Wall clock time and date at job start Wed Apr 1 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00367 * 2 1 4 4 C 1.53001 * 109.47603 * 179.97438 * 3 2 1 5 5 C 1.52998 * 110.30198 * 302.18126 * 4 3 2 6 6 O 1.42896 * 109.47454 * 57.82001 * 5 4 3 7 7 C 1.54286 * 110.33785 * 64.46269 * 4 3 2 8 8 C 1.54789 * 104.92062 * 118.68439 * 7 4 3 9 9 N 1.48144 * 104.41983 * 24.15875 * 8 7 4 10 10 C 1.34774 * 127.83913 * 140.36350 * 9 8 7 11 11 O 1.21283 * 120.00333 * 179.68834 * 10 9 8 12 12 C 1.50706 * 119.99917 * 359.69455 * 10 9 8 13 13 C 1.53002 * 109.47156 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46812 * 305.99984 * 13 12 10 15 15 C 1.50701 * 109.47227 * 65.99769 * 13 12 10 16 16 H 1.08000 * 119.99930 * 35.43149 * 15 13 12 17 17 C 1.37878 * 120.00078 * 215.43174 * 15 13 12 18 18 N 1.31517 * 119.99624 * 175.73551 * 17 15 13 19 19 Si 1.86792 * 119.99979 * 355.74204 * 17 15 13 20 20 H 1.48499 * 109.47300 * 94.38061 * 19 17 15 21 21 H 1.48506 * 109.47163 * 214.37925 * 19 17 15 22 22 H 1.48509 * 109.47246 * 334.37651 * 19 17 15 23 23 C 1.50698 * 109.47222 * 185.99990 * 13 12 10 24 24 C 1.38235 * 120.00045 * 113.55575 * 23 13 12 25 25 C 1.38231 * 119.99768 * 179.97438 * 24 23 13 26 26 C 1.38233 * 120.00471 * 0.27790 * 25 24 23 27 27 C 1.38236 * 119.99654 * 359.51126 * 26 25 24 28 28 C 1.38235 * 119.99679 * 293.53803 * 23 13 12 29 29 C 1.48149 * 104.32629 * 320.11482 * 9 8 7 30 30 H 1.09005 * 109.46917 * 300.00478 * 1 2 3 31 31 H 1.09004 * 109.46839 * 59.99354 * 1 2 3 32 32 H 1.08997 * 109.47238 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47282 * 59.99702 * 3 2 1 34 34 H 1.09004 * 109.47435 * 300.00274 * 3 2 1 35 35 H 1.09006 * 109.47001 * 177.82411 * 5 4 3 36 36 H 1.08999 * 109.47068 * 297.81462 * 5 4 3 37 37 H 0.96702 * 113.99965 * 179.97438 * 6 5 4 38 38 H 1.09006 * 110.34504 * 237.74333 * 7 4 3 39 39 H 1.09004 * 110.34671 * 359.89651 * 7 4 3 40 40 H 1.09008 * 110.54130 * 265.42443 * 8 7 4 41 41 H 1.08996 * 110.46855 * 142.86601 * 8 7 4 42 42 H 1.08995 * 109.46855 * 59.99126 * 12 10 9 43 43 H 1.09004 * 109.46410 * 299.99487 * 12 10 9 44 44 H 0.97005 * 119.99582 * 179.97438 * 18 17 15 45 45 H 1.07997 * 119.99958 * 359.97438 * 24 23 13 46 46 H 1.08000 * 119.99557 * 180.02562 * 25 24 23 47 47 H 1.07996 * 120.00038 * 179.72544 * 26 25 24 48 48 H 1.07998 * 119.99986 * 180.27495 * 27 26 25 49 49 H 1.08002 * 120.00696 * 359.97317 * 28 23 13 50 50 H 1.08997 * 110.41197 * 158.62717 * 29 9 8 51 51 H 1.09004 * 110.40426 * 280.94241 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0039 0.3810 1.2155 6 8 3.3924 -0.9103 1.1970 7 6 4.0214 0.5203 -1.3044 8 6 4.9200 1.5830 -1.9819 9 7 5.3775 2.4444 -0.8669 10 6 6.5998 2.9825 -0.6856 11 8 6.8190 3.6769 0.2843 12 6 7.6942 2.7216 -1.6883 13 6 8.9702 3.4430 -1.2499 14 1 8.7532 4.4988 -1.0877 15 6 9.4781 2.8321 0.0307 16 1 9.3740 1.7707 0.2010 17 6 10.0756 3.6281 0.9848 18 7 10.4429 3.1105 2.1367 19 14 10.3633 5.4415 0.6414 20 1 9.2295 6.2336 1.1820 21 1 11.6252 5.8747 1.2934 22 1 10.4639 5.6579 -0.8244 23 6 10.0193 3.3050 -2.3230 24 6 10.4457 4.4199 -3.0203 25 6 11.4083 4.2933 -4.0042 26 6 11.9405 3.0511 -4.2948 27 6 11.5173 1.9369 -3.5945 28 6 10.5555 2.0636 -2.6097 29 6 4.1849 2.5853 0.0007 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 5.0878 0.2704 1.1820 36 1 3.7203 0.9044 2.1286 37 1 3.6450 -1.4757 1.9398 38 1 4.5953 -0.3791 -1.0809 39 1 3.1733 0.2784 -1.9451 40 1 4.3461 2.1664 -2.7020 41 1 5.7714 1.1077 -2.4690 42 1 7.3862 3.0907 -2.6665 43 1 7.8845 1.6499 -1.7477 44 1 10.8636 3.6705 2.8078 45 1 10.0266 5.3897 -2.7963 46 1 11.7417 5.1644 -4.5486 47 1 12.6894 2.9516 -5.0665 48 1 11.9363 0.9670 -3.8185 49 1 10.2230 1.1926 -2.0644 50 1 4.4810 2.8669 1.0112 51 1 3.4989 3.3242 -0.4134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001449747455.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:33 Heat of formation + Delta-G solvation = -96.254362 kcal Electronic energy + Delta-G solvation = -31522.617786 eV Core-core repulsion = 27387.304353 eV Total energy + Delta-G solvation = -4135.313433 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.10234 -38.80826 -38.10106 -36.92304 -35.95084 -34.08249 -32.37928 -31.61231 -30.20958 -29.50185 -29.07977 -27.37095 -26.39545 -25.49438 -24.56640 -23.07567 -22.44737 -21.83465 -19.84465 -19.30000 -18.50027 -17.26431 -16.93096 -16.72371 -16.33973 -16.07982 -15.91824 -15.55626 -15.02490 -14.76975 -14.45529 -14.29678 -14.16461 -13.98811 -13.70506 -13.30479 -13.12047 -12.73445 -12.64029 -12.56633 -12.48918 -12.26647 -12.05243 -11.94444 -11.74931 -11.70628 -11.36580 -11.15712 -11.03922 -10.86670 -10.72715 -10.53584 -10.45231 -10.34786 -9.88076 -9.79318 -9.65463 -9.61523 -9.16246 -8.98267 -8.44095 -8.33352 -8.19466 -7.80940 -5.97737 -3.94820 2.09814 2.14446 3.24361 3.40739 3.44007 3.48745 3.50732 3.72026 4.10664 4.51997 4.52629 4.59179 4.76423 4.90543 5.08552 5.14449 5.18991 5.21977 5.25950 5.33559 5.37712 5.40847 5.49414 5.52089 5.52645 5.55909 5.61999 5.68989 5.69138 5.73821 5.82747 5.93048 5.95474 6.02394 6.06807 6.13810 6.21155 6.25019 6.32846 6.49449 6.65375 6.71275 6.84616 7.01441 7.12738 7.14465 7.27228 7.57819 7.73363 7.75774 7.82927 8.02523 8.53272 8.93888 9.01187 9.67288 11.15282 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.002983 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.346524 B = 9383.087096 C =10336.610312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.080 3.920 4 C -0.070 4.070 5 C 0.093 3.907 6 O -0.550 6.550 7 C -0.111 4.111 8 C 0.098 3.902 9 N -0.636 5.636 10 C 0.538 3.462 11 O -0.498 6.498 12 C -0.110 4.110 13 C 0.057 3.943 14 H 0.049 0.951 15 C -0.489 4.489 16 H 0.070 0.930 17 C 0.087 3.913 18 N -0.898 5.898 19 Si 0.867 3.133 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.253 1.253 23 C -0.040 4.040 24 C -0.134 4.134 25 C -0.128 4.128 26 C -0.149 4.149 27 C -0.128 4.128 28 C -0.100 4.100 29 C 0.118 3.882 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.041 0.959 37 H 0.370 0.630 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.261 0.739 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.110 0.890 49 H 0.120 0.880 50 H 0.086 0.914 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.561 -4.841 -9.307 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.002 3.998 4 C -0.071 4.071 5 C 0.015 3.985 6 O -0.353 6.353 7 C -0.150 4.150 8 C -0.025 4.025 9 N -0.375 5.375 10 C 0.327 3.673 11 O -0.369 6.369 12 C -0.150 4.150 13 C 0.038 3.962 14 H 0.067 0.933 15 C -0.526 4.526 16 H 0.088 0.912 17 C -0.116 4.116 18 N -0.536 5.536 19 Si 0.694 3.306 20 H -0.203 1.203 21 H -0.221 1.221 22 H -0.177 1.177 23 C -0.041 4.041 24 C -0.152 4.152 25 C -0.146 4.146 26 C -0.167 4.167 27 C -0.146 4.146 28 C -0.118 4.118 29 C -0.005 4.005 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.215 0.785 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.071 0.929 45 H 0.129 0.871 46 H 0.126 0.874 47 H 0.126 0.874 48 H 0.128 0.872 49 H 0.138 0.862 50 H 0.104 0.896 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.345 -4.260 -9.104 18.343 hybrid contribution 0.312 1.002 0.591 1.204 sum -15.033 -3.258 -8.513 17.581 Atomic orbital electron populations 1.22705 0.82373 1.02356 0.99299 1.88139 1.17989 1.26270 1.95095 1.22403 0.92193 0.85431 0.99736 1.21538 0.93572 0.95554 0.96412 1.22046 0.96282 0.84372 0.95763 1.86640 1.71838 1.25737 1.51106 1.22542 0.99390 0.98129 0.94919 1.22478 0.98341 0.91752 0.89944 1.49177 1.10220 1.52791 1.25280 1.20571 0.80476 0.78838 0.87389 1.90760 1.79508 1.36773 1.29874 1.21641 0.94633 1.02751 0.95972 1.18130 0.87876 0.97414 0.92805 0.93286 1.20582 1.38300 0.95846 0.97854 0.91176 1.24868 0.94292 0.97991 0.94411 1.69894 1.41485 1.36309 1.05901 0.87007 0.77221 0.86668 0.79666 1.20341 1.22086 1.17683 1.20758 0.97902 0.92332 0.93111 1.21147 0.98870 0.98575 0.96618 1.20961 0.98092 0.96891 0.98648 1.20861 1.01475 0.93188 1.01180 1.21057 0.98308 0.97921 0.97348 1.20979 0.96511 0.97996 0.96358 1.22013 0.87264 0.93873 0.97373 0.94642 0.94712 0.89918 0.93565 0.93367 0.93085 0.94062 0.78508 0.90300 0.90313 0.91620 0.90049 0.91395 0.89775 0.92909 0.87056 0.87416 0.87448 0.87192 0.86216 0.89557 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.36 -4.07 8.29 -57.55 -0.48 -4.55 16 3 C 0.08 0.82 4.53 37.16 0.17 0.99 16 4 C -0.07 -0.82 0.73 -153.11 -0.11 -0.93 16 5 C 0.09 1.18 5.64 37.16 0.21 1.39 16 6 O -0.55 -6.60 11.26 -57.55 -0.65 -7.25 16 7 C -0.11 -1.26 5.96 -25.12 -0.15 -1.41 16 8 C 0.10 1.14 6.94 -2.19 -0.02 1.13 16 9 N -0.64 -9.83 3.31 -169.05 -0.56 -10.39 16 10 C 0.54 10.73 7.67 -10.98 -0.08 10.65 16 11 O -0.50 -12.38 15.28 5.55 0.08 -12.30 16 12 C -0.11 -2.07 3.94 -27.88 -0.11 -2.18 16 13 C 0.06 1.30 1.17 -92.92 -0.11 1.19 16 14 H 0.05 1.19 5.06 -51.93 -0.26 0.93 16 15 C -0.49 -13.36 6.86 -34.44 -0.24 -13.60 16 16 H 0.07 2.08 8.06 -52.49 -0.42 1.65 16 17 C 0.09 2.54 5.47 -17.82 -0.10 2.45 16 18 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 19 Si 0.87 22.49 26.94 -169.99 -4.58 17.91 16 20 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.29 -7.68 7.11 56.52 0.40 -7.27 16 22 H -0.25 -6.02 4.53 56.52 0.26 -5.77 16 23 C -0.04 -0.84 4.57 -104.63 -0.48 -1.32 16 24 C -0.13 -2.61 8.55 -39.59 -0.34 -2.95 16 25 C -0.13 -2.18 10.05 -39.59 -0.40 -2.58 16 26 C -0.15 -2.41 10.05 -39.58 -0.40 -2.81 16 27 C -0.13 -2.18 10.05 -39.58 -0.40 -2.57 16 28 C -0.10 -1.95 8.93 -39.58 -0.35 -2.30 16 29 C 0.12 1.58 6.13 -2.41 -0.01 1.57 16 30 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.37 3.09 9.12 45.56 0.42 3.50 16 38 H 0.08 0.98 7.62 -51.93 -0.40 0.59 16 39 H 0.08 0.81 7.61 -51.93 -0.40 0.42 16 40 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 41 H 0.08 0.91 7.31 -51.93 -0.38 0.53 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.08 1.50 7.86 -51.93 -0.41 1.09 16 44 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 45 H 0.11 2.12 7.09 -52.49 -0.37 1.75 16 46 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 47 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 48 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 49 H 0.12 2.31 7.88 -52.49 -0.41 1.90 16 50 H 0.09 1.31 7.60 -51.93 -0.39 0.91 16 51 H 0.07 0.80 7.87 -51.93 -0.41 0.39 16 LS Contribution 404.88 15.07 6.10 6.10 Total: -1.00 -35.27 404.88 -8.90 -44.17 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.79 Total: 5.52 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -1.80 Total: -11.93 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.21 Total: -37.68 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -1.04 Total: -24.10 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.58 Total: 17.91 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.27 -8.90 -44.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449747455.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.085 kcal (2) G-P(sol) polarization free energy of solvation -35.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds