Wall clock time and date at job start Wed Apr 1 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00138 * 2 1 4 4 C 1.53009 * 109.47096 * 179.97438 * 3 2 1 5 5 C 1.52997 * 110.30762 * 302.17854 * 4 3 2 6 6 O 1.42898 * 109.47016 * 57.82263 * 5 4 3 7 7 C 1.54287 * 110.33909 * 64.46424 * 4 3 2 8 8 C 1.54794 * 104.91807 * 118.67661 * 7 4 3 9 9 N 1.48147 * 104.41819 * 24.16371 * 8 7 4 10 10 C 1.34776 * 127.83465 * 140.36527 * 9 8 7 11 11 O 1.21288 * 119.99793 * 179.68248 * 10 9 8 12 12 C 1.50704 * 120.00434 * 359.68180 * 10 9 8 13 13 C 1.52994 * 109.47157 * 179.97438 * 12 10 9 14 14 H 1.09008 * 109.47384 * 54.99967 * 13 12 10 15 15 C 1.50702 * 109.47254 * 294.99966 * 13 12 10 16 16 H 1.07998 * 119.99821 * 325.84948 * 15 13 12 17 17 C 1.37876 * 119.99728 * 145.84554 * 15 13 12 18 18 N 1.31514 * 120.00428 * 6.12314 * 17 15 13 19 19 Si 1.86809 * 119.99561 * 186.11835 * 17 15 13 20 20 H 1.48496 * 109.46910 * 60.00382 * 19 17 15 21 21 H 1.48501 * 109.46783 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47150 * 300.00024 * 19 17 15 23 23 C 1.50700 * 109.47268 * 174.99755 * 13 12 10 24 24 C 1.38243 * 119.99405 * 63.46787 * 23 13 12 25 25 C 1.38230 * 119.99752 * 179.74822 * 24 23 13 26 26 C 1.38242 * 119.99941 * 0.54585 * 25 24 23 27 27 C 1.38240 * 119.99739 * 359.70378 * 26 25 24 28 28 C 1.38224 * 120.00083 * 0.02562 * 27 26 25 29 29 C 1.48143 * 104.32543 * 320.10602 * 9 8 7 30 30 H 1.09006 * 109.47401 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46960 * 299.99490 * 1 2 3 32 32 H 1.08995 * 109.47288 * 59.99578 * 1 2 3 33 33 H 1.09001 * 109.47203 * 60.00244 * 3 2 1 34 34 H 1.08994 * 109.47461 * 300.00244 * 3 2 1 35 35 H 1.08994 * 109.47373 * 177.82536 * 5 4 3 36 36 H 1.09004 * 109.46504 * 297.82446 * 5 4 3 37 37 H 0.96706 * 113.99628 * 180.02562 * 6 5 4 38 38 H 1.08997 * 110.34016 * 237.74205 * 7 4 3 39 39 H 1.09003 * 110.34637 * 359.89619 * 7 4 3 40 40 H 1.09001 * 110.54527 * 265.42057 * 8 7 4 41 41 H 1.09000 * 110.46343 * 142.86323 * 8 7 4 42 42 H 1.08993 * 109.46923 * 59.99972 * 12 10 9 43 43 H 1.09000 * 109.46985 * 300.00161 * 12 10 9 44 44 H 0.97003 * 119.99913 * 179.97438 * 18 17 15 45 45 H 1.07996 * 119.99960 * 359.97438 * 24 23 13 46 46 H 1.08000 * 120.00216 * 180.27130 * 25 24 23 47 47 H 1.08000 * 119.99896 * 179.72876 * 26 25 24 48 48 H 1.08002 * 119.99528 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.00037 * 179.97438 * 28 27 26 50 50 H 1.08998 * 110.40892 * 158.62286 * 29 9 8 51 51 H 1.08994 * 110.40942 * 280.95021 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.0040 0.3811 1.2154 6 8 3.3925 -0.9104 1.1970 7 6 4.0214 0.5203 -1.3044 8 6 4.9199 1.5831 -1.9820 9 7 5.3774 2.4444 -0.8668 10 6 6.5997 2.9826 -0.6858 11 8 6.8189 3.6770 0.2842 12 6 7.6942 2.7216 -1.6884 13 6 8.9701 3.4432 -1.2501 14 1 9.2288 3.1399 -0.2355 15 6 8.7428 4.9325 -1.2866 16 1 8.0994 5.3622 -2.0402 17 6 9.3561 5.7464 -0.3580 18 7 10.2320 5.2411 0.4829 19 14 8.9429 7.5671 -0.2943 20 1 7.4937 7.7364 -0.0181 21 1 9.7318 8.2163 0.7835 22 1 9.2753 8.1961 -1.5977 23 6 10.0966 3.0839 -2.1843 24 6 10.0269 3.4372 -3.5190 25 6 11.0626 3.1122 -4.3749 26 6 12.1628 2.4240 -3.8986 27 6 12.2301 2.0662 -2.5650 28 6 11.1970 2.3961 -1.7080 29 6 4.1848 2.5853 0.0006 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 5.0878 0.2704 1.1819 36 1 3.7202 0.9045 2.1285 37 1 3.6445 -1.4755 1.9402 38 1 4.5952 -0.3791 -1.0809 39 1 3.1733 0.2784 -1.9451 40 1 4.3460 2.1664 -2.7020 41 1 5.7713 1.1078 -2.4691 42 1 7.3863 3.0908 -2.6666 43 1 7.8844 1.6500 -1.7478 44 1 10.6637 5.8139 1.1359 45 1 9.1651 3.9703 -3.8921 46 1 11.0102 3.3921 -5.4167 47 1 12.9700 2.1663 -4.5683 48 1 13.0899 1.5289 -2.1928 49 1 11.2494 2.1161 -0.6662 50 1 4.4810 2.8668 1.0111 51 1 3.4988 3.3241 -0.4134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001449747465.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:44 Heat of formation + Delta-G solvation = -98.659106 kcal Electronic energy + Delta-G solvation = -31373.938385 eV Core-core repulsion = 27238.520674 eV Total energy + Delta-G solvation = -4135.417711 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.07828 -38.62061 -37.99368 -36.91756 -35.98347 -33.95641 -32.36168 -31.38120 -29.99178 -29.48531 -28.90632 -27.33626 -26.18748 -25.46525 -24.53384 -23.09004 -22.46618 -21.58472 -19.83609 -19.30760 -18.51004 -17.32795 -16.71005 -16.36921 -16.35840 -16.10429 -15.72661 -15.57985 -14.92468 -14.70184 -14.36238 -14.21951 -14.12398 -14.03575 -13.77115 -13.32394 -13.02081 -12.57873 -12.55112 -12.52869 -12.29634 -12.08022 -11.99658 -11.80922 -11.59102 -11.55738 -11.37783 -11.14806 -10.90594 -10.83163 -10.68997 -10.57479 -10.48451 -10.24388 -10.04104 -9.87618 -9.67566 -9.43032 -9.06710 -8.88519 -8.34872 -8.26589 -8.02724 -7.59009 -5.92010 -3.91565 2.30687 2.36278 3.30410 3.39511 3.43167 3.46873 3.47696 3.74189 4.06395 4.51007 4.53281 4.74749 4.77029 4.87833 5.07615 5.14822 5.17847 5.23177 5.27253 5.35946 5.38001 5.40490 5.47388 5.51179 5.62490 5.66552 5.67920 5.74500 5.75578 5.83188 5.86156 5.94151 6.10339 6.12209 6.17484 6.23250 6.29937 6.42931 6.54800 6.58873 6.83613 6.93477 7.06863 7.11044 7.32791 7.45904 7.54759 7.67702 7.86825 7.96708 8.04793 8.11979 8.39824 9.03848 9.08257 9.70367 11.18127 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.002983 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.061893 B = 9383.935329 C =10725.572099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.079 3.921 4 C -0.070 4.070 5 C 0.095 3.905 6 O -0.549 6.549 7 C -0.111 4.111 8 C 0.099 3.901 9 N -0.638 5.638 10 C 0.536 3.464 11 O -0.493 6.493 12 C -0.116 4.116 13 C 0.080 3.920 14 H 0.072 0.928 15 C -0.493 4.493 16 H 0.050 0.950 17 C 0.079 3.921 18 N -0.881 5.881 19 Si 0.886 3.114 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.279 1.279 23 C -0.021 4.021 24 C -0.115 4.115 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.128 4.128 28 C -0.119 4.119 29 C 0.119 3.881 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.369 0.631 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.259 0.741 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.113 0.887 50 H 0.084 0.916 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.015 -11.901 -3.342 18.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.002 3.998 4 C -0.071 4.071 5 C 0.017 3.983 6 O -0.352 6.352 7 C -0.149 4.149 8 C -0.025 4.025 9 N -0.377 5.377 10 C 0.326 3.674 11 O -0.363 6.363 12 C -0.156 4.156 13 C 0.061 3.939 14 H 0.090 0.910 15 C -0.531 4.531 16 H 0.068 0.932 17 C -0.124 4.124 18 N -0.518 5.518 19 Si 0.714 3.286 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.205 1.205 23 C -0.021 4.021 24 C -0.133 4.133 25 C -0.150 4.150 26 C -0.174 4.174 27 C -0.146 4.146 28 C -0.137 4.137 29 C -0.005 4.005 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.214 0.786 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.131 0.869 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.131 0.869 50 H 0.103 0.897 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.753 -11.297 -3.159 18.076 hybrid contribution -0.144 1.271 0.535 1.387 sum -13.897 -10.026 -2.623 17.336 Atomic orbital electron populations 1.22705 0.82347 1.02341 0.99346 1.88128 1.18020 1.26311 1.95112 1.22408 0.92172 0.85402 0.99833 1.21551 0.93637 0.95636 0.96314 1.22035 0.95982 0.84394 0.95915 1.86669 1.71866 1.25720 1.50946 1.22539 0.99432 0.98031 0.94944 1.22459 0.98289 0.91702 0.90052 1.49261 1.10328 1.52843 1.25250 1.20672 0.80656 0.78481 0.87615 1.90773 1.79991 1.35249 1.30326 1.21775 0.95953 1.00276 0.97568 1.17837 0.85449 0.95362 0.95213 0.91030 1.20644 1.28156 0.90138 1.14147 0.93227 1.24799 0.94367 0.98114 0.95105 1.69902 1.26407 1.35554 1.19965 0.86762 0.78562 0.85841 0.77397 1.20300 1.21427 1.20526 1.20726 0.97149 0.90421 0.93835 1.20943 0.98556 1.00037 0.93807 1.20972 0.94913 1.00229 0.98852 1.20795 0.98470 1.02461 0.95658 1.20979 0.98451 1.01264 0.93912 1.21080 0.94293 0.99215 0.99102 1.21991 0.87515 0.93702 0.97303 0.89931 0.94637 0.94671 0.93560 0.93276 0.93400 0.94073 0.78617 0.90445 0.90321 0.91643 0.90101 0.90552 0.91690 0.93089 0.86943 0.87683 0.87817 0.87652 0.86862 0.89725 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.36 -3.98 8.29 -57.55 -0.48 -4.46 16 3 C 0.08 0.81 4.53 37.16 0.17 0.98 16 4 C -0.07 -0.80 0.73 -153.10 -0.11 -0.91 16 5 C 0.09 1.09 5.64 37.16 0.21 1.30 16 6 O -0.55 -6.05 11.26 -57.55 -0.65 -6.69 16 7 C -0.11 -1.23 5.97 -25.11 -0.15 -1.38 16 8 C 0.10 1.17 6.94 -2.19 -0.02 1.16 16 9 N -0.64 -10.00 3.31 -169.05 -0.56 -10.56 16 10 C 0.54 10.90 7.66 -10.98 -0.08 10.82 16 11 O -0.49 -12.42 15.25 5.55 0.08 -12.34 16 12 C -0.12 -2.27 3.92 -27.88 -0.11 -2.37 16 13 C 0.08 1.93 1.67 -92.93 -0.16 1.77 16 14 H 0.07 1.97 6.98 -51.92 -0.36 1.61 16 15 C -0.49 -13.31 6.37 -34.44 -0.22 -13.53 16 16 H 0.05 1.33 7.82 -52.49 -0.41 0.92 16 17 C 0.08 2.25 5.45 -17.82 -0.10 2.16 16 18 N -0.88 -25.97 12.87 55.43 0.71 -25.26 16 19 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 20 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.02 -0.46 4.77 -104.62 -0.50 -0.96 16 24 C -0.12 -2.34 8.86 -39.58 -0.35 -2.69 16 25 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 26 C -0.16 -2.72 10.05 -39.58 -0.40 -3.12 16 27 C -0.13 -2.37 10.05 -39.59 -0.40 -2.77 16 28 C -0.12 -2.52 9.67 -39.59 -0.38 -2.90 16 29 C 0.12 1.59 6.13 -2.41 -0.01 1.58 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.37 2.63 9.12 45.56 0.42 3.04 16 38 H 0.08 0.91 7.62 -51.93 -0.40 0.52 16 39 H 0.08 0.81 7.61 -51.93 -0.40 0.42 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.92 7.31 -51.93 -0.38 0.54 16 42 H 0.08 1.39 7.77 -51.93 -0.40 0.99 16 43 H 0.06 1.13 7.96 -51.93 -0.41 0.71 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.11 2.20 7.76 -52.49 -0.41 1.79 16 46 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 47 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 48 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 49 H 0.11 2.43 7.95 -52.49 -0.42 2.01 16 50 H 0.08 1.25 7.60 -51.93 -0.39 0.86 16 51 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 LS Contribution 412.30 15.07 6.21 6.21 Total: -1.00 -33.91 412.30 -9.35 -43.25 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.76 Total: 4.82 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -1.89 Total: -12.29 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.15 Total: -35.82 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -1.04 Total: -23.49 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.91 -9.35 -43.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449747465.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.407 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds