Wall clock time and date at job start Wed Apr 1 2020 04:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46874 * 2 1 4 4 O 1.42900 * 109.47035 * 119.99464 * 2 1 3 5 5 C 1.42901 * 113.99792 * 130.53827 * 4 2 1 6 6 C 1.52995 * 110.56566 * 172.27115 * 5 4 2 7 7 N 1.46492 * 109.47446 * 301.39008 * 6 5 4 8 8 C 1.34779 * 120.00407 * 184.83777 * 7 6 5 9 9 O 1.21277 * 119.99378 * 5.05471 * 8 7 6 10 10 C 1.50693 * 120.00175 * 185.05521 * 8 7 6 11 11 H 1.09000 * 109.47418 * 309.37307 * 10 8 7 12 12 C 1.50699 * 109.47376 * 69.37418 * 10 8 7 13 13 H 1.08001 * 119.99835 * 35.06686 * 12 10 8 14 14 C 1.37873 * 120.00138 * 215.05810 * 12 10 8 15 15 N 1.31517 * 120.00041 * 5.41723 * 14 12 10 16 16 Si 1.86803 * 120.00000 * 185.41952 * 14 12 10 17 17 H 1.48499 * 109.47051 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47166 * 120.00471 * 16 14 12 19 19 H 1.48505 * 109.46901 * 239.99927 * 16 14 12 20 20 C 1.50703 * 109.47086 * 189.38120 * 10 8 7 21 21 C 1.38244 * 119.99580 * 292.35340 * 20 10 8 22 22 C 1.38232 * 119.99838 * 179.81332 * 21 20 10 23 23 C 1.38231 * 120.00077 * 0.41786 * 22 21 20 24 24 C 1.38241 * 119.99905 * 359.81590 * 23 22 21 25 25 C 1.38229 * 120.00340 * 112.63338 * 20 10 8 26 26 C 1.54511 * 110.51154 * 294.95472 * 5 4 2 27 27 C 1.54483 * 104.06212 * 118.64562 * 26 5 4 28 28 O 1.44417 * 104.90091 * 335.96158 * 27 26 5 29 29 C 1.44685 * 105.13789 * 40.49983 * 28 27 26 30 30 H 1.08993 * 109.47392 * 300.00146 * 1 2 3 31 31 H 1.09002 * 109.47062 * 60.00065 * 1 2 3 32 32 H 1.09008 * 109.46666 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47537 * 240.00365 * 2 1 3 34 34 H 1.08996 * 109.47280 * 59.17527 * 3 2 1 35 35 H 1.09003 * 109.47112 * 179.17696 * 3 2 1 36 36 H 1.08998 * 109.47067 * 299.17613 * 3 2 1 37 37 H 1.09002 * 109.47327 * 61.39792 * 6 5 4 38 38 H 1.09006 * 109.47028 * 181.38825 * 6 5 4 39 39 H 0.97000 * 119.99847 * 4.84411 * 7 6 5 40 40 H 0.97006 * 120.00007 * 179.97438 * 15 14 12 41 41 H 1.08000 * 119.99579 * 359.97438 * 21 20 10 42 42 H 1.08002 * 119.99889 * 180.21129 * 22 21 20 43 43 H 1.07999 * 119.99930 * 179.79362 * 23 22 21 44 44 H 1.08001 * 119.99453 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.00205 * 359.97438 * 25 20 10 46 46 H 1.08992 * 110.51053 * 359.97438 * 26 5 4 47 47 H 1.08999 * 110.62484 * 237.34441 * 26 5 4 48 48 H 1.08993 * 110.37598 * 94.85617 * 27 26 5 49 49 H 1.09003 * 110.36665 * 217.07856 * 27 26 5 50 50 H 1.09003 * 110.35482 * 200.66917 * 29 28 27 51 51 H 1.09002 * 110.35857 * 78.35776 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 3.0000 -1.6653 0.9005 6 6 3.5902 -2.1993 2.2071 7 7 4.1768 -1.0922 2.9664 8 6 4.8442 -1.3390 4.1110 9 8 5.0385 -2.4826 4.4650 10 6 5.3488 -0.1941 4.9509 11 1 5.9093 0.4980 4.3225 12 6 4.1802 0.5259 5.5729 13 1 3.3066 -0.0288 5.8820 14 6 4.2263 1.8928 5.7476 15 7 5.2423 2.5820 5.2760 16 14 2.8459 2.7657 6.6541 17 1 1.8289 1.7719 7.0824 18 1 3.3965 3.4557 7.8482 19 1 2.2151 3.7633 5.7529 20 6 6.2473 -0.7261 6.0375 21 6 5.7192 -1.5005 7.0536 22 6 6.5440 -1.9917 8.0482 23 6 7.8953 -1.7014 8.0316 24 6 8.4226 -0.9230 7.0181 25 6 7.5985 -0.4349 6.0214 26 6 2.4026 -2.8195 0.0647 27 6 3.2264 -2.8021 -1.2420 28 8 3.7288 -1.4521 -1.3464 29 6 4.1139 -1.0872 -0.0003 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.6646 1.9606 0.8824 35 1 3.1299 1.4426 0.0148 36 1 1.6887 1.9521 -0.8973 37 1 2.8023 -2.6674 2.7972 38 1 4.3623 -2.9354 1.9830 39 1 4.0848 -0.1815 2.6453 40 1 5.2746 3.5438 5.3985 41 1 4.6626 -1.7239 7.0688 42 1 6.1319 -2.5996 8.8402 43 1 8.5391 -2.0824 8.8105 44 1 9.4784 -0.6958 7.0054 45 1 8.0104 0.1735 5.2298 46 1 1.3493 -2.6337 -0.1449 47 1 2.5259 -3.7713 0.5812 48 1 4.0523 -3.5106 -1.1795 49 1 2.5897 -3.0370 -2.0950 50 1 4.1588 -0.0028 0.1004 51 1 5.0760 -1.5327 0.2528 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433562961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:40 Heat of formation + Delta-G solvation = -128.323144 kcal Electronic energy + Delta-G solvation = -32063.750709 eV Core-core repulsion = 27927.046669 eV Total energy + Delta-G solvation = -4136.704040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.72367 -40.68535 -39.28495 -38.06216 -35.93660 -35.50062 -33.68898 -32.87757 -32.08528 -31.53458 -30.30748 -29.09356 -28.06561 -26.90995 -25.51123 -23.82937 -23.20196 -22.62713 -22.31116 -21.27240 -20.82482 -18.76446 -18.50730 -17.92585 -17.55165 -17.13831 -16.75513 -16.49448 -16.23523 -15.96890 -15.77595 -15.64875 -15.49898 -15.33473 -15.03763 -14.67649 -14.37655 -14.11890 -14.00771 -13.84140 -13.63555 -13.41193 -13.37057 -13.28725 -13.11627 -13.01429 -12.87958 -12.77690 -12.61056 -12.35119 -12.22130 -12.08449 -11.95164 -11.83728 -11.64355 -11.59263 -11.26728 -10.87420 -10.72010 -10.46945 -10.36702 -9.89984 -9.55687 -9.26768 -8.23303 -6.31781 0.75122 0.80012 1.37937 1.41225 1.51173 1.93822 2.41940 2.43312 2.55797 2.89464 3.07635 3.25922 3.42633 3.59090 3.69465 4.01159 4.05384 4.13430 4.22634 4.24746 4.30611 4.35188 4.38596 4.43478 4.46215 4.52765 4.55887 4.58900 4.71727 4.75378 4.77394 4.83008 4.87989 4.92662 4.96877 4.97769 4.99989 5.02993 5.11872 5.31412 5.36531 5.36884 5.45321 5.59661 5.63730 5.67514 5.78583 5.83794 5.95118 6.24748 6.31103 6.40418 6.69762 6.77011 7.33949 7.52342 8.85382 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010572 B = 0.003750 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.986557 B = 7464.362504 C = 9135.396935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 C -0.167 4.167 4 O -0.377 6.377 5 C 0.082 3.918 6 C 0.144 3.856 7 N -0.715 5.715 8 C 0.527 3.473 9 O -0.591 6.591 10 C 0.052 3.948 11 H 0.069 0.931 12 C -0.510 4.510 13 H 0.045 0.955 14 C 0.038 3.962 15 N -0.904 5.904 16 Si 0.948 3.052 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.274 1.274 20 C -0.043 4.043 21 C -0.106 4.106 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.129 4.129 25 C -0.144 4.144 26 C -0.172 4.172 27 C 0.040 3.960 28 O -0.381 6.381 29 C 0.018 3.982 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.407 0.593 40 H 0.267 0.733 41 H 0.093 0.907 42 H 0.135 0.865 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.109 0.891 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.074 0.926 49 H 0.117 0.883 50 H 0.099 0.901 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.894 -7.045 -12.000 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.008 3.992 3 C -0.225 4.225 4 O -0.297 6.297 5 C 0.042 3.958 6 C 0.020 3.980 7 N -0.366 5.366 8 C 0.317 3.683 9 O -0.473 6.473 10 C 0.031 3.969 11 H 0.087 0.913 12 C -0.548 4.548 13 H 0.063 0.937 14 C -0.164 4.164 15 N -0.542 5.542 16 Si 0.774 3.226 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.199 1.199 20 C -0.044 4.044 21 C -0.125 4.125 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.147 4.147 25 C -0.162 4.162 26 C -0.210 4.210 27 C -0.037 4.037 28 O -0.300 6.300 29 C -0.059 4.059 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.242 0.758 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.153 0.847 43 H 0.165 0.835 44 H 0.159 0.841 45 H 0.127 0.873 46 H 0.113 0.887 47 H 0.120 0.880 48 H 0.092 0.908 49 H 0.135 0.865 50 H 0.117 0.883 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.773 -7.491 -11.801 14.478 hybrid contribution -0.767 1.105 0.472 1.426 sum -4.540 -6.386 -11.329 13.774 Atomic orbital electron populations 1.22003 0.93567 1.02666 1.02668 1.22402 0.95057 0.92820 0.88884 1.22273 1.01188 0.96475 1.02531 1.88084 1.56098 1.52354 1.33151 1.23062 0.88975 0.89563 0.94233 1.21299 0.96994 0.89586 0.90142 1.45719 1.55831 1.10874 1.24143 1.21398 0.76056 0.90466 0.80416 1.90536 1.60128 1.24488 1.72153 1.17994 0.95465 0.91342 0.92127 0.91276 1.20669 1.00511 0.91985 1.41614 0.93680 1.25493 0.97801 0.97832 0.95278 1.69965 1.31522 1.07775 1.44892 0.85648 0.79635 0.78581 0.78719 1.19792 1.20644 1.19895 1.20151 0.93653 0.93963 0.96604 1.20852 0.98924 0.97798 0.94887 1.21336 0.94546 1.00821 0.98727 1.21286 0.95132 1.00000 0.99531 1.21313 1.00160 0.98488 0.94753 1.21166 0.93467 1.01309 1.00241 1.23553 1.01857 0.99214 0.96415 1.23648 0.97768 0.84068 0.98171 1.89182 1.83093 1.31028 1.26692 1.24207 0.97395 1.02106 0.82145 0.93204 0.89670 0.91868 0.89190 0.93296 0.92983 0.89899 0.92301 0.89719 0.75815 0.92321 0.88900 0.84713 0.83461 0.84086 0.87262 0.88673 0.88010 0.90787 0.86523 0.88343 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.56 71.98 0.69 -2.27 16 2 C 0.07 1.49 2.11 30.59 0.06 1.56 16 3 C -0.17 -3.96 9.44 71.98 0.68 -3.28 16 4 O -0.38 -10.68 9.37 -148.98 -1.40 -12.07 16 5 C 0.08 2.05 0.87 -9.78 -0.01 2.04 16 6 C 0.14 4.45 4.58 86.38 0.40 4.84 16 7 N -0.71 -27.51 5.25 -463.09 -2.43 -29.94 16 8 C 0.53 24.45 6.98 87.65 0.61 25.06 16 9 O -0.59 -29.53 15.31 -3.02 -0.05 -29.58 16 10 C 0.05 2.60 2.44 -13.03 -0.03 2.57 16 11 H 0.07 3.66 6.99 -2.39 -0.02 3.64 16 12 C -0.51 -27.11 7.59 25.60 0.19 -26.92 16 13 H 0.04 2.49 7.82 -2.91 -0.02 2.47 16 14 C 0.04 1.99 5.45 84.65 0.46 2.45 16 15 N -0.90 -49.08 12.77 21.45 0.27 -48.81 16 16 Si 0.95 42.74 29.54 68.60 2.03 44.77 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 C -0.04 -2.07 4.38 -19.86 -0.09 -2.16 16 21 C -0.11 -4.93 8.19 22.27 0.18 -4.75 16 22 C -0.14 -5.22 10.05 22.27 0.22 -5.00 16 23 C -0.14 -4.85 10.05 22.27 0.22 -4.62 16 24 C -0.13 -4.71 10.05 22.27 0.22 -4.49 16 25 C -0.14 -6.30 9.67 22.27 0.22 -6.09 16 26 C -0.17 -3.11 5.86 31.61 0.19 -2.92 16 27 C 0.04 0.64 7.48 72.49 0.54 1.18 16 28 O -0.38 -8.46 9.99 -148.98 -1.49 -9.95 16 29 C 0.02 0.45 5.76 72.49 0.42 0.87 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.13 7.96 -2.38 -0.02 1.11 16 33 H 0.09 1.92 4.90 -2.39 -0.01 1.91 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.05 1.30 6.04 -2.39 -0.01 1.28 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.08 2.50 8.07 -2.38 -0.02 2.48 16 39 H 0.41 15.69 8.13 -92.71 -0.75 14.93 16 40 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16 41 H 0.09 4.54 7.84 -2.91 -0.02 4.52 16 42 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 43 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 44 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 45 H 0.11 4.69 7.96 -2.91 -0.02 4.66 16 46 H 0.09 1.61 7.32 -2.39 -0.02 1.59 16 47 H 0.10 1.62 7.74 -2.39 -0.02 1.60 16 48 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.10 2.55 5.59 -2.39 -0.01 2.54 16 51 H 0.07 1.78 7.84 -2.39 -0.02 1.76 16 Total: -1.00 -65.34 407.73 2.29 -63.05 By element: Atomic # 1 Polarization: 44.28 SS G_CDS: 0.17 Total: 44.45 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 5.18 Total: -21.93 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -2.16 Total: -78.74 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -2.93 Total: -51.60 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -65.34 2.29 -63.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433562961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.271 kcal (2) G-P(sol) polarization free energy of solvation -65.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds