Wall clock time and date at job start Wed Apr 1 2020 04:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42910 * 113.99567 * 2 1 4 4 C 1.52993 * 109.54353 * 63.10026 * 3 2 1 5 5 H 1.08998 * 109.47165 * 169.51302 * 4 3 2 6 6 C 1.53006 * 109.47202 * 49.51587 * 4 3 2 7 7 N 1.46505 * 109.47287 * 289.51509 * 4 3 2 8 8 C 1.34778 * 120.00005 * 191.29692 * 7 4 3 9 9 O 1.21282 * 119.99777 * 359.72834 * 8 7 4 10 10 C 1.50701 * 119.99931 * 179.72459 * 8 7 4 11 11 H 1.08999 * 109.47188 * 60.00170 * 10 8 7 12 12 C 1.50694 * 109.46873 * 300.00139 * 10 8 7 13 13 H 1.08005 * 120.00492 * 333.95059 * 12 10 8 14 14 C 1.37885 * 119.99916 * 153.95947 * 12 10 8 15 15 N 1.31509 * 119.99733 * 5.11094 * 14 12 10 16 16 Si 1.86801 * 120.00106 * 185.11527 * 14 12 10 17 17 H 1.48497 * 109.46835 * 89.99445 * 16 14 12 18 18 H 1.48492 * 109.47107 * 210.00062 * 16 14 12 19 19 H 1.48501 * 109.46960 * 329.99993 * 16 14 12 20 20 C 1.50701 * 109.46832 * 180.02562 * 10 8 7 21 21 C 1.38226 * 120.00411 * 66.66572 * 20 10 8 22 22 C 1.38234 * 120.00103 * 179.78734 * 21 20 10 23 23 C 1.38234 * 120.00068 * 0.43901 * 22 21 20 24 24 C 1.38235 * 119.99634 * 359.81217 * 23 22 21 25 25 C 1.38233 * 119.99528 * 246.93495 * 20 10 8 26 26 C 1.53173 * 109.54166 * 183.27890 * 3 2 1 27 27 C 1.53109 * 109.15725 * 63.06169 * 26 3 2 28 28 O 1.42897 * 109.48612 * 57.47513 * 27 26 3 29 29 C 1.42904 * 114.09757 * 298.89147 * 28 27 26 30 30 C 1.53089 * 109.41812 * 61.15593 * 29 28 27 31 31 H 1.09001 * 109.47280 * 50.89340 * 1 2 3 32 32 H 1.09000 * 109.46872 * 170.88760 * 1 2 3 33 33 H 1.08998 * 109.47680 * 290.89103 * 1 2 3 34 34 H 1.08998 * 109.46828 * 299.99921 * 6 4 3 35 35 H 1.08997 * 109.46753 * 59.99823 * 6 4 3 36 36 H 1.09004 * 109.47193 * 179.97438 * 6 4 3 37 37 H 0.96994 * 119.99663 * 11.02348 * 7 4 3 38 38 H 0.97003 * 120.00340 * 179.97438 * 15 14 12 39 39 H 1.08003 * 119.99918 * 359.97438 * 21 20 10 40 40 H 1.08003 * 119.99691 * 180.27079 * 22 21 20 41 41 H 1.08002 * 119.99721 * 179.83792 * 23 22 21 42 42 H 1.08001 * 119.99767 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.00657 * 359.97438 * 25 20 10 44 44 H 1.08995 * 109.52351 * 182.88153 * 26 3 2 45 45 H 1.09008 * 109.52371 * 303.06964 * 26 3 2 46 46 H 1.08994 * 109.40536 * 297.49187 * 27 26 3 47 47 H 1.09002 * 109.48738 * 177.51066 * 27 26 3 48 48 H 1.09003 * 109.47455 * 301.16754 * 29 28 27 49 49 H 1.09005 * 109.48842 * 181.14810 * 29 28 27 50 50 H 1.09001 * 109.51861 * 182.48469 * 30 29 28 51 51 H 1.09002 * 109.51945 * 62.29871 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.6224 2.0384 1.2858 5 1 2.2096 2.9524 1.3743 6 6 1.8986 1.1362 2.4902 7 7 0.1972 2.3757 1.2449 8 6 -0.3222 3.2191 2.1588 9 8 0.3892 3.6951 3.0181 10 6 -1.7868 3.5709 2.1129 11 1 -2.3819 2.6643 2.2232 12 6 -2.1055 4.2235 0.7926 13 1 -1.3330 4.7462 0.2480 14 6 -3.3835 4.1535 0.2796 15 7 -4.3470 3.6055 0.9874 16 14 -3.7463 4.8369 -1.4206 17 1 -3.5475 3.7709 -2.4352 18 1 -5.1514 5.3143 -1.4728 19 1 -2.8280 5.9687 -1.7054 20 6 -2.1099 4.5239 3.2348 21 6 -1.5802 5.8007 3.2312 22 6 -1.8801 6.6762 4.2580 23 6 -2.7024 6.2720 5.2931 24 6 -3.2279 4.9935 5.2993 25 6 -2.9314 4.1193 4.2702 26 6 3.5351 1.1876 -0.0826 27 6 3.9168 0.5258 -1.4094 28 8 3.3872 1.2913 -2.4936 29 6 1.9618 1.3941 -2.4938 30 6 1.5018 2.0927 -1.2117 31 1 -0.3634 0.6482 -0.7974 32 1 -0.3633 -1.0147 -0.1628 33 1 -0.3634 0.3664 0.9601 34 1 1.3113 0.2222 2.4017 35 1 2.9588 0.8853 2.5206 36 1 1.6227 1.6585 3.4064 37 1 -0.3716 1.9950 0.5576 38 1 -5.2461 3.5566 0.6268 39 1 -0.9345 6.1152 2.4246 40 1 -1.4698 7.6753 4.2529 41 1 -2.9346 6.9553 6.0966 42 1 -3.8700 4.6775 6.1081 43 1 -3.3422 3.1205 4.2751 44 1 3.9806 2.1810 -0.0310 45 1 3.8990 0.5807 0.7466 46 1 3.5060 -0.4833 -1.4422 47 1 5.0025 0.4792 -1.4935 48 1 1.5255 0.3964 -2.5409 49 1 1.6391 1.9731 -3.3592 50 1 0.4127 2.1327 -1.1894 51 1 1.9050 3.1051 -1.1837 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412195616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:41 Heat of formation + Delta-G solvation = -113.520589 kcal Electronic energy + Delta-G solvation = -32849.739991 eV Core-core repulsion = 28713.677838 eV Total energy + Delta-G solvation = -4136.062153 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.96740 -40.57227 -39.34246 -38.33730 -35.71368 -35.52821 -33.68906 -32.84727 -32.29829 -31.53004 -30.96598 -28.98544 -27.85438 -26.42689 -25.63119 -24.41717 -23.26500 -23.10858 -21.97946 -21.39277 -20.59264 -18.71986 -18.22254 -17.61822 -17.35305 -17.17722 -16.90362 -16.64370 -16.53106 -16.26352 -15.94786 -15.80260 -15.42910 -15.33602 -15.21301 -14.59571 -14.31214 -14.10250 -14.01052 -13.80910 -13.68763 -13.62192 -13.42993 -13.30052 -13.24428 -12.85138 -12.78559 -12.73592 -12.67996 -12.26664 -12.22916 -12.08811 -11.96581 -11.72439 -11.58656 -11.34022 -11.26671 -10.74578 -10.66174 -10.49466 -10.22062 -9.90266 -9.55086 -9.24355 -8.21094 -6.34312 0.76694 0.81712 1.39564 1.43642 1.51339 1.92938 2.39760 2.43596 2.66460 2.96266 3.07790 3.26998 3.46581 3.60482 3.72190 3.99933 4.19977 4.22480 4.25069 4.29307 4.29811 4.31580 4.40393 4.44218 4.45836 4.49911 4.54253 4.61262 4.64995 4.70857 4.78712 4.79518 4.85826 4.87142 4.97308 4.98397 5.03836 5.07956 5.08734 5.19557 5.27840 5.37450 5.43895 5.63937 5.66584 5.78631 5.83187 5.93755 6.11053 6.24271 6.24974 6.40402 6.66932 6.73199 7.33421 7.51319 8.86251 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011369 B = 0.004030 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.351569 B = 6945.601151 C = 8364.241076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.368 6.368 3 C 0.119 3.881 4 C 0.124 3.876 5 H 0.068 0.932 6 C -0.149 4.149 7 N -0.720 5.720 8 C 0.527 3.473 9 O -0.586 6.586 10 C 0.057 3.943 11 H 0.057 0.943 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.037 3.963 15 N -0.899 5.899 16 Si 0.948 3.052 17 H -0.262 1.262 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.029 4.029 21 C -0.111 4.111 22 C -0.137 4.137 23 C -0.145 4.145 24 C -0.131 4.131 25 C -0.139 4.139 26 C -0.136 4.136 27 C 0.064 3.936 28 O -0.398 6.398 29 C 0.070 3.930 30 C -0.186 4.186 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.407 0.593 38 H 0.266 0.734 39 H 0.093 0.907 40 H 0.134 0.866 41 H 0.145 0.855 42 H 0.138 0.862 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.060 0.940 47 H 0.115 0.885 48 H 0.060 0.940 49 H 0.102 0.898 50 H 0.077 0.923 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.306 -6.564 -2.717 12.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.287 6.287 3 C 0.079 3.921 4 C 0.019 3.981 5 H 0.086 0.914 6 C -0.207 4.207 7 N -0.376 5.376 8 C 0.316 3.684 9 O -0.466 6.466 10 C 0.036 3.964 11 H 0.075 0.925 12 C -0.557 4.557 13 H 0.072 0.928 14 C -0.166 4.166 15 N -0.535 5.535 16 Si 0.774 3.226 17 H -0.187 1.187 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.030 4.030 21 C -0.129 4.129 22 C -0.155 4.155 23 C -0.163 4.163 24 C -0.149 4.149 25 C -0.157 4.157 26 C -0.174 4.174 27 C -0.012 4.012 28 O -0.317 6.317 29 C -0.007 4.007 30 C -0.224 4.224 31 H 0.071 0.929 32 H 0.126 0.874 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.248 0.752 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.151 0.849 41 H 0.163 0.837 42 H 0.156 0.844 43 H 0.123 0.877 44 H 0.107 0.893 45 H 0.118 0.882 46 H 0.078 0.922 47 H 0.133 0.867 48 H 0.078 0.922 49 H 0.120 0.880 50 H 0.095 0.905 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.837 -6.384 -2.274 12.782 hybrid contribution -1.420 0.499 -0.811 1.709 sum 9.418 -5.885 -3.085 11.526 Atomic orbital electron populations 1.23249 0.81102 1.04252 1.00759 1.87914 1.19833 1.26266 1.94710 1.21700 0.95414 0.83310 0.91705 1.21542 0.82161 0.98004 0.96376 0.91440 1.22005 1.02888 0.99063 0.96791 1.46557 1.10048 1.48014 1.32987 1.21336 0.91155 0.76344 0.79575 1.90548 1.63197 1.54634 1.38261 1.17964 0.88307 0.95962 0.94210 0.92511 1.20724 0.95798 1.36408 1.02741 0.92821 1.25561 0.95785 0.94807 1.00458 1.70041 1.01585 1.43951 1.37968 0.85699 0.77163 0.79124 0.80643 1.18730 1.21429 1.19905 1.20046 0.94248 0.95301 0.93388 1.20821 0.99768 0.94138 0.98186 1.21307 0.99606 0.99732 0.94858 1.21243 0.99094 0.96594 0.99345 1.21289 1.00643 0.94394 0.98587 1.21093 0.99788 0.99869 0.94952 1.22223 0.90799 1.03730 1.00605 1.22659 1.00115 0.94077 0.84390 1.87891 1.20968 1.74129 1.48699 1.22505 0.81080 1.00261 0.96824 1.22795 1.02391 1.00795 0.96374 0.92945 0.87434 0.93743 0.91986 0.89698 0.94235 0.75237 0.92471 0.88859 0.84856 0.83689 0.84424 0.87727 0.89343 0.88234 0.92197 0.86675 0.92160 0.87984 0.90500 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 8.91 113.37 1.01 1.07 16 2 O -0.37 -8.90 8.34 -148.98 -1.24 -10.14 16 3 C 0.12 2.90 0.37 -10.68 0.00 2.89 16 4 C 0.12 3.76 1.75 44.99 0.08 3.83 16 5 H 0.07 2.25 7.97 -2.39 -0.02 2.23 16 6 C -0.15 -4.32 8.78 71.98 0.63 -3.69 16 7 N -0.72 -25.98 3.44 -442.52 -1.52 -27.50 16 8 C 0.53 23.48 6.81 87.66 0.60 24.08 16 9 O -0.59 -28.61 14.29 -3.03 -0.04 -28.66 16 10 C 0.06 2.74 2.22 -13.03 -0.03 2.72 16 11 H 0.06 2.94 7.42 -2.39 -0.02 2.92 16 12 C -0.52 -25.92 7.44 25.60 0.19 -25.73 16 13 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 14 C 0.04 1.83 5.45 84.66 0.46 2.29 16 15 N -0.90 -47.47 13.00 21.45 0.28 -47.19 16 16 Si 0.95 40.02 29.54 68.60 2.03 42.04 16 17 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 18 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 20 C -0.03 -1.39 4.29 -19.87 -0.09 -1.48 16 21 C -0.11 -5.14 8.34 22.27 0.19 -4.96 16 22 C -0.14 -5.36 10.05 22.27 0.22 -5.13 16 23 C -0.14 -5.14 10.05 22.27 0.22 -4.92 16 24 C -0.13 -4.97 10.05 22.27 0.22 -4.75 16 25 C -0.14 -6.23 9.67 22.27 0.22 -6.02 16 26 C -0.14 -2.67 4.91 30.69 0.15 -2.52 16 27 C 0.06 1.17 6.69 72.02 0.48 1.66 16 28 O -0.40 -9.17 10.77 -148.98 -1.60 -10.78 16 29 C 0.07 1.54 6.69 72.01 0.48 2.02 16 30 C -0.19 -4.68 4.24 30.68 0.13 -4.55 16 31 H 0.05 1.26 5.48 -2.39 -0.01 1.25 16 32 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.04 1.25 5.29 -2.39 -0.01 1.24 16 34 H 0.06 1.76 6.69 -2.39 -0.02 1.74 16 35 H 0.08 1.96 6.86 -2.39 -0.02 1.94 16 36 H 0.04 1.37 7.03 -2.38 -0.02 1.35 16 37 H 0.41 14.06 4.05 -92.71 -0.38 13.68 16 38 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 39 H 0.09 4.49 7.87 -2.91 -0.02 4.47 16 40 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 41 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 42 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 43 H 0.10 4.64 7.96 -2.91 -0.02 4.61 16 44 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.10 1.69 6.93 -2.38 -0.02 1.67 16 46 H 0.06 1.10 7.82 -2.39 -0.02 1.08 16 47 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.06 1.27 7.82 -2.39 -0.02 1.25 16 49 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 50 H 0.08 2.09 5.01 -2.39 -0.01 2.08 16 51 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -62.44 392.61 3.62 -58.81 By element: Atomic # 1 Polarization: 46.01 SS G_CDS: 0.56 Total: 46.57 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 5.17 Total: -23.17 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -1.24 Total: -74.69 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -2.89 Total: -49.57 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.04 kcal Total: -62.44 3.62 -58.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412195616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.707 kcal (2) G-P(sol) polarization free energy of solvation -62.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds