Wall clock time and date at job start Wed Apr 1 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00138 * 2 1 4 4 C 1.53009 * 109.47096 * 179.97438 * 3 2 1 5 5 C 1.52997 * 110.30762 * 302.17854 * 4 3 2 6 6 O 1.42898 * 109.47016 * 57.82263 * 5 4 3 7 7 C 1.54287 * 110.33909 * 64.46424 * 4 3 2 8 8 C 1.54794 * 104.91807 * 118.67661 * 7 4 3 9 9 N 1.48147 * 104.41819 * 24.16371 * 8 7 4 10 10 C 1.34776 * 127.83465 * 140.36527 * 9 8 7 11 11 O 1.21288 * 119.99793 * 179.68248 * 10 9 8 12 12 C 1.50704 * 120.00434 * 359.68180 * 10 9 8 13 13 C 1.52994 * 109.47157 * 179.97438 * 12 10 9 14 14 H 1.09008 * 109.47384 * 54.99967 * 13 12 10 15 15 C 1.50702 * 109.47254 * 294.99966 * 13 12 10 16 16 H 1.07998 * 119.99821 * 325.84948 * 15 13 12 17 17 C 1.37876 * 119.99728 * 145.84554 * 15 13 12 18 18 N 1.31514 * 120.00428 * 6.12314 * 17 15 13 19 19 Si 1.86809 * 119.99561 * 186.11835 * 17 15 13 20 20 H 1.48496 * 109.46910 * 60.00382 * 19 17 15 21 21 H 1.48501 * 109.46783 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47150 * 300.00024 * 19 17 15 23 23 C 1.50700 * 109.47268 * 174.99755 * 13 12 10 24 24 C 1.38243 * 119.99405 * 63.46787 * 23 13 12 25 25 C 1.38230 * 119.99752 * 179.74822 * 24 23 13 26 26 C 1.38242 * 119.99941 * 0.54585 * 25 24 23 27 27 C 1.38240 * 119.99739 * 359.70378 * 26 25 24 28 28 C 1.38224 * 120.00083 * 0.02562 * 27 26 25 29 29 C 1.48143 * 104.32543 * 320.10602 * 9 8 7 30 30 H 1.09006 * 109.47401 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46960 * 299.99490 * 1 2 3 32 32 H 1.08995 * 109.47288 * 59.99578 * 1 2 3 33 33 H 1.09001 * 109.47203 * 60.00244 * 3 2 1 34 34 H 1.08994 * 109.47461 * 300.00244 * 3 2 1 35 35 H 1.08994 * 109.47373 * 177.82536 * 5 4 3 36 36 H 1.09004 * 109.46504 * 297.82446 * 5 4 3 37 37 H 0.96706 * 113.99628 * 180.02562 * 6 5 4 38 38 H 1.08997 * 110.34016 * 237.74205 * 7 4 3 39 39 H 1.09003 * 110.34637 * 359.89619 * 7 4 3 40 40 H 1.09001 * 110.54527 * 265.42057 * 8 7 4 41 41 H 1.09000 * 110.46343 * 142.86323 * 8 7 4 42 42 H 1.08993 * 109.46923 * 59.99972 * 12 10 9 43 43 H 1.09000 * 109.46985 * 300.00161 * 12 10 9 44 44 H 0.97003 * 119.99913 * 179.97438 * 18 17 15 45 45 H 1.07996 * 119.99960 * 359.97438 * 24 23 13 46 46 H 1.08000 * 120.00216 * 180.27130 * 25 24 23 47 47 H 1.08000 * 119.99896 * 179.72876 * 26 25 24 48 48 H 1.08002 * 119.99528 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.00037 * 179.97438 * 28 27 26 50 50 H 1.08998 * 110.40892 * 158.62286 * 29 9 8 51 51 H 1.08994 * 110.40942 * 280.95021 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.0040 0.3811 1.2154 6 8 3.3925 -0.9104 1.1970 7 6 4.0214 0.5203 -1.3044 8 6 4.9199 1.5831 -1.9820 9 7 5.3774 2.4444 -0.8668 10 6 6.5997 2.9826 -0.6858 11 8 6.8189 3.6770 0.2842 12 6 7.6942 2.7216 -1.6884 13 6 8.9701 3.4432 -1.2501 14 1 9.2288 3.1399 -0.2355 15 6 8.7428 4.9325 -1.2866 16 1 8.0994 5.3622 -2.0402 17 6 9.3561 5.7464 -0.3580 18 7 10.2320 5.2411 0.4829 19 14 8.9429 7.5671 -0.2943 20 1 7.4937 7.7364 -0.0181 21 1 9.7318 8.2163 0.7835 22 1 9.2753 8.1961 -1.5977 23 6 10.0966 3.0839 -2.1843 24 6 10.0269 3.4372 -3.5190 25 6 11.0626 3.1122 -4.3749 26 6 12.1628 2.4240 -3.8986 27 6 12.2301 2.0662 -2.5650 28 6 11.1970 2.3961 -1.7080 29 6 4.1848 2.5853 0.0006 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 5.0878 0.2704 1.1819 36 1 3.7202 0.9045 2.1285 37 1 3.6445 -1.4755 1.9402 38 1 4.5952 -0.3791 -1.0809 39 1 3.1733 0.2784 -1.9451 40 1 4.3460 2.1664 -2.7020 41 1 5.7713 1.1078 -2.4691 42 1 7.3863 3.0908 -2.6666 43 1 7.8844 1.6500 -1.7478 44 1 10.6637 5.8139 1.1359 45 1 9.1651 3.9703 -3.8921 46 1 11.0102 3.3921 -5.4167 47 1 12.9700 2.1663 -4.5683 48 1 13.0899 1.5289 -2.1928 49 1 11.2494 2.1161 -0.6662 50 1 4.4810 2.8668 1.0111 51 1 3.4988 3.3241 -0.4134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001449747465.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:43 Heat of formation + Delta-G solvation = -120.118079 kcal Electronic energy + Delta-G solvation = -31374.868916 eV Core-core repulsion = 27238.520674 eV Total energy + Delta-G solvation = -4136.348242 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.25885 -40.06349 -39.33409 -37.87312 -37.00650 -35.77115 -33.66799 -33.17112 -31.49581 -30.53091 -30.38789 -28.27039 -27.63264 -26.54828 -25.79809 -24.34353 -23.87114 -23.10463 -21.42098 -20.33453 -19.89491 -18.49957 -18.21584 -18.03022 -17.28727 -17.13452 -16.91984 -16.61180 -16.44283 -16.10844 -15.91740 -15.57764 -15.43584 -15.14158 -14.95696 -14.56749 -14.44349 -14.01078 -13.98731 -13.67589 -13.52240 -13.44472 -13.30509 -13.18463 -12.97623 -12.82115 -12.78833 -12.53773 -12.50108 -12.20763 -12.04984 -11.82874 -11.77605 -11.67728 -11.37138 -11.30539 -10.96987 -10.77848 -10.64948 -10.40926 -10.35767 -9.61681 -9.53519 -9.18574 -8.04112 -6.06733 0.78617 0.84712 1.35188 1.39876 1.44152 1.92345 2.06492 2.46228 2.86239 3.18903 3.19509 3.36081 3.57730 3.77390 4.01377 4.11623 4.19571 4.25717 4.34673 4.36206 4.39445 4.41110 4.45262 4.46877 4.53044 4.54782 4.60160 4.64397 4.64847 4.68360 4.71578 4.76844 4.89338 4.92541 4.95423 4.95856 5.01112 5.11101 5.23511 5.27706 5.37534 5.48370 5.54832 5.64461 5.78411 5.84440 5.95984 6.17678 6.40321 6.41938 6.47239 6.70189 6.96592 7.00665 7.50070 7.56442 9.05507 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.002983 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.061893 B = 9383.935329 C =10725.572099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.379 6.379 3 C 0.082 3.918 4 C -0.066 4.066 5 C 0.098 3.902 6 O -0.556 6.556 7 C -0.101 4.101 8 C 0.096 3.904 9 N -0.635 5.635 10 C 0.533 3.467 11 O -0.557 6.557 12 C -0.107 4.107 13 C 0.085 3.915 14 H 0.022 0.978 15 C -0.487 4.487 16 H 0.047 0.953 17 C 0.024 3.976 18 N -0.917 5.917 19 Si 0.935 3.065 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.046 4.046 24 C -0.127 4.127 25 C -0.126 4.126 26 C -0.147 4.147 27 C -0.128 4.128 28 C -0.144 4.144 29 C 0.116 3.884 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.028 0.972 36 H 0.043 0.957 37 H 0.385 0.615 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.253 0.747 45 H 0.115 0.885 46 H 0.141 0.859 47 H 0.144 0.856 48 H 0.132 0.868 49 H 0.092 0.908 50 H 0.062 0.938 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.042 -12.821 -6.511 20.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.297 6.297 3 C 0.005 3.995 4 C -0.067 4.067 5 C 0.020 3.980 6 O -0.361 6.361 7 C -0.140 4.140 8 C -0.027 4.027 9 N -0.372 5.372 10 C 0.323 3.677 11 O -0.433 6.433 12 C -0.147 4.147 13 C 0.065 3.935 14 H 0.041 0.959 15 C -0.525 4.525 16 H 0.065 0.935 17 C -0.175 4.175 18 N -0.557 5.557 19 Si 0.762 3.238 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.046 4.046 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.165 4.165 27 C -0.146 4.146 28 C -0.162 4.162 29 C -0.008 4.008 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.232 0.768 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.133 0.867 46 H 0.159 0.841 47 H 0.162 0.838 48 H 0.149 0.851 49 H 0.111 0.889 50 H 0.081 0.919 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.834 -12.261 -6.369 20.272 hybrid contribution 0.111 1.397 1.466 2.028 sum -14.723 -10.865 -4.904 18.944 Atomic orbital electron populations 1.22852 0.80817 1.03232 1.00204 1.88082 1.19716 1.26612 1.95305 1.22364 0.90829 0.85502 1.00814 1.21459 0.94779 0.94005 0.96438 1.21927 0.94840 0.84940 0.96293 1.86622 1.71794 1.25582 1.52139 1.22469 0.99553 0.97174 0.94763 1.22755 0.99034 0.91631 0.89231 1.49141 1.09555 1.51854 1.26601 1.20733 0.82076 0.78067 0.86833 1.90744 1.81400 1.38502 1.32659 1.21618 0.94059 1.01082 0.97927 1.17600 0.88203 0.94165 0.93483 0.95947 1.20945 1.26530 0.91877 1.13117 0.93520 1.25481 0.94892 1.01583 0.95504 1.70048 1.28164 1.36352 1.21114 0.85976 0.77759 0.82255 0.77804 1.20864 1.21463 1.19094 1.20556 0.96834 0.92536 0.94706 1.21034 0.99832 1.00496 0.93180 1.21373 0.93887 0.98889 1.00202 1.21267 0.99104 1.00676 0.95469 1.21280 0.98186 1.00796 0.94328 1.21092 0.95539 1.00752 0.98851 1.22140 0.86905 0.95726 0.95992 0.89109 0.94090 0.93465 0.93180 0.91716 0.95346 0.93902 0.76762 0.91259 0.88677 0.89280 0.89309 0.88735 0.89561 0.93769 0.86664 0.84089 0.83832 0.85058 0.88934 0.91911 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.38 -7.59 8.29 -127.64 -1.06 -8.65 16 3 C 0.08 1.50 4.53 71.99 0.33 1.83 16 4 C -0.07 -1.42 0.73 -51.27 -0.04 -1.46 16 5 C 0.10 2.26 5.64 71.98 0.41 2.66 16 6 O -0.56 -11.73 11.26 -127.64 -1.44 -13.17 16 7 C -0.10 -2.04 5.97 31.64 0.19 -1.85 16 8 C 0.10 2.08 6.94 86.67 0.60 2.68 16 9 N -0.64 -19.81 3.31 -807.15 -2.67 -22.48 16 10 C 0.53 22.39 7.66 87.66 0.67 23.07 16 11 O -0.56 -29.83 15.25 -3.06 -0.05 -29.87 16 12 C -0.11 -4.26 3.92 29.85 0.12 -4.15 16 13 C 0.08 4.24 1.67 -12.29 -0.02 4.22 16 14 H 0.02 1.32 6.98 -2.38 -0.02 1.31 16 15 C -0.49 -27.14 6.37 25.60 0.16 -26.98 16 16 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 17 C 0.02 1.42 5.45 84.65 0.46 1.88 16 18 N -0.92 -57.04 12.87 21.45 0.28 -56.76 16 19 Si 0.93 47.16 29.54 68.60 2.03 49.19 16 20 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 21 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 22 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 23 C -0.05 -2.07 4.77 -19.86 -0.09 -2.16 16 24 C -0.13 -5.00 8.86 22.27 0.20 -4.80 16 25 C -0.13 -4.10 10.05 22.27 0.22 -3.87 16 26 C -0.15 -4.59 10.05 22.27 0.22 -4.37 16 27 C -0.13 -4.53 10.05 22.27 0.22 -4.30 16 28 C -0.14 -6.26 9.67 22.26 0.22 -6.05 16 29 C 0.12 3.08 6.13 86.54 0.53 3.61 16 30 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.04 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.38 5.19 9.12 -74.05 -0.68 4.51 16 38 H 0.07 1.53 7.62 -2.39 -0.02 1.51 16 39 H 0.09 1.66 7.61 -2.39 -0.02 1.64 16 40 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.09 1.81 7.31 -2.39 -0.02 1.80 16 42 H 0.09 3.39 7.77 -2.39 -0.02 3.37 16 43 H 0.09 3.01 7.96 -2.39 -0.02 2.99 16 44 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 45 H 0.12 4.36 7.76 -2.91 -0.02 4.33 16 46 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 47 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 48 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 49 H 0.09 4.27 7.95 -2.91 -0.02 4.25 16 50 H 0.06 1.95 7.60 -2.39 -0.02 1.94 16 51 H 0.09 2.04 7.87 -2.39 -0.02 2.02 16 Total: -1.00 -77.89 412.30 2.97 -74.92 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.24 Total: 25.28 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 5.65 Total: -18.44 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -2.40 Total: -79.25 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -2.54 Total: -51.69 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -77.89 2.97 -74.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449747465.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.197 kcal (2) G-P(sol) polarization free energy of solvation -77.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds