Wall clock time and date at job start Wed Apr 1 2020 05:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00367 * 2 1 4 4 C 1.53001 * 109.47603 * 179.97438 * 3 2 1 5 5 C 1.52998 * 110.30198 * 302.18126 * 4 3 2 6 6 O 1.42896 * 109.47454 * 57.82001 * 5 4 3 7 7 C 1.54286 * 110.33785 * 64.46269 * 4 3 2 8 8 C 1.54789 * 104.92062 * 118.68439 * 7 4 3 9 9 N 1.48144 * 104.41983 * 24.15875 * 8 7 4 10 10 C 1.34774 * 127.83913 * 140.36350 * 9 8 7 11 11 O 1.21283 * 120.00333 * 179.68834 * 10 9 8 12 12 C 1.50706 * 119.99917 * 359.69455 * 10 9 8 13 13 C 1.53002 * 109.47156 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46812 * 305.99984 * 13 12 10 15 15 C 1.50701 * 109.47227 * 65.99769 * 13 12 10 16 16 H 1.08000 * 119.99930 * 35.43149 * 15 13 12 17 17 C 1.37878 * 120.00078 * 215.43174 * 15 13 12 18 18 N 1.31517 * 119.99624 * 175.73551 * 17 15 13 19 19 Si 1.86792 * 119.99979 * 355.74204 * 17 15 13 20 20 H 1.48499 * 109.47300 * 94.38061 * 19 17 15 21 21 H 1.48506 * 109.47163 * 214.37925 * 19 17 15 22 22 H 1.48509 * 109.47246 * 334.37651 * 19 17 15 23 23 C 1.50698 * 109.47222 * 185.99990 * 13 12 10 24 24 C 1.38235 * 120.00045 * 113.55575 * 23 13 12 25 25 C 1.38231 * 119.99768 * 179.97438 * 24 23 13 26 26 C 1.38233 * 120.00471 * 0.27790 * 25 24 23 27 27 C 1.38236 * 119.99654 * 359.51126 * 26 25 24 28 28 C 1.38235 * 119.99679 * 293.53803 * 23 13 12 29 29 C 1.48149 * 104.32629 * 320.11482 * 9 8 7 30 30 H 1.09005 * 109.46917 * 300.00478 * 1 2 3 31 31 H 1.09004 * 109.46839 * 59.99354 * 1 2 3 32 32 H 1.08997 * 109.47238 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47282 * 59.99702 * 3 2 1 34 34 H 1.09004 * 109.47435 * 300.00274 * 3 2 1 35 35 H 1.09006 * 109.47001 * 177.82411 * 5 4 3 36 36 H 1.08999 * 109.47068 * 297.81462 * 5 4 3 37 37 H 0.96702 * 113.99965 * 179.97438 * 6 5 4 38 38 H 1.09006 * 110.34504 * 237.74333 * 7 4 3 39 39 H 1.09004 * 110.34671 * 359.89651 * 7 4 3 40 40 H 1.09008 * 110.54130 * 265.42443 * 8 7 4 41 41 H 1.08996 * 110.46855 * 142.86601 * 8 7 4 42 42 H 1.08995 * 109.46855 * 59.99126 * 12 10 9 43 43 H 1.09004 * 109.46410 * 299.99487 * 12 10 9 44 44 H 0.97005 * 119.99582 * 179.97438 * 18 17 15 45 45 H 1.07997 * 119.99958 * 359.97438 * 24 23 13 46 46 H 1.08000 * 119.99557 * 180.02562 * 25 24 23 47 47 H 1.07996 * 120.00038 * 179.72544 * 26 25 24 48 48 H 1.07998 * 119.99986 * 180.27495 * 27 26 25 49 49 H 1.08002 * 120.00696 * 359.97317 * 28 23 13 50 50 H 1.08997 * 110.41197 * 158.62717 * 29 9 8 51 51 H 1.09004 * 110.40426 * 280.94241 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0039 0.3810 1.2155 6 8 3.3924 -0.9103 1.1970 7 6 4.0214 0.5203 -1.3044 8 6 4.9200 1.5830 -1.9819 9 7 5.3775 2.4444 -0.8669 10 6 6.5998 2.9825 -0.6856 11 8 6.8190 3.6769 0.2843 12 6 7.6942 2.7216 -1.6883 13 6 8.9702 3.4430 -1.2499 14 1 8.7532 4.4988 -1.0877 15 6 9.4781 2.8321 0.0307 16 1 9.3740 1.7707 0.2010 17 6 10.0756 3.6281 0.9848 18 7 10.4429 3.1105 2.1367 19 14 10.3633 5.4415 0.6414 20 1 9.2295 6.2336 1.1820 21 1 11.6252 5.8747 1.2934 22 1 10.4639 5.6579 -0.8244 23 6 10.0193 3.3050 -2.3230 24 6 10.4457 4.4199 -3.0203 25 6 11.4083 4.2933 -4.0042 26 6 11.9405 3.0511 -4.2948 27 6 11.5173 1.9369 -3.5945 28 6 10.5555 2.0636 -2.6097 29 6 4.1849 2.5853 0.0007 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 5.0878 0.2704 1.1820 36 1 3.7203 0.9044 2.1286 37 1 3.6450 -1.4757 1.9398 38 1 4.5953 -0.3791 -1.0809 39 1 3.1733 0.2784 -1.9451 40 1 4.3461 2.1664 -2.7020 41 1 5.7714 1.1077 -2.4690 42 1 7.3862 3.0907 -2.6665 43 1 7.8845 1.6499 -1.7477 44 1 10.8636 3.6705 2.8078 45 1 10.0266 5.3897 -2.7963 46 1 11.7417 5.1644 -4.5486 47 1 12.6894 2.9516 -5.0665 48 1 11.9363 0.9670 -3.8185 49 1 10.2230 1.1926 -2.0644 50 1 4.4810 2.8669 1.0112 51 1 3.4989 3.3242 -0.4134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001449747455.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:32 Heat of formation + Delta-G solvation = -120.284176 kcal Electronic energy + Delta-G solvation = -31523.659797 eV Core-core repulsion = 27387.304353 eV Total energy + Delta-G solvation = -4136.355444 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.30310 -40.19437 -39.39616 -37.88946 -37.03629 -35.84428 -33.82976 -33.36761 -31.59765 -30.56322 -30.46968 -28.45956 -27.76782 -26.58213 -25.76544 -24.28840 -23.87221 -23.24789 -21.36735 -20.35296 -19.88362 -19.00907 -18.24965 -18.13577 -17.28446 -17.21050 -16.94204 -16.64177 -16.45559 -16.24446 -15.83113 -15.70035 -15.35284 -15.16494 -14.95497 -14.76396 -14.54387 -14.30201 -14.06608 -13.87223 -13.60245 -13.48848 -13.31816 -13.27319 -13.10007 -12.86203 -12.80905 -12.61676 -12.21568 -12.12210 -12.00598 -11.89462 -11.80664 -11.74585 -11.49669 -11.38541 -11.05167 -10.81213 -10.74699 -10.51963 -10.40461 -9.64858 -9.60017 -9.29237 -8.22345 -6.19188 0.69256 0.73868 1.32366 1.36105 1.43049 1.85135 2.05037 2.41724 2.85480 3.09259 3.17405 3.23673 3.56461 3.73758 3.98803 4.07687 4.13796 4.18087 4.30228 4.31672 4.34193 4.37377 4.42537 4.45822 4.47165 4.48891 4.51013 4.62765 4.63248 4.64175 4.67599 4.74176 4.83957 4.86074 4.89097 4.94709 4.95659 5.04477 5.14756 5.19826 5.27079 5.38080 5.41390 5.48822 5.68693 5.78074 5.83919 6.03503 6.33292 6.37087 6.41301 6.66505 6.79810 6.91858 7.42935 7.45275 8.94837 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.002983 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.346524 B = 9383.087096 C =10336.610312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.381 6.381 3 C 0.083 3.917 4 C -0.066 4.066 5 C 0.097 3.903 6 O -0.554 6.554 7 C -0.104 4.104 8 C 0.096 3.904 9 N -0.634 5.634 10 C 0.531 3.469 11 O -0.563 6.563 12 C -0.103 4.103 13 C 0.060 3.940 14 H 0.032 0.968 15 C -0.466 4.466 16 H 0.031 0.969 17 C 0.023 3.977 18 N -0.954 5.954 19 Si 0.917 3.083 20 H -0.291 1.291 21 H -0.296 1.296 22 H -0.219 1.219 23 C -0.064 4.064 24 C -0.150 4.150 25 C -0.125 4.125 26 C -0.139 4.139 27 C -0.126 4.126 28 C -0.119 4.119 29 C 0.116 3.884 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.021 0.979 36 H 0.041 0.959 37 H 0.384 0.616 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.257 0.743 45 H 0.111 0.889 46 H 0.141 0.859 47 H 0.146 0.854 48 H 0.138 0.862 49 H 0.106 0.894 50 H 0.058 0.942 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.433 -4.552 -13.532 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.299 6.299 3 C 0.006 3.994 4 C -0.067 4.067 5 C 0.018 3.982 6 O -0.360 6.360 7 C -0.142 4.142 8 C -0.026 4.026 9 N -0.370 5.370 10 C 0.322 3.678 11 O -0.439 6.439 12 C -0.143 4.143 13 C 0.040 3.960 14 H 0.051 0.949 15 C -0.503 4.503 16 H 0.049 0.951 17 C -0.173 4.173 18 N -0.596 5.596 19 Si 0.743 3.257 20 H -0.218 1.218 21 H -0.223 1.223 22 H -0.141 1.141 23 C -0.065 4.065 24 C -0.168 4.168 25 C -0.142 4.142 26 C -0.157 4.157 27 C -0.144 4.144 28 C -0.137 4.137 29 C -0.007 4.007 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.039 0.961 36 H 0.059 0.941 37 H 0.231 0.769 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.106 0.894 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.066 0.934 45 H 0.129 0.871 46 H 0.158 0.842 47 H 0.164 0.836 48 H 0.156 0.844 49 H 0.124 0.876 50 H 0.077 0.923 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.267 -4.017 -13.397 21.453 hybrid contribution 0.485 0.732 1.803 2.005 sum -15.782 -3.285 -11.594 19.857 Atomic orbital electron populations 1.22852 0.80763 1.03198 1.00270 1.88091 1.19779 1.26729 1.95317 1.22364 0.90527 0.85501 1.00987 1.21470 0.95035 0.94109 0.96114 1.21943 0.94537 0.85056 0.96622 1.86602 1.71645 1.25568 1.52184 1.22482 0.99665 0.97216 0.94809 1.22789 0.99006 0.91625 0.89146 1.49103 1.09496 1.51807 1.26610 1.20747 0.81897 0.78450 0.86719 1.90731 1.80961 1.39990 1.32268 1.21539 0.92830 1.02711 0.97243 1.17987 0.90150 0.96249 0.91590 0.94945 1.20789 1.35860 0.93927 0.99756 0.95079 1.25625 0.95191 1.02025 0.94450 1.70045 1.44531 1.37679 1.07312 0.86203 0.76143 0.81931 0.81374 1.21811 1.22338 1.14111 1.20472 0.98134 0.93752 0.94093 1.21256 0.99927 0.97888 0.97698 1.21338 0.96691 0.98622 0.97585 1.21334 1.01079 0.92260 1.00992 1.21387 0.97045 0.99872 0.96067 1.20997 0.97927 0.97122 0.97625 1.22176 0.86875 0.95756 0.95937 0.94127 0.93231 0.89244 0.93205 0.91195 0.96118 0.94068 0.76858 0.91881 0.88341 0.88337 0.89442 0.87806 0.89167 0.93391 0.87087 0.84158 0.83579 0.84415 0.87552 0.92300 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.38 -7.88 8.29 -127.64 -1.06 -8.94 16 3 C 0.08 1.54 4.53 71.98 0.33 1.86 16 4 C -0.07 -1.50 0.73 -51.27 -0.04 -1.54 16 5 C 0.10 2.53 5.64 71.98 0.41 2.94 16 6 O -0.55 -13.27 11.26 -127.64 -1.44 -14.70 16 7 C -0.10 -2.16 5.96 31.64 0.19 -1.97 16 8 C 0.10 2.02 6.94 86.67 0.60 2.62 16 9 N -0.63 -19.44 3.31 -807.15 -2.67 -22.11 16 10 C 0.53 21.79 7.67 87.66 0.67 22.47 16 11 O -0.56 -29.55 15.28 -3.04 -0.05 -29.59 16 12 C -0.10 -3.90 3.94 29.85 0.12 -3.79 16 13 C 0.06 2.76 1.17 -12.29 -0.01 2.74 16 14 H 0.03 1.60 5.06 -2.39 -0.01 1.59 16 15 C -0.47 -26.78 6.86 25.60 0.18 -26.60 16 16 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 17 C 0.02 1.43 5.47 84.65 0.46 1.89 16 18 N -0.95 -63.32 13.96 21.45 0.30 -63.02 16 19 Si 0.92 48.10 26.94 68.60 1.85 49.95 16 20 H -0.29 -15.79 7.11 99.48 0.71 -15.08 16 21 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 22 H -0.22 -10.11 4.53 99.48 0.45 -9.66 16 23 C -0.06 -2.61 4.57 -19.87 -0.09 -2.70 16 24 C -0.15 -5.46 8.55 22.27 0.19 -5.27 16 25 C -0.12 -3.71 10.05 22.27 0.22 -3.48 16 26 C -0.14 -3.82 10.05 22.27 0.22 -3.60 16 27 C -0.13 -3.86 10.05 22.27 0.22 -3.64 16 28 C -0.12 -4.49 8.93 22.27 0.20 -4.29 16 29 C 0.12 3.06 6.13 86.53 0.53 3.59 16 30 H 0.04 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.38 6.48 9.12 -74.06 -0.68 5.80 16 38 H 0.06 1.53 7.62 -2.38 -0.02 1.51 16 39 H 0.10 1.72 7.61 -2.38 -0.02 1.70 16 40 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.09 1.76 7.31 -2.39 -0.02 1.74 16 42 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 43 H 0.09 3.26 7.86 -2.38 -0.02 3.25 16 44 H 0.26 16.30 8.31 -92.70 -0.77 15.53 16 45 H 0.11 3.98 7.09 -2.91 -0.02 3.96 16 46 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 47 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 48 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 49 H 0.11 4.20 7.88 -2.91 -0.02 4.18 16 50 H 0.06 1.89 7.60 -2.39 -0.02 1.87 16 51 H 0.10 2.06 7.87 -2.39 -0.02 2.04 16 Total: -1.00 -82.71 404.88 2.57 -80.14 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: -0.01 Total: 25.43 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 5.65 Total: -17.16 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -2.37 Total: -85.13 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -2.54 Total: -53.23 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 1.85 Total: 49.95 kcal Total: -82.71 2.57 -80.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449747455.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.140 kcal (2) G-P(sol) polarization free energy of solvation -82.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds