Wall clock time and date at job start Wed Apr 1 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99614 * 2 1 4 4 C 1.53000 * 109.47070 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47120 * 64.99748 * 4 3 2 6 6 C 1.42898 * 114.00170 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.49737 * 30.06491 * 6 5 4 8 8 C 1.53042 * 109.49379 * 270.00222 * 6 5 4 9 9 C 1.53049 * 109.53290 * 178.68069 * 8 6 5 10 10 C 1.53198 * 109.31202 * 61.36862 * 9 8 6 11 11 N 1.46919 * 108.77204 * 305.36182 * 10 9 8 12 12 C 1.34783 * 120.62946 * 233.60937 * 11 10 9 13 13 O 1.21279 * 119.99794 * 180.02562 * 12 11 10 14 14 C 1.50695 * 119.99898 * 359.97438 * 12 11 10 15 15 H 1.08999 * 109.46781 * 60.00253 * 14 12 11 16 16 C 1.50697 * 109.47293 * 300.00119 * 14 12 11 17 17 H 1.08002 * 119.99905 * 326.30136 * 16 14 12 18 18 C 1.37882 * 119.99763 * 146.29996 * 16 14 12 19 19 N 1.31512 * 120.00393 * 5.35281 * 18 16 14 20 20 Si 1.86800 * 119.99589 * 185.35179 * 18 16 14 21 21 H 1.48498 * 109.47464 * 60.00067 * 20 18 16 22 22 H 1.48504 * 109.46983 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47393 * 299.99958 * 20 18 16 24 24 C 1.50701 * 109.47007 * 180.02562 * 14 12 11 25 25 C 1.38232 * 120.00204 * 66.41258 * 24 14 12 26 26 C 1.38236 * 120.00081 * 179.76775 * 25 24 14 27 27 C 1.38240 * 119.99611 * 0.50557 * 26 25 24 28 28 C 1.38227 * 120.00205 * 359.74614 * 27 26 25 29 29 C 1.38239 * 120.00271 * 0.02562 * 28 27 26 30 30 C 1.46929 * 118.74384 * 53.61152 * 11 10 9 31 31 H 1.08998 * 109.47542 * 299.99717 * 1 2 3 32 32 H 1.08997 * 109.47229 * 60.00626 * 1 2 3 33 33 H 1.09003 * 109.46779 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46864 * 59.99668 * 3 2 1 35 35 H 1.08999 * 109.46806 * 299.99930 * 3 2 1 36 36 H 1.09001 * 109.46849 * 305.00449 * 4 3 2 37 37 H 1.08994 * 109.47236 * 185.00299 * 4 3 2 38 38 H 1.08993 * 109.46116 * 298.70042 * 8 6 5 39 39 H 1.09000 * 109.46184 * 58.68393 * 8 6 5 40 40 H 1.08997 * 109.49227 * 181.31643 * 9 8 6 41 41 H 1.09000 * 109.50010 * 301.41196 * 9 8 6 42 42 H 1.08998 * 109.58397 * 65.15181 * 10 9 8 43 43 H 1.09000 * 109.58143 * 185.57403 * 10 9 8 44 44 H 0.96999 * 120.00161 * 180.02562 * 19 18 16 45 45 H 1.08002 * 119.99516 * 359.97438 * 25 24 14 46 46 H 1.07993 * 119.99798 * 180.23073 * 26 25 24 47 47 H 1.08002 * 119.99686 * 179.72749 * 27 26 25 48 48 H 1.07999 * 120.00138 * 179.97438 * 28 27 26 49 49 H 1.08002 * 120.00354 * 179.97438 * 29 28 27 50 50 H 1.08995 * 109.59186 * 186.59990 * 30 11 10 51 51 H 1.09000 * 109.58607 * 66.17006 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3821 0.4189 -1.3215 7 1 5.8049 0.2809 -0.3263 8 6 5.9924 1.6649 -1.9675 9 6 7.5127 1.5078 -2.0466 10 6 7.8521 0.2953 -2.9193 11 7 7.1508 -0.8811 -2.3875 12 6 7.8279 -2.0079 -2.0902 13 8 7.2374 -2.9725 -1.6522 14 6 9.3185 -2.0696 -2.3030 15 1 9.8038 -1.3035 -1.6984 16 6 9.6283 -1.8320 -3.7585 17 1 8.9455 -2.1796 -4.5197 18 6 10.7836 -1.1709 -4.1184 19 7 11.6656 -0.8408 -3.2004 20 14 11.0958 -0.7441 -5.9100 21 1 10.0086 0.1377 -6.4056 22 1 12.3983 -0.0410 -6.0316 23 1 11.1293 -1.9901 -6.7172 24 6 9.8281 -3.4284 -1.8968 25 6 9.4555 -4.5494 -2.6147 26 6 9.9268 -5.7952 -2.2450 27 6 10.7623 -5.9213 -1.1509 28 6 11.1307 -4.8010 -0.4299 29 6 10.6632 -3.5546 -0.8025 30 6 5.6973 -0.8060 -2.1859 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6885 1.8464 0.8900 35 1 1.6885 1.8464 -0.8900 36 1 3.8507 0.5686 0.8427 37 1 3.9784 2.1767 0.0903 38 1 5.5873 1.7886 -2.9718 39 1 5.7489 2.5414 -1.3671 40 1 7.9487 2.4053 -2.4853 41 1 7.9158 1.3593 -1.0448 42 1 7.5296 0.4809 -3.9438 43 1 8.9277 0.1199 -2.8987 44 1 12.4781 -0.3754 -3.4536 45 1 8.7988 -4.4514 -3.4666 46 1 9.6386 -6.6705 -2.8081 47 1 11.1270 -6.8952 -0.8594 48 1 11.7832 -4.8995 0.4251 49 1 10.9508 -2.6793 -0.2388 50 1 5.3512 -1.7081 -1.6815 51 1 5.1991 -0.7102 -3.1507 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467442982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:30 Heat of formation + Delta-G solvation = -106.068520 kcal Electronic energy + Delta-G solvation = -31433.633495 eV Core-core repulsion = 27297.894487 eV Total energy + Delta-G solvation = -4135.739007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.77072 -38.69765 -38.01864 -37.34216 -35.80096 -33.80076 -31.94401 -31.17688 -30.87041 -29.89917 -29.21145 -27.30360 -26.44778 -25.08308 -23.61076 -22.76412 -22.46212 -21.56147 -21.07534 -20.05371 -18.25873 -17.12842 -16.87217 -16.64029 -16.08988 -15.97781 -15.64870 -15.43317 -15.10590 -14.85027 -14.56275 -14.42824 -14.02645 -13.84276 -13.67266 -13.45155 -13.04718 -12.79076 -12.66073 -12.51732 -12.33254 -12.23531 -12.08823 -11.74694 -11.64969 -11.59950 -11.36460 -11.05285 -11.02701 -10.85705 -10.71741 -10.62095 -10.50012 -10.30697 -10.22082 -9.92438 -9.89881 -9.46139 -9.42453 -8.78301 -8.55580 -7.93491 -7.89605 -7.57166 -6.29342 -4.33691 2.41630 2.44168 3.19382 3.25435 3.27705 3.35403 3.57097 3.68691 4.08920 4.26425 4.78618 4.83720 4.91424 4.98137 5.00821 5.06017 5.10614 5.11900 5.18904 5.25612 5.29456 5.42562 5.47096 5.54224 5.62268 5.75475 5.79556 5.81250 5.85321 5.95309 6.06076 6.13924 6.15298 6.17819 6.24799 6.43598 6.52876 6.56703 6.62850 6.74986 6.87383 6.92874 6.99332 7.17004 7.18112 7.38755 7.40842 7.49676 7.61712 7.75912 7.97781 8.07433 8.27033 8.67385 9.20622 9.28930 10.78105 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.003165 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.682516 B = 8845.103498 C =10566.479969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.064 3.936 4 C 0.064 3.936 5 O -0.373 6.373 6 C 0.079 3.921 7 H 0.062 0.938 8 C -0.138 4.138 9 C -0.135 4.135 10 C 0.107 3.893 11 N -0.606 5.606 12 C 0.529 3.471 13 O -0.564 6.564 14 C 0.054 3.946 15 H 0.087 0.913 16 C -0.511 4.511 17 H 0.063 0.937 18 C 0.074 3.926 19 N -0.876 5.876 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.009 4.009 25 C -0.085 4.085 26 C -0.134 4.134 27 C -0.149 4.149 28 C -0.132 4.132 29 C -0.117 4.117 30 C 0.117 3.883 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.129 0.871 44 H 0.268 0.732 45 H 0.111 0.889 46 H 0.106 0.894 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.111 0.889 50 H 0.092 0.908 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.197 6.841 5.378 14.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.013 4.013 5 O -0.291 6.291 6 C 0.021 3.979 7 H 0.080 0.920 8 C -0.176 4.176 9 C -0.174 4.174 10 C -0.016 4.016 11 N -0.340 5.340 12 C 0.321 3.679 13 O -0.443 6.443 14 C 0.033 3.967 15 H 0.105 0.895 16 C -0.549 4.549 17 H 0.081 0.919 18 C -0.131 4.131 19 N -0.512 5.512 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.010 4.010 25 C -0.103 4.103 26 C -0.153 4.153 27 C -0.167 4.167 28 C -0.150 4.150 29 C -0.135 4.135 30 C -0.006 4.006 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.146 0.854 44 H 0.078 0.922 45 H 0.129 0.871 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.129 0.871 50 H 0.111 0.889 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.334 6.199 5.494 14.857 hybrid contribution 0.238 0.749 -0.823 1.138 sum -12.096 6.948 4.671 14.711 Atomic orbital electron populations 1.22739 0.81277 1.02860 0.99673 1.88009 1.19399 1.27248 1.95316 1.22564 0.92602 0.85489 1.00615 1.22518 0.93022 0.97627 0.88145 1.87924 1.22011 1.81689 1.37486 1.22474 0.80506 0.95670 0.99299 0.92004 1.22041 0.96443 0.97376 1.01758 1.21988 0.94547 0.99429 1.01399 1.21995 1.01303 0.82878 0.95414 1.47890 1.06033 1.14611 1.65490 1.21732 0.91401 0.80704 0.74071 1.90582 1.71395 1.35838 1.46491 1.18116 0.86374 0.92749 0.99465 0.89479 1.20633 1.06942 1.37975 0.89339 0.91903 1.24932 0.95425 0.95001 0.97742 1.69914 1.09291 1.38751 1.33219 0.86604 0.77669 0.78976 0.84695 1.19749 1.21081 1.19967 1.20004 0.93823 0.95618 0.91547 1.20822 0.98618 0.91821 0.99018 1.20948 0.99361 0.97144 0.97810 1.20787 1.00906 0.97584 0.97424 1.20887 1.01035 0.93172 0.99943 1.20964 0.98823 0.96522 0.97231 1.21265 0.82486 0.97510 0.99388 0.94334 0.94098 0.89581 0.92058 0.92454 0.92436 0.91934 0.91124 0.92362 0.90744 0.91742 0.92298 0.85358 0.92221 0.87139 0.87634 0.87766 0.87622 0.87110 0.88938 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.69 10.67 -40.09 -0.43 -5.11 16 3 C 0.06 0.63 6.32 37.16 0.23 0.86 16 4 C 0.06 0.71 6.13 37.16 0.23 0.94 16 5 O -0.37 -5.36 9.96 -40.09 -0.40 -5.76 16 6 C 0.08 1.16 2.76 -26.61 -0.07 1.09 16 7 H 0.06 0.93 7.79 -51.93 -0.40 0.52 16 8 C -0.14 -1.80 5.50 -26.68 -0.15 -1.94 16 9 C -0.14 -1.91 6.08 -26.60 -0.16 -2.07 16 10 C 0.11 1.88 5.59 -3.71 -0.02 1.86 16 11 N -0.61 -11.72 2.97 -172.77 -0.51 -12.23 16 12 C 0.53 12.00 6.98 -10.99 -0.08 11.92 16 13 O -0.56 -14.09 14.84 5.56 0.08 -14.00 16 14 C 0.05 1.26 1.56 -94.08 -0.15 1.12 16 15 H 0.09 2.14 6.72 -51.93 -0.35 1.79 16 16 C -0.51 -12.39 5.50 -34.44 -0.19 -12.58 16 17 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 18 C 0.07 1.80 4.92 -17.82 -0.09 1.71 16 19 N -0.88 -22.15 12.87 55.43 0.71 -21.43 16 20 Si 0.89 19.31 29.54 -169.99 -5.02 14.29 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C -0.01 -0.21 4.29 -104.62 -0.45 -0.66 16 25 C -0.08 -1.94 8.33 -39.58 -0.33 -2.27 16 26 C -0.13 -2.71 10.05 -39.58 -0.40 -3.11 16 27 C -0.15 -2.82 10.05 -39.58 -0.40 -3.22 16 28 C -0.13 -2.59 10.05 -39.59 -0.40 -2.99 16 29 C -0.12 -2.58 9.67 -39.58 -0.38 -2.97 16 30 C 0.12 2.04 6.09 -3.71 -0.02 2.02 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 37 H 0.06 0.56 7.85 -51.93 -0.41 0.16 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.65 7.85 -51.93 -0.41 0.24 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.13 2.61 4.56 -51.93 -0.24 2.37 16 44 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 45 H 0.11 2.56 7.88 -52.49 -0.41 2.15 16 46 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 47 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 48 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 49 H 0.11 2.34 7.96 -52.49 -0.42 1.92 16 50 H 0.09 1.79 7.00 -51.93 -0.36 1.42 16 51 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 410.46 15.07 6.19 6.19 Total: -1.00 -29.22 410.46 -9.55 -38.77 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -8.46 Total: 8.21 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -1.71 Total: -8.91 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.20 Total: -33.66 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.74 Total: -24.88 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -29.22 -9.55 -38.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467442982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.298 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds