Wall clock time and date at job start Wed Apr 1 2020 04:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42904 * 114.00365 * 2 1 4 4 C 1.53002 * 109.54170 * 65.23848 * 3 2 1 5 5 H 1.08992 * 109.47071 * 170.45403 * 4 3 2 6 6 C 1.53006 * 109.46882 * 50.45650 * 4 3 2 7 7 N 1.46503 * 109.47001 * 290.45680 * 4 3 2 8 8 C 1.34777 * 119.99487 * 190.74805 * 7 4 3 9 9 O 1.21286 * 120.00041 * 0.02562 * 8 7 4 10 10 C 1.50703 * 119.99815 * 179.97438 * 8 7 4 11 11 H 1.09001 * 109.46894 * 300.00497 * 10 8 7 12 12 C 1.50705 * 109.46632 * 60.00035 * 10 8 7 13 13 H 1.07992 * 119.99733 * 234.57253 * 12 10 8 14 14 C 1.37877 * 119.99882 * 54.30461 * 12 10 8 15 15 N 1.31516 * 120.00122 * 358.34199 * 14 12 10 16 16 Si 1.86800 * 119.99763 * 178.34361 * 14 12 10 17 17 H 1.48501 * 109.47232 * 59.99866 * 16 14 12 18 18 H 1.48507 * 109.46955 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47072 * 299.99661 * 16 14 12 20 20 C 1.50691 * 109.47100 * 180.02562 * 10 8 7 21 21 C 1.38237 * 120.00261 * 239.23765 * 20 10 8 22 22 C 1.38230 * 120.00425 * 179.80814 * 21 20 10 23 23 C 1.38241 * 119.99691 * 0.40607 * 22 21 20 24 24 C 1.38232 * 120.00211 * 359.84533 * 23 22 21 25 25 C 1.38238 * 120.00087 * 59.51237 * 20 10 8 26 26 C 1.53177 * 109.54153 * 185.41614 * 3 2 1 27 27 C 1.53104 * 109.16055 * 63.06868 * 26 3 2 28 28 O 1.42903 * 109.48725 * 57.46748 * 27 26 3 29 29 C 1.42906 * 114.09945 * 298.89261 * 28 27 26 30 30 C 1.53091 * 109.41636 * 61.15696 * 29 28 27 31 31 H 1.09001 * 109.46828 * 291.23268 * 1 2 3 32 32 H 1.09003 * 109.47067 * 51.22424 * 1 2 3 33 33 H 1.09000 * 109.47792 * 171.23025 * 1 2 3 34 34 H 1.09001 * 109.46921 * 180.02562 * 6 4 3 35 35 H 1.09003 * 109.46587 * 299.99718 * 6 4 3 36 36 H 1.08993 * 109.47323 * 59.99543 * 6 4 3 37 37 H 0.96995 * 119.99748 * 10.74714 * 7 4 3 38 38 H 0.96992 * 119.99941 * 180.02562 * 15 14 12 39 39 H 1.08004 * 119.99376 * 0.02562 * 21 20 10 40 40 H 1.08006 * 120.00364 * 180.22981 * 22 21 20 41 41 H 1.08003 * 119.99550 * 179.83252 * 23 22 21 42 42 H 1.07995 * 120.00390 * 179.97438 * 24 23 22 43 43 H 1.07998 * 119.99923 * 359.97438 * 25 20 10 44 44 H 1.09001 * 109.51921 * 182.88018 * 26 3 2 45 45 H 1.09000 * 109.52644 * 303.06562 * 26 3 2 46 46 H 1.09004 * 109.40504 * 297.49167 * 27 26 3 47 47 H 1.09000 * 109.49449 * 177.50745 * 27 26 3 48 48 H 1.08997 * 109.47928 * 301.17836 * 29 28 27 49 49 H 1.08999 * 109.48772 * 181.14825 * 29 28 27 50 50 H 1.08992 * 109.52531 * 182.48650 * 30 29 28 51 51 H 1.09003 * 109.52046 * 62.29355 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6667 2.0187 1.3093 5 1 2.2447 2.9397 1.3838 6 6 2.0054 1.1071 2.4906 7 7 0.2367 2.3362 1.3318 8 6 -0.2571 3.1535 2.2830 9 8 0.4824 3.6263 3.1200 10 6 -1.7280 3.4807 2.3058 11 1 -2.0067 3.9663 1.3706 12 6 -2.5226 2.2105 2.4685 13 1 -3.2968 1.9630 1.7574 14 6 -2.2574 1.3617 3.5222 15 7 -1.2895 1.6440 4.3666 16 14 -3.2731 -0.1894 3.7504 17 1 -3.1343 -1.0530 2.5503 18 1 -2.7914 -0.9249 4.9472 19 1 -4.7004 0.1762 3.9348 20 6 -2.0187 4.4068 3.4584 21 6 -2.9152 4.0283 4.4402 22 6 -3.1790 4.8762 5.4996 23 6 -2.5525 6.1063 5.5728 24 6 -1.6599 6.4871 4.5883 25 6 -1.3932 5.6375 3.5310 26 6 3.5315 1.1889 -0.1363 27 6 3.8675 0.5475 -1.4853 28 8 3.3015 1.3294 -2.5390 29 6 1.8770 1.4319 -2.4891 30 6 1.4611 2.1108 -1.1816 31 1 -0.3633 0.3722 0.9579 32 1 -0.3633 0.6436 -0.8012 33 1 -0.3635 -1.0156 -0.1567 34 1 1.7602 1.6150 3.4234 35 1 1.4273 0.1860 2.4161 36 1 3.0693 0.8707 2.4738 37 1 -0.3545 1.9584 0.6621 38 1 -1.1027 1.0467 5.1076 39 1 -3.4070 3.0685 4.3813 40 1 -3.8766 4.5789 6.2686 41 1 -2.7606 6.7699 6.3991 42 1 -1.1708 7.4482 4.6453 43 1 -0.6958 5.9349 2.7618 44 1 3.9788 2.1815 -0.0849 45 1 3.9232 0.5697 0.6707 46 1 3.4554 -0.4610 -1.5194 47 1 4.9497 0.5024 -1.6070 48 1 1.4390 0.4349 -2.5363 49 1 1.5252 2.0239 -3.3341 50 1 0.3735 2.1502 -1.1214 51 1 1.8654 3.1227 -1.1519 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412195619.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:45 Heat of formation + Delta-G solvation = -102.413640 kcal Electronic energy + Delta-G solvation = -33421.238520 eV Core-core repulsion = 29285.658001 eV Total energy + Delta-G solvation = -4135.580520 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.84261 -40.44675 -39.16603 -38.20939 -35.64077 -35.40426 -33.55151 -32.66274 -32.26130 -31.33578 -30.84233 -28.87925 -27.79465 -26.33573 -25.60420 -24.38486 -23.08872 -22.87150 -21.82647 -21.27041 -20.57154 -18.77131 -17.92210 -17.47084 -17.11571 -16.95782 -16.90105 -16.63375 -16.54969 -16.14504 -15.87768 -15.51783 -15.41921 -15.28094 -15.04307 -14.32275 -14.18350 -14.08201 -14.01482 -13.87062 -13.67738 -13.61002 -13.31693 -13.23184 -13.02410 -12.73961 -12.66553 -12.61494 -12.53974 -12.23063 -12.19120 -12.01531 -11.79074 -11.59183 -11.40656 -11.30068 -11.15724 -10.69381 -10.55307 -10.30976 -10.02444 -9.57602 -9.41974 -9.09502 -8.06331 -6.25235 0.84401 0.93100 1.40658 1.45452 1.49519 2.34951 2.46937 2.70828 2.77982 2.98805 3.20969 3.33723 3.56529 3.66956 3.76184 4.02907 4.27285 4.29883 4.32338 4.33331 4.34432 4.40332 4.47708 4.48807 4.54524 4.60256 4.65958 4.67980 4.73987 4.79235 4.82154 4.87008 4.94221 4.99033 5.01708 5.05090 5.08822 5.13724 5.16368 5.25128 5.42577 5.43372 5.55496 5.70389 5.86680 5.93743 5.97787 6.02154 6.19448 6.26332 6.42218 6.52131 6.76843 7.09292 7.42498 8.00418 8.91624 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013496 B = 0.004056 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.203043 B = 6901.483868 C = 8042.910159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.375 6.375 3 C 0.117 3.883 4 C 0.136 3.864 5 H 0.063 0.937 6 C -0.138 4.138 7 N -0.726 5.726 8 C 0.555 3.445 9 O -0.581 6.581 10 C 0.046 3.954 11 H 0.063 0.937 12 C -0.537 4.537 13 H 0.070 0.930 14 C 0.048 3.952 15 N -0.864 5.864 16 Si 0.928 3.072 17 H -0.264 1.264 18 H -0.299 1.299 19 H -0.271 1.271 20 C -0.036 4.036 21 C -0.084 4.084 22 C -0.155 4.155 23 C -0.141 4.141 24 C -0.144 4.144 25 C -0.126 4.126 26 C -0.137 4.137 27 C 0.067 3.933 28 O -0.396 6.396 29 C 0.068 3.932 30 C -0.181 4.181 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.032 0.968 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.401 0.599 38 H 0.255 0.745 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.138 0.862 42 H 0.132 0.868 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.056 0.944 47 H 0.114 0.886 48 H 0.057 0.943 49 H 0.110 0.890 50 H 0.082 0.918 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.733 -0.665 -10.682 11.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.294 6.294 3 C 0.077 3.923 4 C 0.031 3.969 5 H 0.081 0.919 6 C -0.196 4.196 7 N -0.383 5.383 8 C 0.344 3.656 9 O -0.460 6.460 10 C 0.025 3.975 11 H 0.081 0.919 12 C -0.575 4.575 13 H 0.088 0.912 14 C -0.158 4.158 15 N -0.498 5.498 16 Si 0.755 3.245 17 H -0.188 1.188 18 H -0.226 1.226 19 H -0.196 1.196 20 C -0.037 4.037 21 C -0.102 4.102 22 C -0.173 4.173 23 C -0.159 4.159 24 C -0.162 4.162 25 C -0.144 4.144 26 C -0.175 4.175 27 C -0.009 4.009 28 O -0.315 6.315 29 C -0.008 4.008 30 C -0.218 4.218 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.241 0.759 38 H 0.064 0.936 39 H 0.132 0.868 40 H 0.140 0.860 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.119 0.881 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.074 0.926 47 H 0.132 0.868 48 H 0.075 0.925 49 H 0.128 0.872 50 H 0.101 0.899 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.581 -0.478 -10.065 11.519 hybrid contribution -1.181 -1.114 0.874 1.844 sum 4.400 -1.592 -9.191 10.314 Atomic orbital electron populations 1.23270 0.81009 1.03822 1.01380 1.87896 1.20035 1.26735 1.94781 1.21723 0.95133 0.83361 0.92042 1.21294 0.82990 0.97250 0.95374 0.91895 1.21847 1.00799 0.98940 0.98057 1.46353 1.08275 1.50720 1.32972 1.20885 0.90260 0.75871 0.78568 1.90496 1.61560 1.55175 1.38786 1.18018 0.90458 0.95226 0.93828 0.91926 1.20831 1.20093 1.04356 1.12198 0.91157 1.25446 0.95405 0.99430 0.95474 1.70214 1.28744 1.36636 1.14168 0.86065 0.79767 0.81134 0.77551 1.18825 1.22585 1.19620 1.19940 0.94050 0.92838 0.96910 1.21283 0.97288 0.98403 0.93212 1.21345 1.01796 0.95403 0.98797 1.21185 0.98323 0.96879 0.99511 1.21178 0.99706 1.00136 0.95141 1.21005 0.99198 0.94936 0.99263 1.22213 0.91525 1.03655 1.00142 1.22602 0.99697 0.93791 0.84857 1.87883 1.20937 1.73056 1.49659 1.22563 0.81065 1.00416 0.96766 1.22772 1.02510 1.00770 0.95786 0.93486 0.91786 0.88609 0.94918 0.93720 0.91123 0.75876 0.93587 0.86764 0.85973 0.84463 0.84979 0.88138 0.89158 0.89330 0.92566 0.86803 0.92511 0.87169 0.89947 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.00 113.37 1.02 1.06 16 2 O -0.38 -10.53 8.31 -148.98 -1.24 -11.77 16 3 C 0.12 3.11 0.37 -10.67 0.00 3.10 16 4 C 0.14 4.67 1.77 44.99 0.08 4.74 16 5 H 0.06 2.29 7.99 -2.39 -0.02 2.27 16 6 C -0.14 -5.24 8.85 71.98 0.64 -4.60 16 7 N -0.73 -27.68 3.51 -442.52 -1.55 -29.24 16 8 C 0.55 25.69 5.18 87.66 0.45 26.15 16 9 O -0.58 -30.98 13.70 -3.05 -0.04 -31.02 16 10 C 0.05 2.13 2.70 -13.03 -0.04 2.09 16 11 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 12 C -0.54 -25.25 7.44 25.60 0.19 -25.06 16 13 H 0.07 3.17 7.81 -2.91 -0.02 3.15 16 14 C 0.05 2.31 3.43 84.65 0.29 2.60 16 15 N -0.86 -46.12 10.55 21.45 0.23 -45.89 16 16 Si 0.93 39.46 29.54 68.60 2.03 41.49 16 17 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 18 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 20 C -0.04 -1.73 4.53 -19.87 -0.09 -1.82 16 21 C -0.08 -3.95 8.00 22.27 0.18 -3.77 16 22 C -0.16 -6.36 10.05 22.27 0.22 -6.14 16 23 C -0.14 -5.21 10.05 22.27 0.22 -4.99 16 24 C -0.14 -5.52 10.05 22.27 0.22 -5.29 16 25 C -0.13 -5.52 8.42 22.27 0.19 -5.34 16 26 C -0.14 -3.06 4.90 30.69 0.15 -2.91 16 27 C 0.07 1.33 6.69 72.02 0.48 1.81 16 28 O -0.40 -8.94 10.77 -148.98 -1.60 -10.54 16 29 C 0.07 1.38 6.70 72.01 0.48 1.87 16 30 C -0.18 -4.19 4.18 30.68 0.13 -4.07 16 31 H 0.05 1.64 5.44 -2.39 -0.01 1.63 16 32 H 0.06 1.49 5.57 -2.39 -0.01 1.48 16 33 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.03 1.52 6.99 -2.39 -0.02 1.50 16 35 H 0.04 1.77 7.01 -2.39 -0.02 1.76 16 36 H 0.07 2.24 6.82 -2.39 -0.02 2.22 16 37 H 0.40 13.94 4.02 -92.71 -0.37 13.57 16 38 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 39 H 0.11 5.72 5.31 -2.91 -0.02 5.70 16 40 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 41 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 42 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 43 H 0.10 4.30 7.96 -2.91 -0.02 4.27 16 44 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.09 1.92 6.89 -2.39 -0.02 1.90 16 46 H 0.06 1.15 7.82 -2.39 -0.02 1.13 16 47 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.06 1.14 7.82 -2.39 -0.02 1.12 16 49 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.08 1.90 5.01 -2.39 -0.01 1.89 16 51 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -62.50 383.81 3.21 -59.29 By element: Atomic # 1 Polarization: 47.67 SS G_CDS: 0.57 Total: 48.24 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 4.82 Total: -20.57 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -1.33 Total: -75.13 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -2.88 Total: -53.33 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -62.50 3.21 -59.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412195619.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.122 kcal (2) G-P(sol) polarization free energy of solvation -62.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds