Wall clock time and date at job start Wed Apr 1 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42906 * 114.00300 * 2 1 4 4 C 1.52995 * 109.47453 * 180.02562 * 3 2 1 5 5 C 1.52999 * 110.30913 * 59.29456 * 4 3 2 6 6 O 1.42905 * 109.47003 * 300.70626 * 5 4 3 7 7 C 1.54286 * 110.33932 * 297.12208 * 4 3 2 8 8 C 1.54396 * 104.96134 * 241.02407 * 7 4 3 9 9 N 1.48146 * 104.61467 * 23.86361 * 8 7 4 10 10 C 1.34778 * 127.83537 * 140.41447 * 9 8 7 11 11 O 1.21280 * 119.99814 * 180.02562 * 10 9 8 12 12 C 1.50701 * 120.00069 * 0.03313 * 10 9 8 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46877 * 54.99698 * 13 12 10 15 15 C 1.50704 * 109.47258 * 295.00100 * 13 12 10 16 16 H 1.07999 * 119.99874 * 325.85068 * 15 13 12 17 17 C 1.37869 * 120.00000 * 145.84959 * 15 13 12 18 18 N 1.31512 * 120.00123 * 6.11658 * 17 15 13 19 19 Si 1.86803 * 120.00154 * 186.11648 * 17 15 13 20 20 H 1.48497 * 109.47202 * 89.99750 * 19 17 15 21 21 H 1.48492 * 109.47227 * 210.00499 * 19 17 15 22 22 H 1.48506 * 109.46815 * 330.00405 * 19 17 15 23 23 C 1.50692 * 109.47110 * 174.99841 * 13 12 10 24 24 C 1.38241 * 120.00237 * 63.46253 * 23 13 12 25 25 C 1.38228 * 120.00334 * 179.78712 * 24 23 13 26 26 C 1.38233 * 120.00055 * 0.46259 * 25 24 23 27 27 C 1.38245 * 119.99966 * 359.76753 * 26 25 24 28 28 C 1.38232 * 119.99591 * 0.02562 * 27 26 25 29 29 C 1.48314 * 104.39329 * 320.47829 * 9 8 7 30 30 H 1.09001 * 109.47354 * 60.00276 * 1 2 3 31 31 H 1.08998 * 109.47558 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47310 * 300.00028 * 1 2 3 33 33 H 1.08992 * 109.47213 * 59.99634 * 3 2 1 34 34 H 1.09008 * 109.46683 * 299.99755 * 3 2 1 35 35 H 1.08993 * 109.47415 * 180.70342 * 5 4 3 36 36 H 1.08996 * 109.46957 * 60.69965 * 5 4 3 37 37 H 0.96704 * 113.99952 * 179.97438 * 6 5 4 38 38 H 1.09003 * 110.34337 * 359.89638 * 7 4 3 39 39 H 1.09005 * 110.34439 * 122.15682 * 7 4 3 40 40 H 1.08994 * 110.40737 * 142.64985 * 8 7 4 41 41 H 1.08999 * 110.40436 * 264.96992 * 8 7 4 42 42 H 1.08998 * 109.47275 * 299.99735 * 12 10 9 43 43 H 1.09002 * 109.46889 * 59.99152 * 12 10 9 44 44 H 0.97003 * 120.00141 * 179.97438 * 18 17 15 45 45 H 1.08002 * 119.99786 * 359.97438 * 24 23 13 46 46 H 1.07994 * 120.00392 * 180.24552 * 25 24 23 47 47 H 1.08001 * 120.00486 * 179.78974 * 26 25 24 48 48 H 1.07998 * 120.00158 * 180.02562 * 27 26 25 49 49 H 1.07998 * 119.99495 * 179.97438 * 28 27 26 50 50 H 1.09004 * 110.38214 * 280.72613 * 29 9 8 51 51 H 1.08996 * 110.50566 * 158.24951 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.0064 0.4126 -1.2347 6 8 3.4218 -0.8914 -1.2326 7 6 4.0185 0.4847 1.2866 8 6 4.9196 1.5222 1.9904 9 7 4.4566 2.8311 1.4736 10 6 4.3133 3.9851 2.1550 11 8 3.9195 4.9807 1.5853 12 6 4.6424 4.0383 3.6246 13 6 4.3954 5.4532 4.1517 14 1 3.3721 5.7521 3.9243 15 6 5.3560 6.4095 3.4931 16 1 6.3541 6.0836 3.2401 17 6 4.9608 7.7005 3.2136 18 7 3.7906 8.1343 3.6284 19 14 6.0874 8.8334 2.2458 20 1 5.8005 8.6959 0.7954 21 1 5.8552 10.2388 2.6654 22 1 7.5023 8.4661 2.5075 23 6 4.6060 5.4774 5.6436 24 6 5.8546 5.2032 6.1700 25 6 6.0489 5.2297 7.5383 26 6 4.9925 5.5210 8.3809 27 6 3.7428 5.7906 7.8549 28 6 3.5495 5.7682 6.4863 29 6 4.1847 2.5848 0.0366 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8901 35 1 5.0926 0.3238 -1.2151 36 1 3.7017 0.9459 -2.1351 37 1 3.6768 -1.4380 -1.9884 38 1 3.1693 0.2285 1.9202 39 1 4.5914 -0.4093 1.0397 40 1 4.7856 1.4712 3.0709 41 1 5.9649 1.3568 1.7295 42 1 4.0099 3.3336 4.1644 43 1 5.6894 3.7735 3.7723 44 1 3.5127 9.0426 3.4320 45 1 6.6789 4.9712 5.5119 46 1 7.0252 5.0194 7.9492 47 1 5.1434 5.5384 9.4501 48 1 2.9175 6.0186 8.5131 49 1 2.5731 5.9784 6.0754 50 1 5.1149 2.5877 -0.5317 51 1 3.4965 3.3335 -0.3556 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001449747458.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:37 Heat of formation + Delta-G solvation = -98.939946 kcal Electronic energy + Delta-G solvation = -31474.534989 eV Core-core repulsion = 27339.105100 eV Total energy + Delta-G solvation = -4135.429889 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.07949 -38.61088 -37.96175 -36.89585 -36.06500 -33.95676 -32.33851 -31.37790 -29.99120 -29.51828 -28.89895 -27.35874 -26.15049 -25.36651 -24.56135 -23.08666 -22.46927 -21.58457 -19.83446 -19.31847 -18.49806 -17.35324 -16.75779 -16.42275 -16.35935 -15.84379 -15.80892 -15.53855 -15.04221 -14.72458 -14.37546 -14.24636 -14.13762 -13.84842 -13.67100 -13.31306 -12.99616 -12.87620 -12.53298 -12.50771 -12.32079 -12.07928 -11.86297 -11.72507 -11.58458 -11.51323 -11.43169 -11.08241 -10.95095 -10.85418 -10.68566 -10.56104 -10.47855 -10.24252 -10.04484 -9.98230 -9.57912 -9.42808 -9.06408 -8.87830 -8.35130 -8.26433 -8.02687 -7.58957 -5.92096 -3.91585 2.30698 2.36320 3.34935 3.39251 3.44800 3.46315 3.48218 3.67573 4.11501 4.51963 4.53276 4.70784 4.77155 4.87896 5.12572 5.19206 5.24057 5.25039 5.28042 5.36237 5.40550 5.42328 5.49235 5.58416 5.61629 5.67105 5.67989 5.74563 5.75587 5.83564 5.86156 5.94314 6.09928 6.11867 6.18487 6.23696 6.30043 6.42974 6.54850 6.58850 6.83646 6.93538 7.06994 7.19302 7.32819 7.45974 7.54778 7.58483 7.87181 7.96761 8.04829 8.12000 8.39805 9.03894 9.08514 9.70468 11.18158 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010890 B = 0.003132 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.616992 B = 8936.996958 C =10151.010405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.079 3.921 4 C -0.071 4.071 5 C 0.095 3.905 6 O -0.547 6.547 7 C -0.111 4.111 8 C 0.099 3.901 9 N -0.638 5.638 10 C 0.536 3.464 11 O -0.493 6.493 12 C -0.115 4.115 13 C 0.079 3.921 14 H 0.071 0.929 15 C -0.492 4.492 16 H 0.050 0.950 17 C 0.079 3.921 18 N -0.881 5.881 19 Si 0.886 3.114 20 H -0.281 1.281 21 H -0.289 1.289 22 H -0.276 1.276 23 C -0.020 4.020 24 C -0.115 4.115 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.128 4.128 28 C -0.119 4.119 29 C 0.119 3.881 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.368 0.632 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.259 0.741 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.113 0.887 50 H 0.071 0.929 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.066 -17.802 -5.054 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.003 3.997 4 C -0.072 4.072 5 C 0.016 3.984 6 O -0.350 6.350 7 C -0.149 4.149 8 C -0.025 4.025 9 N -0.377 5.377 10 C 0.326 3.674 11 O -0.364 6.364 12 C -0.156 4.156 13 C 0.060 3.940 14 H 0.090 0.910 15 C -0.530 4.530 16 H 0.068 0.932 17 C -0.124 4.124 18 N -0.518 5.518 19 Si 0.714 3.286 20 H -0.207 1.207 21 H -0.215 1.215 22 H -0.201 1.201 23 C -0.021 4.021 24 C -0.133 4.133 25 C -0.150 4.150 26 C -0.174 4.174 27 C -0.146 4.146 28 C -0.137 4.137 29 C -0.005 4.005 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.214 0.786 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.131 0.869 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.131 0.869 50 H 0.089 0.911 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.581 -16.844 -4.724 17.565 hybrid contribution 0.729 0.885 -1.071 1.569 sum -0.852 -15.959 -5.795 17.000 Atomic orbital electron populations 1.22694 0.82245 1.02207 0.99548 1.88065 1.18168 1.26578 1.95188 1.22426 0.92103 0.85110 1.00110 1.21554 0.94370 0.95361 0.95902 1.22020 0.95748 0.84420 0.96169 1.86714 1.73271 1.25386 1.49616 1.22467 0.99849 0.97507 0.95096 1.22374 0.97721 0.82744 0.99639 1.49302 1.69025 1.10119 1.09264 1.20672 0.76942 0.80266 0.89554 1.90772 1.43241 1.32430 1.69925 1.21774 1.01471 1.01820 0.90492 1.17847 1.01118 0.88957 0.86037 0.91041 1.20679 0.98129 0.95803 1.38342 0.93165 1.24797 0.94822 0.97990 0.94791 1.69914 1.19974 1.16928 1.45033 0.86703 0.81034 0.79984 0.80852 1.20676 1.21501 1.20110 1.20714 0.91888 0.91520 0.97949 1.20943 0.97421 1.01018 0.93957 1.20968 0.97865 1.02014 0.94123 1.20794 0.93740 1.04445 0.98404 1.20983 0.96674 1.01521 0.95444 1.21083 0.99303 1.00671 0.92634 1.22025 0.99855 0.93980 0.84635 0.94654 0.89973 0.94518 0.93077 0.93718 0.93567 0.93924 0.78634 0.90555 0.90150 0.90155 0.91642 0.91710 0.90535 0.93155 0.86937 0.87676 0.87815 0.87653 0.86876 0.91094 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.36 -4.51 8.35 -57.06 -0.48 -4.99 16 3 C 0.08 0.98 4.54 37.16 0.17 1.15 16 4 C -0.07 -0.80 0.73 -153.11 -0.11 -0.91 16 5 C 0.09 0.88 5.65 37.16 0.21 1.09 16 6 O -0.55 -5.25 11.30 -57.06 -0.65 -5.89 16 7 C -0.11 -1.23 5.91 -25.33 -0.15 -1.38 16 8 C 0.10 1.18 6.92 -2.40 -0.02 1.16 16 9 N -0.64 -10.03 3.32 -169.17 -0.56 -10.59 16 10 C 0.54 10.94 7.66 -10.98 -0.08 10.86 16 11 O -0.49 -12.47 15.25 5.56 0.08 -12.38 16 12 C -0.12 -2.27 3.93 -27.88 -0.11 -2.38 16 13 C 0.08 1.91 1.67 -92.93 -0.16 1.75 16 14 H 0.07 1.98 6.98 -51.93 -0.36 1.61 16 15 C -0.49 -13.28 6.37 -34.44 -0.22 -13.50 16 16 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 17 C 0.08 2.25 5.45 -17.82 -0.10 2.15 16 18 N -0.88 -26.03 12.87 55.43 0.71 -25.32 16 19 Si 0.89 22.37 29.54 -169.99 -5.02 17.34 16 20 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 23 C -0.02 -0.45 4.77 -104.63 -0.50 -0.95 16 24 C -0.12 -2.34 8.86 -39.58 -0.35 -2.69 16 25 C -0.13 -2.37 10.05 -39.59 -0.40 -2.77 16 26 C -0.16 -2.73 10.05 -39.58 -0.40 -3.13 16 27 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 28 C -0.12 -2.53 9.67 -39.58 -0.38 -2.91 16 29 C 0.12 1.59 6.15 -2.32 -0.01 1.58 16 30 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.37 1.94 9.12 45.56 0.42 2.35 16 38 H 0.08 0.92 7.57 -51.93 -0.39 0.53 16 39 H 0.08 0.81 7.57 -51.93 -0.39 0.42 16 40 H 0.08 0.92 7.30 -51.93 -0.38 0.54 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 1.13 7.95 -51.93 -0.41 0.72 16 43 H 0.08 1.40 7.77 -51.93 -0.40 1.00 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.11 2.21 7.76 -52.49 -0.41 1.80 16 46 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 47 H 0.10 1.52 8.06 -52.49 -0.42 1.09 16 48 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 49 H 0.11 2.43 7.95 -52.49 -0.42 2.02 16 50 H 0.07 0.85 7.86 -51.93 -0.41 0.44 16 51 H 0.08 1.26 7.60 -51.93 -0.39 0.86 16 LS Contribution 412.26 15.07 6.21 6.21 Total: -1.00 -34.12 412.26 -9.34 -43.46 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.75 Total: 4.43 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -1.89 Total: -12.26 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.15 Total: -35.91 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -1.04 Total: -23.27 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.12 -9.34 -43.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449747458.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.483 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds