Wall clock time and date at job start Wed Apr 1 2020 04:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47401 * 2 1 4 4 O 1.42900 * 109.46974 * 120.00248 * 2 1 3 5 5 C 1.42902 * 113.99874 * 116.76920 * 4 2 1 6 6 C 1.52999 * 110.74742 * 299.34629 * 5 4 2 7 7 N 1.46497 * 109.47461 * 297.23522 * 6 5 4 8 8 C 1.34777 * 119.99967 * 184.98886 * 7 6 5 9 9 O 1.21287 * 120.00157 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.99969 * 179.97438 * 8 7 6 11 11 H 1.08996 * 109.46950 * 60.00281 * 10 8 7 12 12 C 1.50701 * 109.47031 * 300.00370 * 10 8 7 13 13 H 1.07997 * 119.99941 * 125.35276 * 12 10 8 14 14 C 1.37872 * 120.00005 * 305.34748 * 12 10 8 15 15 N 1.31513 * 120.00126 * 5.05860 * 14 12 10 16 16 Si 1.86802 * 120.00096 * 185.05837 * 14 12 10 17 17 H 1.48502 * 109.47323 * 89.99914 * 16 14 12 18 18 H 1.48499 * 109.46971 * 210.00397 * 16 14 12 19 19 H 1.48501 * 109.46684 * 330.00177 * 16 14 12 20 20 C 1.50703 * 109.47138 * 180.02562 * 10 8 7 21 21 C 1.38235 * 119.99757 * 305.16698 * 20 10 8 22 22 C 1.38241 * 119.99910 * 179.76545 * 21 20 10 23 23 C 1.38232 * 119.99777 * 0.50948 * 22 21 20 24 24 C 1.38242 * 120.00089 * 359.74310 * 23 22 21 25 25 C 1.38232 * 120.00069 * 125.44193 * 20 10 8 26 26 C 1.55557 * 110.84087 * 63.02628 * 5 4 2 27 27 C 1.54944 * 100.82658 * 84.08027 * 26 5 4 28 28 O 1.43648 * 105.22279 * 36.44305 * 27 26 5 29 29 C 1.43236 * 109.96844 * 335.52478 * 28 27 26 30 30 H 1.09004 * 109.46964 * 300.00313 * 1 2 3 31 31 H 1.09004 * 109.47045 * 59.99672 * 1 2 3 32 32 H 1.08997 * 109.47440 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47132 * 240.00187 * 2 1 3 34 34 H 1.09007 * 109.46824 * 54.85537 * 3 2 1 35 35 H 1.08998 * 109.47326 * 174.85649 * 3 2 1 36 36 H 1.09002 * 109.47277 * 294.86031 * 3 2 1 37 37 H 1.09008 * 109.47373 * 57.23832 * 6 5 4 38 38 H 1.09001 * 109.47156 * 177.23546 * 6 5 4 39 39 H 0.96993 * 120.00228 * 4.99455 * 7 6 5 40 40 H 0.97008 * 120.00309 * 180.02562 * 15 14 12 41 41 H 1.08005 * 120.00315 * 0.02562 * 21 20 10 42 42 H 1.07993 * 119.99982 * 180.22772 * 22 21 20 43 43 H 1.07996 * 120.00144 * 179.72466 * 23 22 21 44 44 H 1.07998 * 119.99859 * 179.97438 * 24 23 22 45 45 H 1.08001 * 119.99842 * 359.97438 * 25 20 10 46 46 H 1.09008 * 111.22604 * 326.17970 * 26 5 4 47 47 H 1.09000 * 111.13462 * 201.94508 * 26 5 4 48 48 H 1.09001 * 110.30653 * 277.47523 * 27 26 5 49 49 H 1.08997 * 110.30703 * 155.40738 * 27 26 5 50 50 H 1.08997 * 109.83284 * 121.22555 * 29 28 27 51 51 H 1.09010 * 109.82400 * 242.19759 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.7544 -1.8591 0.8887 6 6 1.8959 -2.8778 0.1364 7 7 0.7681 -3.2832 0.9790 8 6 -0.0703 -4.2526 0.5621 9 8 0.1091 -4.7897 -0.5105 10 6 -1.2302 -4.6700 1.4291 11 1 -1.8823 -3.8136 1.6004 12 6 -0.7125 -5.1793 2.7495 13 1 -1.0735 -4.7506 3.6727 14 6 0.2219 -6.1927 2.7791 15 7 0.7353 -6.6467 1.6566 16 14 0.7587 -6.9209 4.4134 17 1 -0.1251 -8.0625 4.7609 18 1 2.1618 -7.3956 4.3068 19 1 0.6663 -5.8833 5.4717 20 6 -2.0057 -5.7624 0.7389 21 6 -2.4885 -5.5644 -0.5411 22 6 -3.1957 -6.5682 -1.1761 23 6 -3.4291 -7.7661 -0.5270 24 6 -2.9508 -7.9622 0.7551 25 6 -2.2391 -6.9603 1.3881 26 6 4.0478 -1.5233 0.0925 27 6 5.0073 -1.1362 1.2459 28 8 4.6709 -2.0184 2.3285 29 6 3.3189 -2.4702 2.1892 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6034 1.9823 0.8404 35 1 3.1261 1.4439 0.0921 36 1 1.7539 1.9291 -0.9324 37 1 1.5197 -2.4280 -0.7825 38 1 2.4995 -3.7519 -0.1077 39 1 0.6247 -2.8539 1.8368 40 1 1.3925 -7.3599 1.6773 41 1 -2.3096 -4.6269 -1.0468 42 1 -3.5697 -6.4149 -2.1775 43 1 -3.9855 -8.5487 -1.0213 44 1 -3.1336 -8.8979 1.2624 45 1 -1.8654 -7.1134 2.3897 46 1 3.8880 -0.6836 -0.5841 47 1 4.4146 -2.3961 -0.4476 48 1 4.8470 -0.0988 1.5393 49 1 6.0434 -1.2872 0.9428 50 1 3.2971 -3.5581 2.1264 51 1 2.7277 -2.1359 3.0419 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433562962.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:44 Heat of formation + Delta-G solvation = -121.000981 kcal Electronic energy + Delta-G solvation = -32754.785435 eV Core-core repulsion = 28618.398907 eV Total energy + Delta-G solvation = -4136.386527 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.52624 -40.49747 -39.05396 -38.48282 -35.53412 -35.42219 -33.63960 -32.66865 -32.10523 -31.36415 -30.34310 -29.02155 -28.05909 -26.89394 -25.56764 -23.78904 -22.94901 -22.56753 -22.09590 -21.06836 -20.80797 -18.81268 -18.58772 -17.77436 -17.14340 -16.95087 -16.77222 -16.58345 -16.19138 -16.02843 -15.72368 -15.50598 -15.39190 -15.34922 -14.93793 -14.50141 -14.12149 -14.03749 -13.99505 -13.89372 -13.75514 -13.42134 -13.34525 -13.16202 -13.01038 -12.99081 -12.74168 -12.67231 -12.53120 -12.38941 -12.23667 -12.15867 -11.86110 -11.78319 -11.44977 -11.40988 -11.16979 -10.66697 -10.60430 -10.59673 -10.12897 -9.62439 -9.41888 -9.11022 -8.09242 -6.25854 0.84546 0.91565 1.40060 1.45792 1.51479 2.31993 2.37393 2.50686 2.78923 2.84296 3.19364 3.28007 3.37785 3.57198 3.72997 4.00325 4.10318 4.21093 4.24470 4.28756 4.31590 4.34853 4.42854 4.48670 4.50645 4.54173 4.65876 4.67699 4.77988 4.78433 4.82335 4.85882 4.91680 4.95236 4.96196 4.99215 5.06749 5.10560 5.15689 5.32176 5.39656 5.43067 5.53700 5.70384 5.86423 5.88311 5.90907 5.95384 5.98865 6.26518 6.41487 6.51486 6.76398 7.10072 7.42080 7.97705 8.90676 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.004103 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.831210 B = 6822.468059 C = 8396.341223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.072 3.928 3 C -0.153 4.153 4 O -0.366 6.366 5 C 0.087 3.913 6 C 0.123 3.877 7 N -0.718 5.718 8 C 0.558 3.442 9 O -0.586 6.586 10 C 0.047 3.953 11 H 0.063 0.937 12 C -0.535 4.535 13 H 0.068 0.932 14 C 0.047 3.953 15 N -0.871 5.871 16 Si 0.931 3.069 17 H -0.276 1.276 18 H -0.295 1.295 19 H -0.263 1.263 20 C -0.037 4.037 21 C -0.121 4.121 22 C -0.143 4.143 23 C -0.141 4.141 24 C -0.153 4.153 25 C -0.092 4.092 26 C -0.171 4.171 27 C 0.054 3.946 28 O -0.401 6.401 29 C 0.071 3.929 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.402 0.598 40 H 0.256 0.744 41 H 0.100 0.900 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.124 0.876 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.091 0.909 48 H 0.073 0.927 49 H 0.105 0.895 50 H 0.067 0.933 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 12.938 -4.250 13.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.015 3.985 3 C -0.210 4.210 4 O -0.285 6.285 5 C 0.046 3.954 6 C -0.002 4.002 7 N -0.370 5.370 8 C 0.348 3.652 9 O -0.465 6.465 10 C 0.026 3.974 11 H 0.081 0.919 12 C -0.572 4.572 13 H 0.086 0.914 14 C -0.158 4.158 15 N -0.506 5.506 16 Si 0.758 3.242 17 H -0.202 1.202 18 H -0.221 1.221 19 H -0.187 1.187 20 C -0.038 4.038 21 C -0.139 4.139 22 C -0.161 4.161 23 C -0.159 4.159 24 C -0.171 4.171 25 C -0.110 4.110 26 C -0.209 4.209 27 C -0.021 4.021 28 O -0.320 6.320 29 C -0.006 4.006 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.236 0.764 40 H 0.066 0.934 41 H 0.118 0.882 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.142 0.858 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.110 0.890 48 H 0.091 0.909 49 H 0.123 0.877 50 H 0.085 0.915 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.948 12.442 -4.751 13.641 hybrid contribution 0.380 -0.777 0.897 1.246 sum 3.329 11.665 -3.854 12.729 Atomic orbital electron populations 1.22133 0.95044 1.01888 1.02956 1.22290 0.94308 0.93890 0.87999 1.22064 1.01764 0.93983 1.03180 1.88018 1.71047 1.37276 1.32197 1.23106 0.91379 0.85694 0.95182 1.21511 0.88440 0.96334 0.93890 1.45511 1.28593 1.40006 1.22859 1.20826 0.83880 0.75817 0.84711 1.90495 1.75512 1.54677 1.25861 1.17984 0.91278 0.93839 0.94292 0.91860 1.20875 1.24963 1.20261 0.91133 0.91370 1.25459 0.95633 0.96662 0.97999 1.70186 1.27181 1.26444 1.26744 0.85960 0.77066 0.79340 0.81871 1.20208 1.22120 1.18729 1.19950 0.94127 0.96152 0.93542 1.20998 0.98594 0.99413 0.94944 1.21201 1.00540 0.94134 1.00182 1.21197 1.01783 0.97784 0.95096 1.21342 1.00218 0.99132 0.96368 1.21249 0.96187 0.92979 1.00567 1.23887 0.93812 1.04254 0.98939 1.23510 0.99821 0.94102 0.84714 1.88385 1.28590 1.65903 1.49169 1.22971 0.82685 0.98122 0.96801 0.91928 0.90098 0.94022 0.91391 0.92150 0.91685 0.89814 0.91926 0.93435 0.76360 0.93433 0.88167 0.84910 0.84304 0.85760 0.86963 0.86941 0.89037 0.90881 0.87685 0.91462 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 9.56 71.98 0.69 -2.92 16 2 C 0.07 1.51 2.03 30.60 0.06 1.57 16 3 C -0.15 -2.37 9.53 71.98 0.69 -1.68 16 4 O -0.37 -9.49 9.56 -148.98 -1.42 -10.91 16 5 C 0.09 2.38 0.42 -9.44 0.00 2.37 16 6 C 0.12 4.18 4.35 86.38 0.38 4.55 16 7 N -0.72 -28.21 4.97 -463.04 -2.30 -30.52 16 8 C 0.56 26.34 5.30 87.66 0.46 26.80 16 9 O -0.59 -31.46 14.49 -3.05 -0.04 -31.51 16 10 C 0.05 2.24 2.73 -13.03 -0.04 2.21 16 11 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 12 C -0.53 -26.16 7.30 25.60 0.19 -25.97 16 13 H 0.07 3.25 7.82 -2.91 -0.02 3.23 16 14 C 0.05 2.37 3.55 84.65 0.30 2.67 16 15 N -0.87 -47.71 10.83 21.45 0.23 -47.48 16 16 Si 0.93 41.02 29.54 68.60 2.03 43.05 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 19 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 20 C -0.04 -1.76 4.60 -19.87 -0.09 -1.85 16 21 C -0.12 -5.38 8.31 22.27 0.18 -5.19 16 22 C -0.14 -5.49 10.05 22.27 0.22 -5.26 16 23 C -0.14 -5.17 10.05 22.27 0.22 -4.95 16 24 C -0.15 -6.22 10.05 22.27 0.22 -5.99 16 25 C -0.09 -4.34 8.23 22.27 0.18 -4.16 16 26 C -0.17 -3.60 5.99 32.14 0.19 -3.40 16 27 C 0.05 1.16 7.77 72.65 0.56 1.72 16 28 O -0.40 -12.05 11.36 -148.98 -1.69 -13.74 16 29 C 0.07 2.24 6.65 72.45 0.48 2.72 16 30 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.04 1.14 7.96 -2.39 -0.02 1.12 16 33 H 0.07 1.38 5.57 -2.39 -0.01 1.37 16 34 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.06 0.92 7.99 -2.39 -0.02 0.91 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 2.05 6.67 -2.38 -0.02 2.03 16 38 H 0.05 1.86 8.12 -2.39 -0.02 1.85 16 39 H 0.40 15.21 8.03 -92.71 -0.74 14.46 16 40 H 0.26 14.04 8.31 -92.70 -0.77 13.27 16 41 H 0.10 4.37 7.62 -2.91 -0.02 4.35 16 42 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 43 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 44 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 45 H 0.11 5.62 5.58 -2.91 -0.02 5.61 16 46 H 0.11 1.82 6.54 -2.38 -0.02 1.80 16 47 H 0.09 1.94 8.03 -2.39 -0.02 1.92 16 48 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.07 2.45 7.81 -2.39 -0.02 2.43 16 51 H 0.08 2.46 8.07 -2.38 -0.02 2.44 16 Total: -1.00 -64.28 403.80 1.89 -62.39 By element: Atomic # 1 Polarization: 45.30 SS G_CDS: 0.18 Total: 45.48 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 4.91 Total: -16.76 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -2.07 Total: -78.00 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: -3.16 Total: -56.16 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -64.28 1.89 -62.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433562962.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.613 kcal (2) G-P(sol) polarization free energy of solvation -64.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds