * 24 22 20 28 28 N 1.31208 * 125.96918 * 179.74638 * 15 14 12 29 29 H 1.08997 * 109.47624 * 296.04586 * 1 2 3 30 30 H 1.09007 * 109.47045 * 56.04856 * 1 2 3 31 31 H 1.09001 * 109.47594 * 176.04155 * 1 2 3 32 32 H 1.08996 * 109.47276 * 183.94802 * 3 2 1 33 33 H 1.08990 * 109.47412 * 303.95503 * 3 2 1 34 34 H 1.09009 * 109.46728 * 63.95631 * 3 2 1 35 35 H 1.09002 * 109.47076 * 306.04752 * 4 2 1 36 36 H 1.08995 * 109.46918 * 186.04730 * 4 2 1 37 37 H 1.09002 * 109.46903 * 60.00062 * 5 4 2 38 38 H 1.09000 * 109.46964 * 300.00331 * 5 4 2 39 39 H 1.08001 * 125.83965 * 180.02562 * 8 7 6 40 40 H 1.07992 * 126.08621 * 180.28382 * 9 8 7 41 41 H 0.97000 * 120.00241 * 0.02562 * 11 10 6 42 42 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 43 43 H 1.08006 * 126.06415 * 359.97438 * 16 15 14 44 44 H 1.08007 * 126.07479 * 180.15698 * 17 16 15 45 45 H 1.09000 * 109.47514 * 244.97784 * 19 18 17 46 46 H 1.09012 * 109.47100 * 4.97296 * 19 18 17 47 47 H 0.97000 * 120.00322 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.6313 -2.2427 0.9703 6 7 2.1558 -3.0065 2.1051 7 7 3.4173 -3.6105 2.1794 8 6 3.5245 -4.1999 3.3428 9 6 2.3396 -3.9882 4.0533 10 6 1.5074 -3.2531 3.2661 11 7 0.2213 -2.8274 3.5984 12 6 -0.3057 -3.1468 4.7970 13 8 0.3402 -3.8056 5.5890 14 7 -1.5485 -2.7359 5.1178 15 6 -2.0943 -3.0632 6.3669 16 6 -1.4652 -3.8182 7.3696 17 6 -2.3157 -3.9070 8.4174 18 7 -3.4450 -3.2436 8.0912 19 6 -4.6309 -3.0949 8.9383 20 6 -4.9568 -1.6318 9.0939 21 1 -4.3423 -0.8872 8.6099 22 6 -6.0396 -1.2438 9.8543 23 7 -6.7876 -2.1504 10.4441 24 14 -6.4431 0.5698 10.0477 25 1 -5.4548 1.3803 9.2917 26 1 -7.8063 0.8326 9.5206 27 1 -6.3887 0.9384 11.4852 28 7 -3.2846 -2.7222 6.8010 29 1 -0.3634 0.4512 0.9232 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3634 -1.0252 -0.0709 32 1 3.0827 1.3432 -0.0708 33 1 1.5898 1.9163 -0.8523 34 1 1.7044 1.8723 0.9234 35 1 1.5609 -0.3874 2.0628 36 1 3.0796 -0.6612 1.1756 37 1 2.0657 -2.6214 0.0451 38 1 0.5471 -2.3475 0.9322 39 1 4.3835 -4.7513 3.6956 40 1 2.1223 -4.3461 5.0488 41 1 -0.2941 -2.3021 2.9665 42 1 -2.0636 -2.2100 4.4862 43 1 -0.4765 -4.2494 7.3149 44 1 -2.1268 -4.4215 9.3480 45 1 -5.4743 -3.6078 8.4761 46 1 -4.4342 -3.5296 9.9184 47 1 -7.5491 -1.8774 10.9793 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365060171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:12 Heat of formation + Delta-G solvation = 140.181679 kcal Electronic energy + Delta-G solvation = -29529.846733 eV Core-core repulsion = 25365.831095 eV Total energy + Delta-G solvation = -4164.015639 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.75816 -42.10763 -40.84103 -38.69998 -36.52101 -36.13492 -35.29067 -34.40222 -32.78189 -30.99046 -30.14115 -29.67468 -28.55202 -28.50133 -25.62326 -25.25504 -23.98555 -22.72140 -22.48959 -21.97282 -21.21066 -21.17230 -19.46485 -18.78314 -18.63809 -18.00937 -17.24674 -16.97891 -16.72029 -16.58905 -16.37621 -16.06054 -15.97603 -15.62597 -15.52320 -15.17931 -14.63234 -14.56913 -14.35695 -14.27261 -13.90646 -13.81276 -13.68691 -13.42053 -13.02700 -12.95557 -12.73720 -12.69939 -12.63238 -12.36431 -12.28052 -12.18395 -12.01708 -11.79884 -11.58900 -11.39781 -11.06851 -10.71994 -10.04991 -9.78829 -9.48232 -9.28653 -9.00275 -8.32552 -6.46259 0.54770 0.65514 1.11363 1.37491 1.39127 1.46843 1.52152 1.62798 1.95091 2.02313 2.34220 2.35350 2.83646 2.99068 2.99611 3.46199 3.74524 3.91528 4.01523 4.13188 4.20296 4.25527 4.25981 4.42609 4.48591 4.55656 4.61015 4.67336 4.74202 4.75261 4.84974 4.90860 4.93909 4.97253 5.00505 5.01300 5.10611 5.30889 5.55262 5.60696 5.75179 5.82124 5.84123 5.89654 5.93748 6.02010 6.28447 6.47382 6.66079 6.75299 7.05189 7.14669 7.23755 8.75191 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.002188 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.779890 B =12795.933838 C =14689.588641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.549 5.549 3 C 0.023 3.977 4 C 0.046 3.954 5 C 0.133 3.867 6 N -0.383 5.383 7 N -0.310 5.310 8 C 0.064 3.936 9 C -0.300 4.300 10 C 0.322 3.678 11 N -0.639 5.639 12 C 0.725 3.275 13 O -0.558 6.558 14 N -0.624 5.624 15 C 0.283 3.717 16 C -0.289 4.289 17 C 0.058 3.942 18 N -0.343 5.343 19 C 0.272 3.728 20 C -0.545 4.545 21 H 0.053 0.947 22 C 0.018 3.982 23 N -0.921 5.921 24 Si 0.971 3.029 25 H -0.274 1.274 26 H -0.274 1.274 27 H -0.272 1.272 28 N -0.343 5.343 29 H 0.030 0.970 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.025 0.975 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.214 0.786 40 H 0.161 0.839 41 H 0.423 0.577 42 H 0.424 0.576 43 H 0.171 0.829 44 H 0.201 0.799 45 H 0.022 0.978 46 H 0.059 0.941 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.162 1.716 -20.540 26.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.274 5.274 3 C -0.125 4.125 4 C -0.083 4.083 5 C 0.012 3.988 6 N -0.171 5.171 7 N -0.132 5.132 8 C -0.121 4.121 9 C -0.332 4.332 10 C 0.101 3.899 11 N -0.291 5.291 12 C 0.424 3.576 13 O -0.432 6.432 14 N -0.276 5.276 15 C 0.028 3.972 16 C -0.320 4.320 17 C -0.091 4.091 18 N -0.125 5.125 19 C 0.153 3.847 20 C -0.583 4.583 21 H 0.071 0.929 22 C -0.182 4.182 23 N -0.559 5.559 24 Si 0.795 3.205 25 H -0.199 1.199 26 H -0.199 1.199 27 H -0.197 1.197 28 N -0.173 5.173 29 H 0.049 0.951 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.230 0.770 40 H 0.178 0.822 41 H 0.261 0.739 42 H 0.262 0.738 43 H 0.189 0.811 44 H 0.218 0.782 45 H 0.040 0.960 46 H 0.077 0.923 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.015 1.841 -21.551 27.520 hybrid contribution -1.046 1.175 1.414 2.116 sum 15.969 3.017 -20.136 25.876 Atomic orbital electron populations 1.22644 0.86128 1.03458 1.01610 1.61941 1.09148 1.14761 1.41525 1.22438 1.01107 0.87742 1.01195 1.22376 1.01097 0.92685 0.92157 1.21805 0.99966 0.89774 0.87268 1.48688 1.11790 1.44421 1.12211 1.77458 0.96843 1.17095 1.21805 1.24221 0.99212 0.97894 0.90778 1.21728 0.95333 1.11956 1.04184 1.17607 0.84863 0.98497 0.88918 1.41340 1.13728 1.56810 1.17178 1.15190 0.80700 0.80084 0.81640 1.90829 1.60215 1.42573 1.49543 1.41050 1.14902 1.56639 1.15002 1.18931 0.92383 0.98563 0.87318 1.21706 1.04250 1.12487 0.93603 1.23178 0.86483 0.97836 1.01568 1.48829 1.14477 1.38722 1.10503 1.19352 0.79778 0.97746 0.87816 1.21425 1.13301 0.91907 1.31678 0.92888 1.25727 0.95191 1.02807 0.94515 1.69995 1.18038 1.35191 1.32723 0.85312 0.78099 0.78871 0.78201 1.19851 1.19917 1.19677 1.77247 1.17335 1.25678 0.97080 0.95142 0.90070 0.89960 0.91126 0.89831 0.95664 0.94823 0.90731 0.87034 0.87413 0.76992 0.82151 0.73864 0.73792 0.81149 0.78187 0.95966 0.92294 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.32 127.69 1.19 1.26 16 2 N -0.55 -6.08 5.02 -948.85 -4.76 -10.84 16 3 C 0.02 0.23 9.57 127.69 1.22 1.45 16 4 C 0.05 0.59 5.28 86.30 0.46 1.04 16 5 C 0.13 1.65 6.18 86.38 0.53 2.18 16 6 N -0.38 -7.26 3.62 -344.98 -1.25 -8.51 16 7 N -0.31 -6.84 12.56 -57.08 -0.72 -7.55 16 8 C 0.06 1.32 12.01 85.21 1.02 2.35 16 9 C -0.30 -7.30 9.65 22.14 0.21 -7.08 16 10 C 0.32 6.96 7.66 131.32 1.01 7.97 16 11 N -0.64 -11.75 5.42 -322.31 -1.75 -13.50 16 12 C 0.73 18.69 8.50 179.05 1.52 20.22 16 13 O -0.56 -17.76 10.59 -4.01 -0.04 -17.80 16 14 N -0.62 -16.75 5.45 -321.24 -1.75 -18.50 16 15 C 0.28 10.50 8.11 133.32 1.08 11.58 16 16 C -0.29 -10.61 9.60 22.10 0.21 -10.40 16 17 C 0.06 2.16 11.44 83.52 0.96 3.12 16 18 N -0.34 -15.47 3.67 -351.84 -1.29 -16.76 16 19 C 0.27 13.70 6.26 85.63 0.54 14.24 16 20 C -0.54 -30.01 9.24 25.60 0.24 -29.77 16 21 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 22 C 0.02 0.97 5.46 84.66 0.46 1.43 16 23 N -0.92 -51.33 13.29 21.45 0.28 -51.04 16 24 Si 0.97 42.77 29.54 68.60 2.03 44.80 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 28 N -0.34 -15.07 12.42 -54.44 -0.68 -15.75 16 29 H 0.03 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.08 0.55 8.12 -2.38 -0.02 0.53 16 31 H 0.08 0.44 6.47 -2.39 -0.02 0.42 16 32 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 33 H 0.08 0.65 8.12 -2.39 -0.02 0.63 16 34 H 0.02 0.27 8.14 -2.38 -0.02 0.25 16 35 H 0.03 0.47 8.12 -2.39 -0.02 0.45 16 36 H 0.07 1.16 8.06 -2.39 -0.02 1.14 16 37 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.11 0.83 5.91 -2.39 -0.01 0.81 16 39 H 0.21 2.83 8.06 -2.91 -0.02 2.81 16 40 H 0.16 4.47 5.82 -2.91 -0.02 4.45 16 41 H 0.42 4.55 7.98 -92.71 -0.74 3.81 16 42 H 0.42 8.50 8.84 -92.71 -0.82 7.68 16 43 H 0.17 5.99 5.91 -2.91 -0.02 5.98 16 44 H 0.20 5.90 8.06 -2.91 -0.02 5.87 16 45 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.06 2.91 8.07 -2.38 -0.02 2.89 16 47 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -71.54 395.53 0.19 -71.35 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: -0.54 Total: 24.52 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 10.65 Total: 19.59 kcal Atomic # 7 Polarization: -130.55 SS G_CDS: -11.91 Total: -142.46 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.04 Total: -17.80 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -71.54 0.19 -71.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365060171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.535 kcal (2) G-P(sol) polarization free energy of solvation -71.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds