Wall clock time and date at job start Wed Apr 1 2020 04:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42904 * 114.00365 * 2 1 4 4 C 1.53002 * 109.54170 * 65.23848 * 3 2 1 5 5 H 1.08992 * 109.47071 * 170.45403 * 4 3 2 6 6 C 1.53006 * 109.46882 * 50.45650 * 4 3 2 7 7 N 1.46503 * 109.47001 * 290.45680 * 4 3 2 8 8 C 1.34777 * 119.99487 * 190.74805 * 7 4 3 9 9 O 1.21286 * 120.00041 * 0.02562 * 8 7 4 10 10 C 1.50703 * 119.99815 * 179.97438 * 8 7 4 11 11 H 1.09001 * 109.46894 * 300.00497 * 10 8 7 12 12 C 1.50705 * 109.46632 * 60.00035 * 10 8 7 13 13 H 1.07992 * 119.99733 * 234.57253 * 12 10 8 14 14 C 1.37877 * 119.99882 * 54.30461 * 12 10 8 15 15 N 1.31516 * 120.00122 * 358.34199 * 14 12 10 16 16 Si 1.86800 * 119.99763 * 178.34361 * 14 12 10 17 17 H 1.48501 * 109.47232 * 59.99866 * 16 14 12 18 18 H 1.48507 * 109.46955 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47072 * 299.99661 * 16 14 12 20 20 C 1.50691 * 109.47100 * 180.02562 * 10 8 7 21 21 C 1.38237 * 120.00261 * 239.23765 * 20 10 8 22 22 C 1.38230 * 120.00425 * 179.80814 * 21 20 10 23 23 C 1.38241 * 119.99691 * 0.40607 * 22 21 20 24 24 C 1.38232 * 120.00211 * 359.84533 * 23 22 21 25 25 C 1.38238 * 120.00087 * 59.51237 * 20 10 8 26 26 C 1.53177 * 109.54153 * 185.41614 * 3 2 1 27 27 C 1.53104 * 109.16055 * 63.06868 * 26 3 2 28 28 O 1.42903 * 109.48725 * 57.46748 * 27 26 3 29 29 C 1.42906 * 114.09945 * 298.89261 * 28 27 26 30 30 C 1.53091 * 109.41636 * 61.15696 * 29 28 27 31 31 H 1.09001 * 109.46828 * 291.23268 * 1 2 3 32 32 H 1.09003 * 109.47067 * 51.22424 * 1 2 3 33 33 H 1.09000 * 109.47792 * 171.23025 * 1 2 3 34 34 H 1.09001 * 109.46921 * 180.02562 * 6 4 3 35 35 H 1.09003 * 109.46587 * 299.99718 * 6 4 3 36 36 H 1.08993 * 109.47323 * 59.99543 * 6 4 3 37 37 H 0.96995 * 119.99748 * 10.74714 * 7 4 3 38 38 H 0.96992 * 119.99941 * 180.02562 * 15 14 12 39 39 H 1.08004 * 119.99376 * 0.02562 * 21 20 10 40 40 H 1.08006 * 120.00364 * 180.22981 * 22 21 20 41 41 H 1.08003 * 119.99550 * 179.83252 * 23 22 21 42 42 H 1.07995 * 120.00390 * 179.97438 * 24 23 22 43 43 H 1.07998 * 119.99923 * 359.97438 * 25 20 10 44 44 H 1.09001 * 109.51921 * 182.88018 * 26 3 2 45 45 H 1.09000 * 109.52644 * 303.06562 * 26 3 2 46 46 H 1.09004 * 109.40504 * 297.49167 * 27 26 3 47 47 H 1.09000 * 109.49449 * 177.50745 * 27 26 3 48 48 H 1.08997 * 109.47928 * 301.17836 * 29 28 27 49 49 H 1.08999 * 109.48772 * 181.14825 * 29 28 27 50 50 H 1.08992 * 109.52531 * 182.48650 * 30 29 28 51 51 H 1.09003 * 109.52046 * 62.29355 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6667 2.0187 1.3093 5 1 2.2447 2.9397 1.3838 6 6 2.0054 1.1071 2.4906 7 7 0.2367 2.3362 1.3318 8 6 -0.2571 3.1535 2.2830 9 8 0.4824 3.6263 3.1200 10 6 -1.7280 3.4807 2.3058 11 1 -2.0067 3.9663 1.3706 12 6 -2.5226 2.2105 2.4685 13 1 -3.2968 1.9630 1.7574 14 6 -2.2574 1.3617 3.5222 15 7 -1.2895 1.6440 4.3666 16 14 -3.2731 -0.1894 3.7504 17 1 -3.1343 -1.0530 2.5503 18 1 -2.7914 -0.9249 4.9472 19 1 -4.7004 0.1762 3.9348 20 6 -2.0187 4.4068 3.4584 21 6 -2.9152 4.0283 4.4402 22 6 -3.1790 4.8762 5.4996 23 6 -2.5525 6.1063 5.5728 24 6 -1.6599 6.4871 4.5883 25 6 -1.3932 5.6375 3.5310 26 6 3.5315 1.1889 -0.1363 27 6 3.8675 0.5475 -1.4853 28 8 3.3015 1.3294 -2.5390 29 6 1.8770 1.4319 -2.4891 30 6 1.4611 2.1108 -1.1816 31 1 -0.3633 0.3722 0.9579 32 1 -0.3633 0.6436 -0.8012 33 1 -0.3635 -1.0156 -0.1567 34 1 1.7602 1.6150 3.4234 35 1 1.4273 0.1860 2.4161 36 1 3.0693 0.8707 2.4738 37 1 -0.3545 1.9584 0.6621 38 1 -1.1027 1.0467 5.1076 39 1 -3.4070 3.0685 4.3813 40 1 -3.8766 4.5789 6.2686 41 1 -2.7606 6.7699 6.3991 42 1 -1.1708 7.4482 4.6453 43 1 -0.6958 5.9349 2.7618 44 1 3.9788 2.1815 -0.0849 45 1 3.9232 0.5697 0.6707 46 1 3.4554 -0.4610 -1.5194 47 1 4.9497 0.5024 -1.6070 48 1 1.4390 0.4349 -2.5363 49 1 1.5252 2.0239 -3.3341 50 1 0.3735 2.1502 -1.1214 51 1 1.8654 3.1227 -1.1519 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412195619.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:46 Heat of formation + Delta-G solvation = -86.676700 kcal Electronic energy + Delta-G solvation = -33420.556115 eV Core-core repulsion = 29285.658001 eV Total energy + Delta-G solvation = -4134.898115 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.63462 -38.85180 -37.75263 -36.91122 -34.15325 -33.65116 -32.30791 -31.28296 -30.90413 -29.68039 -29.42844 -27.20854 -26.58863 -25.04527 -23.92166 -23.40888 -21.68126 -21.25173 -20.28842 -19.99739 -19.04217 -17.16881 -16.49638 -16.18205 -16.03154 -15.59240 -15.45963 -15.37503 -15.04096 -14.73905 -14.51877 -14.20352 -13.91113 -13.73205 -13.40256 -13.03778 -12.78242 -12.57938 -12.51383 -12.44130 -12.33384 -12.30810 -12.06852 -11.72655 -11.42662 -11.36052 -11.24888 -11.11692 -10.97438 -10.85698 -10.75693 -10.42640 -10.40412 -10.28145 -10.08871 -9.73359 -9.67609 -9.41133 -9.12453 -8.68289 -8.27234 -7.96041 -7.76041 -7.42008 -6.19734 -4.35820 2.49366 2.58394 3.14514 3.23328 3.24927 3.80417 3.88245 4.08495 4.18457 4.37503 4.69930 4.77834 4.79741 4.96473 5.02114 5.05882 5.21919 5.37667 5.39601 5.53820 5.58763 5.61491 5.74640 5.75570 5.79833 5.82135 5.92022 5.93496 6.01757 6.02781 6.07454 6.10521 6.18367 6.25573 6.36189 6.51560 6.61228 6.66921 6.79929 6.86666 7.03194 7.08004 7.14835 7.19710 7.36019 7.49357 7.54346 7.60333 7.65401 7.77027 8.12726 8.24342 8.56432 8.76989 9.29809 9.72564 10.80223 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013496 B = 0.004056 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.203043 B = 6901.483868 C = 8042.910159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.372 6.372 3 C 0.112 3.888 4 C 0.136 3.864 5 H 0.072 0.928 6 C -0.151 4.151 7 N -0.739 5.739 8 C 0.554 3.446 9 O -0.544 6.544 10 C 0.055 3.945 11 H 0.053 0.947 12 C -0.543 4.543 13 H 0.065 0.935 14 C 0.075 3.925 15 N -0.837 5.837 16 Si 0.882 3.118 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.015 4.015 21 C -0.059 4.059 22 C -0.148 4.148 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.109 4.109 26 C -0.138 4.138 27 C 0.065 3.935 28 O -0.386 6.386 29 C 0.066 3.934 30 C -0.183 4.183 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.394 0.606 38 H 0.266 0.734 39 H 0.134 0.866 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.091 0.909 48 H 0.054 0.946 49 H 0.091 0.909 50 H 0.083 0.917 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.573 -0.844 -9.382 10.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.291 6.291 3 C 0.072 3.928 4 C 0.030 3.970 5 H 0.090 0.910 6 C -0.209 4.209 7 N -0.396 5.396 8 C 0.344 3.656 9 O -0.420 6.420 10 C 0.034 3.966 11 H 0.071 0.929 12 C -0.581 4.581 13 H 0.084 0.916 14 C -0.133 4.133 15 N -0.470 5.470 16 Si 0.709 3.291 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.016 4.016 21 C -0.077 4.077 22 C -0.167 4.167 23 C -0.162 4.162 24 C -0.161 4.161 25 C -0.128 4.128 26 C -0.176 4.176 27 C -0.012 4.012 28 O -0.304 6.304 29 C -0.010 4.010 30 C -0.221 4.221 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.232 0.768 38 H 0.077 0.923 39 H 0.151 0.849 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.076 0.924 47 H 0.109 0.891 48 H 0.073 0.927 49 H 0.109 0.891 50 H 0.101 0.899 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.440 -0.637 -8.713 10.291 hybrid contribution -1.122 -1.105 0.455 1.640 sum 4.317 -1.742 -8.258 9.480 Atomic orbital electron populations 1.23299 0.81062 1.02593 1.02593 1.87888 1.19924 1.26396 1.94924 1.21720 0.93722 0.83802 0.93530 1.21189 0.84332 0.97603 0.93873 0.90970 1.22011 0.99414 0.99955 0.99548 1.46470 1.07228 1.52038 1.33909 1.20904 0.90463 0.75737 0.78531 1.90529 1.60802 1.53513 1.37151 1.17902 0.90274 0.95202 0.93217 0.92947 1.20671 1.20456 1.04367 1.12572 0.91633 1.25022 0.94993 0.97560 0.95731 1.70051 1.27036 1.36127 1.13764 0.86812 0.80913 0.83476 0.77929 1.20022 1.21183 1.19910 1.19807 0.93324 0.92036 0.96418 1.21321 0.96260 0.98379 0.91742 1.21046 1.01424 0.95071 0.99118 1.20784 0.99488 0.97075 0.98849 1.20782 1.00042 0.99291 0.96033 1.20872 0.98912 0.94799 0.98195 1.22166 0.93185 1.03035 0.99180 1.22519 0.98376 0.94342 0.85941 1.87886 1.20443 1.72844 1.49273 1.22494 0.81417 1.00123 0.97012 1.22795 1.02638 1.00984 0.95715 0.90124 0.93738 0.90070 0.90474 0.92441 0.93691 0.76776 0.92331 0.84884 0.88044 0.88169 0.88071 0.88099 0.89719 0.89590 0.92360 0.89060 0.92733 0.89078 0.89890 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.00 101.05 0.91 0.92 16 2 O -0.37 -5.46 8.31 -35.23 -0.29 -5.76 16 3 C 0.11 1.55 0.37 -90.44 -0.03 1.52 16 4 C 0.14 2.30 1.77 -67.92 -0.12 2.18 16 5 H 0.07 1.29 7.99 -51.93 -0.42 0.88 16 6 C -0.15 -2.79 8.85 37.16 0.33 -2.46 16 7 N -0.74 -13.84 3.51 -53.80 -0.19 -14.03 16 8 C 0.55 12.48 5.18 -10.98 -0.06 12.43 16 9 O -0.54 -13.98 13.70 5.55 0.08 -13.90 16 10 C 0.06 1.25 2.70 -94.08 -0.25 1.00 16 11 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 12 C -0.54 -12.58 7.44 -34.44 -0.26 -12.84 16 13 H 0.07 1.48 7.81 -52.49 -0.41 1.07 16 14 C 0.08 1.79 3.43 -17.82 -0.06 1.73 16 15 N -0.84 -21.56 10.55 55.43 0.58 -20.97 16 16 Si 0.88 18.99 29.54 -169.99 -5.02 13.97 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 C -0.01 -0.35 4.53 -104.63 -0.47 -0.82 16 21 C -0.06 -1.37 8.00 -39.58 -0.32 -1.69 16 22 C -0.15 -3.09 10.05 -39.58 -0.40 -3.49 16 23 C -0.14 -2.81 10.05 -39.58 -0.40 -3.21 16 24 C -0.14 -2.86 10.05 -39.58 -0.40 -3.26 16 25 C -0.11 -2.40 8.42 -39.58 -0.33 -2.73 16 26 C -0.14 -1.66 4.90 -26.59 -0.13 -1.79 16 27 C 0.06 0.72 6.69 37.21 0.25 0.97 16 28 O -0.39 -4.85 10.77 -35.23 -0.38 -5.23 16 29 C 0.07 0.75 6.70 37.20 0.25 1.00 16 30 C -0.18 -2.28 4.18 -26.59 -0.11 -2.39 16 31 H 0.08 1.41 5.44 -51.93 -0.28 1.13 16 32 H 0.04 0.56 5.57 -51.93 -0.29 0.27 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.73 6.99 -51.93 -0.36 1.37 16 35 H 0.06 1.11 7.01 -51.93 -0.36 0.75 16 36 H 0.04 0.71 6.82 -51.93 -0.35 0.36 16 37 H 0.39 6.82 4.02 -40.82 -0.16 6.66 16 38 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 39 H 0.13 3.23 5.31 -52.48 -0.28 2.96 16 40 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 41 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 43 H 0.10 2.12 7.96 -52.49 -0.42 1.71 16 44 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.09 1.01 6.89 -51.93 -0.36 0.65 16 46 H 0.06 0.67 7.82 -51.93 -0.41 0.26 16 47 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.05 0.62 7.82 -51.93 -0.41 0.21 16 49 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.08 1.02 5.01 -51.93 -0.26 0.76 16 51 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -28.25 383.81 -8.75 -37.00 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -7.71 Total: 16.06 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -1.60 Total: -12.93 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.40 Total: -35.00 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.60 Total: -24.89 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.25 -8.75 -37.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412195619.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.677 kcal (2) G-P(sol) polarization free energy of solvation -28.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds