Wall clock time and date at job start Wed Apr 1 2020 05:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99614 * 2 1 4 4 C 1.53000 * 109.47070 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47120 * 64.99748 * 4 3 2 6 6 C 1.42898 * 114.00170 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.49737 * 30.06491 * 6 5 4 8 8 C 1.53042 * 109.49379 * 270.00222 * 6 5 4 9 9 C 1.53049 * 109.53290 * 178.68069 * 8 6 5 10 10 C 1.53198 * 109.31202 * 61.36862 * 9 8 6 11 11 N 1.46919 * 108.77204 * 305.36182 * 10 9 8 12 12 C 1.34783 * 120.62946 * 233.60937 * 11 10 9 13 13 O 1.21279 * 119.99794 * 180.02562 * 12 11 10 14 14 C 1.50695 * 119.99898 * 359.97438 * 12 11 10 15 15 H 1.08999 * 109.46781 * 60.00253 * 14 12 11 16 16 C 1.50697 * 109.47293 * 300.00119 * 14 12 11 17 17 H 1.08002 * 119.99905 * 326.30136 * 16 14 12 18 18 C 1.37882 * 119.99763 * 146.29996 * 16 14 12 19 19 N 1.31512 * 120.00393 * 5.35281 * 18 16 14 20 20 Si 1.86800 * 119.99589 * 185.35179 * 18 16 14 21 21 H 1.48498 * 109.47464 * 60.00067 * 20 18 16 22 22 H 1.48504 * 109.46983 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47393 * 299.99958 * 20 18 16 24 24 C 1.50701 * 109.47007 * 180.02562 * 14 12 11 25 25 C 1.38232 * 120.00204 * 66.41258 * 24 14 12 26 26 C 1.38236 * 120.00081 * 179.76775 * 25 24 14 27 27 C 1.38240 * 119.99611 * 0.50557 * 26 25 24 28 28 C 1.38227 * 120.00205 * 359.74614 * 27 26 25 29 29 C 1.38239 * 120.00271 * 0.02562 * 28 27 26 30 30 C 1.46929 * 118.74384 * 53.61152 * 11 10 9 31 31 H 1.08998 * 109.47542 * 299.99717 * 1 2 3 32 32 H 1.08997 * 109.47229 * 60.00626 * 1 2 3 33 33 H 1.09003 * 109.46779 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46864 * 59.99668 * 3 2 1 35 35 H 1.08999 * 109.46806 * 299.99930 * 3 2 1 36 36 H 1.09001 * 109.46849 * 305.00449 * 4 3 2 37 37 H 1.08994 * 109.47236 * 185.00299 * 4 3 2 38 38 H 1.08993 * 109.46116 * 298.70042 * 8 6 5 39 39 H 1.09000 * 109.46184 * 58.68393 * 8 6 5 40 40 H 1.08997 * 109.49227 * 181.31643 * 9 8 6 41 41 H 1.09000 * 109.50010 * 301.41196 * 9 8 6 42 42 H 1.08998 * 109.58397 * 65.15181 * 10 9 8 43 43 H 1.09000 * 109.58143 * 185.57403 * 10 9 8 44 44 H 0.96999 * 120.00161 * 180.02562 * 19 18 16 45 45 H 1.08002 * 119.99516 * 359.97438 * 25 24 14 46 46 H 1.07993 * 119.99798 * 180.23073 * 26 25 24 47 47 H 1.08002 * 119.99686 * 179.72749 * 27 26 25 48 48 H 1.07999 * 120.00138 * 179.97438 * 28 27 26 49 49 H 1.08002 * 120.00354 * 179.97438 * 29 28 27 50 50 H 1.08995 * 109.59186 * 186.59990 * 30 11 10 51 51 H 1.09000 * 109.58607 * 66.17006 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3821 0.4189 -1.3215 7 1 5.8049 0.2809 -0.3263 8 6 5.9924 1.6649 -1.9675 9 6 7.5127 1.5078 -2.0466 10 6 7.8521 0.2953 -2.9193 11 7 7.1508 -0.8811 -2.3875 12 6 7.8279 -2.0079 -2.0902 13 8 7.2374 -2.9725 -1.6522 14 6 9.3185 -2.0696 -2.3030 15 1 9.8038 -1.3035 -1.6984 16 6 9.6283 -1.8320 -3.7585 17 1 8.9455 -2.1796 -4.5197 18 6 10.7836 -1.1709 -4.1184 19 7 11.6656 -0.8408 -3.2004 20 14 11.0958 -0.7441 -5.9100 21 1 10.0086 0.1377 -6.4056 22 1 12.3983 -0.0410 -6.0316 23 1 11.1293 -1.9901 -6.7172 24 6 9.8281 -3.4284 -1.8968 25 6 9.4555 -4.5494 -2.6147 26 6 9.9268 -5.7952 -2.2450 27 6 10.7623 -5.9213 -1.1509 28 6 11.1307 -4.8010 -0.4299 29 6 10.6632 -3.5546 -0.8025 30 6 5.6973 -0.8060 -2.1859 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6885 1.8464 0.8900 35 1 1.6885 1.8464 -0.8900 36 1 3.8507 0.5686 0.8427 37 1 3.9784 2.1767 0.0903 38 1 5.5873 1.7886 -2.9718 39 1 5.7489 2.5414 -1.3671 40 1 7.9487 2.4053 -2.4853 41 1 7.9158 1.3593 -1.0448 42 1 7.5296 0.4809 -3.9438 43 1 8.9277 0.1199 -2.8987 44 1 12.4781 -0.3754 -3.4536 45 1 8.7988 -4.4514 -3.4666 46 1 9.6386 -6.6705 -2.8081 47 1 11.1270 -6.8952 -0.8594 48 1 11.7832 -4.8995 0.4251 49 1 10.9508 -2.6793 -0.2388 50 1 5.3512 -1.7081 -1.6815 51 1 5.1991 -0.7102 -3.1507 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467442982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:29 Heat of formation + Delta-G solvation = -121.970026 kcal Electronic energy + Delta-G solvation = -31434.323036 eV Core-core repulsion = 27297.894487 eV Total energy + Delta-G solvation = -4136.428548 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.33599 -39.99483 -39.28167 -38.52305 -37.18492 -35.60994 -33.34351 -32.87695 -32.01041 -31.53313 -30.35593 -28.95932 -27.15593 -26.66151 -25.28841 -23.91390 -23.47540 -23.20575 -22.56470 -21.49776 -19.81183 -18.72666 -18.08671 -17.76160 -17.57488 -17.45841 -16.83577 -16.62220 -16.36797 -16.17726 -15.91641 -15.79672 -15.51632 -15.33758 -15.17654 -14.79129 -14.20182 -14.16166 -14.03008 -14.00138 -13.80306 -13.67895 -13.37088 -13.29063 -13.05974 -12.84276 -12.71651 -12.56556 -12.33082 -12.19298 -12.08081 -11.96806 -11.79024 -11.77773 -11.75875 -11.52671 -11.27050 -10.65558 -10.64668 -10.54124 -10.37312 -9.55877 -9.48466 -9.25130 -8.17889 -6.27014 0.76035 0.80625 1.45198 1.47550 1.53703 1.88490 2.04930 2.44877 2.82303 2.88154 3.09237 3.26091 3.72312 3.78263 4.04481 4.08595 4.14284 4.19436 4.22132 4.26309 4.29994 4.32168 4.43036 4.44297 4.49655 4.53791 4.54659 4.57749 4.61847 4.71404 4.72136 4.82487 4.85987 4.87407 4.96349 5.00858 5.02213 5.05256 5.10269 5.26617 5.36784 5.38230 5.45094 5.67248 5.74531 5.78711 5.85051 5.95398 6.17390 6.24119 6.30383 6.40215 6.58771 6.74105 7.36250 7.45285 8.89433 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.003165 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.682516 B = 8845.103498 C =10566.479969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.062 3.938 4 C 0.055 3.945 5 O -0.389 6.389 6 C 0.089 3.911 7 H 0.056 0.944 8 C -0.128 4.128 9 C -0.127 4.127 10 C 0.104 3.896 11 N -0.600 5.600 12 C 0.523 3.477 13 O -0.596 6.596 14 C 0.062 3.938 15 H 0.069 0.931 16 C -0.511 4.511 17 H 0.047 0.953 18 C 0.043 3.957 19 N -0.899 5.899 20 Si 0.944 3.056 21 H -0.259 1.259 22 H -0.282 1.282 23 H -0.283 1.283 24 C -0.038 4.038 25 C -0.112 4.112 26 C -0.136 4.136 27 C -0.144 4.144 28 C -0.129 4.129 29 C -0.140 4.140 30 C 0.116 3.884 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.268 0.732 45 H 0.092 0.908 46 H 0.134 0.866 47 H 0.147 0.853 48 H 0.141 0.859 49 H 0.108 0.892 50 H 0.066 0.934 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.563 7.854 5.758 15.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.014 4.014 4 C -0.021 4.021 5 O -0.308 6.308 6 C 0.030 3.970 7 H 0.074 0.926 8 C -0.166 4.166 9 C -0.165 4.165 10 C -0.018 4.018 11 N -0.333 5.333 12 C 0.315 3.685 13 O -0.478 6.478 14 C 0.041 3.959 15 H 0.086 0.914 16 C -0.548 4.548 17 H 0.066 0.934 18 C -0.159 4.159 19 N -0.535 5.535 20 Si 0.769 3.231 21 H -0.184 1.184 22 H -0.207 1.207 23 H -0.209 1.209 24 C -0.039 4.039 25 C -0.131 4.131 26 C -0.154 4.154 27 C -0.162 4.162 28 C -0.147 4.147 29 C -0.159 4.159 30 C -0.007 4.007 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.119 0.881 44 H 0.078 0.922 45 H 0.110 0.890 46 H 0.152 0.848 47 H 0.165 0.835 48 H 0.158 0.842 49 H 0.126 0.874 50 H 0.085 0.915 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.725 7.257 5.869 15.781 hybrid contribution 0.294 0.368 -0.893 1.009 sum -12.431 7.625 4.977 15.409 Atomic orbital electron populations 1.22899 0.79583 1.03520 1.00987 1.87954 1.21474 1.28915 1.95622 1.22716 0.91475 0.84936 1.02285 1.22816 0.94285 0.98547 0.86449 1.87897 1.21285 1.82397 1.39225 1.22248 0.81316 0.95042 0.98361 0.92610 1.21967 0.94924 0.97293 1.02383 1.21920 0.95812 0.98341 1.00410 1.22033 0.99570 0.83591 0.96630 1.47904 1.06935 1.14208 1.64300 1.21678 0.91413 0.81246 0.74191 1.90542 1.71842 1.37145 1.48235 1.17948 0.86673 0.92555 0.98699 0.91359 1.20567 1.06821 1.38023 0.89431 0.93438 1.25432 0.95053 0.94789 1.00661 1.70000 1.09566 1.39388 1.34578 0.85819 0.77946 0.78443 0.80846 1.18363 1.20698 1.20930 1.20159 0.95079 0.95809 0.92886 1.20846 0.99764 0.93223 0.99247 1.21315 0.98865 0.96859 0.98374 1.21264 0.99491 0.99242 0.96154 1.21305 1.00507 0.92233 1.00661 1.21131 0.99485 0.97934 0.97319 1.21330 0.81058 0.98238 1.00109 0.92427 0.93293 0.89405 0.89125 0.91861 0.93309 0.89167 0.90674 0.89367 0.88298 0.92198 0.91758 0.88127 0.92220 0.88982 0.84818 0.83541 0.84169 0.87385 0.91529 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.42 -10.00 10.67 -144.34 -1.54 -11.54 16 3 C 0.06 1.10 6.32 71.98 0.45 1.56 16 4 C 0.06 1.14 6.13 71.98 0.44 1.58 16 5 O -0.39 -10.84 9.96 -144.34 -1.44 -12.28 16 6 C 0.09 2.57 2.76 30.67 0.08 2.65 16 7 H 0.06 1.67 7.79 -2.39 -0.02 1.65 16 8 C -0.13 -3.03 5.50 30.62 0.17 -2.86 16 9 C -0.13 -3.41 6.08 30.68 0.19 -3.22 16 10 C 0.10 3.70 5.59 86.37 0.48 4.19 16 11 N -0.60 -24.17 2.97 -818.91 -2.43 -26.60 16 12 C 0.52 25.12 6.98 87.65 0.61 25.73 16 13 O -0.60 -31.55 14.84 -3.03 -0.04 -31.60 16 14 C 0.06 3.08 1.56 -13.03 -0.02 3.06 16 15 H 0.07 3.57 6.72 -2.39 -0.02 3.56 16 16 C -0.51 -25.81 5.50 25.60 0.14 -25.67 16 17 H 0.05 2.49 7.82 -2.91 -0.02 2.47 16 18 C 0.04 2.15 4.92 84.66 0.42 2.57 16 19 N -0.90 -46.49 12.87 21.45 0.28 -46.22 16 20 Si 0.94 39.92 29.54 68.60 2.03 41.95 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 22 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 24 C -0.04 -1.89 4.29 -19.86 -0.09 -1.97 16 25 C -0.11 -5.33 8.33 22.27 0.19 -5.14 16 26 C -0.14 -5.39 10.05 22.27 0.22 -5.16 16 27 C -0.14 -5.11 10.05 22.27 0.22 -4.88 16 28 C -0.13 -4.88 10.05 22.27 0.22 -4.65 16 29 C -0.14 -6.32 9.67 22.27 0.22 -6.11 16 30 C 0.12 4.17 6.09 86.36 0.53 4.70 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.05 1.08 8.09 -2.39 -0.02 1.06 16 37 H 0.09 1.34 7.85 -2.39 -0.02 1.33 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.09 1.63 7.85 -2.39 -0.02 1.61 16 40 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.10 4.23 4.56 -2.39 -0.01 4.22 16 44 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 45 H 0.09 4.55 7.88 -2.91 -0.02 4.53 16 46 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 47 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 48 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 49 H 0.11 4.76 7.96 -2.91 -0.02 4.73 16 50 H 0.07 2.73 7.00 -2.39 -0.02 2.71 16 51 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -66.30 410.46 3.47 -62.83 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: 0.90 Total: 35.46 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 5.73 Total: -11.99 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -2.16 Total: -72.82 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -3.02 Total: -55.41 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -66.30 3.47 -62.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467442982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.145 kcal (2) G-P(sol) polarization free energy of solvation -66.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds