Wall clock time and date at job start Wed Apr 1 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99728 * 2 1 4 4 C 1.53009 * 109.46639 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.47319 * 64.99718 * 4 3 2 6 6 C 1.42897 * 114.00253 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.49372 * 329.93975 * 6 5 4 8 8 C 1.53044 * 109.49440 * 89.99917 * 6 5 4 9 9 C 1.53040 * 109.53424 * 181.31877 * 8 6 5 10 10 C 1.53191 * 109.31558 * 298.63503 * 9 8 6 11 11 N 1.46932 * 108.77436 * 54.63644 * 10 9 8 12 12 C 1.34772 * 120.62768 * 126.37028 * 11 10 9 13 13 O 1.21286 * 119.99611 * 179.72658 * 12 11 10 14 14 C 1.50697 * 120.00354 * 359.97438 * 12 11 10 15 15 H 1.08994 * 109.47280 * 300.00581 * 14 12 11 16 16 C 1.50706 * 109.46868 * 60.00225 * 14 12 11 17 17 H 1.07998 * 120.00211 * 25.20680 * 16 14 12 18 18 C 1.37880 * 119.99828 * 205.20272 * 16 14 12 19 19 N 1.31518 * 119.99995 * 5.60547 * 18 16 14 20 20 Si 1.86793 * 119.99971 * 185.60073 * 18 16 14 21 21 H 1.48500 * 109.47098 * 90.00108 * 20 18 16 22 22 H 1.48497 * 109.47426 * 210.00403 * 20 18 16 23 23 H 1.48500 * 109.47228 * 330.00067 * 20 18 16 24 24 C 1.50698 * 109.47246 * 180.02562 * 14 12 11 25 25 C 1.38236 * 120.00169 * 293.49376 * 24 14 12 26 26 C 1.38237 * 120.00059 * 179.78795 * 25 24 14 27 27 C 1.38235 * 119.99965 * 0.46207 * 26 25 24 28 28 C 1.38232 * 119.99876 * 359.76706 * 27 26 25 29 29 C 1.38231 * 120.00233 * 113.76435 * 24 14 12 30 30 C 1.46925 * 118.73813 * 306.64186 * 11 10 9 31 31 H 1.09000 * 109.46778 * 59.99734 * 1 2 3 32 32 H 1.08998 * 109.47130 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46924 * 300.00299 * 1 2 3 34 34 H 1.08999 * 109.47655 * 60.00115 * 3 2 1 35 35 H 1.09000 * 109.46922 * 299.99563 * 3 2 1 36 36 H 1.09004 * 109.46963 * 304.99647 * 4 3 2 37 37 H 1.09005 * 109.46801 * 184.99958 * 4 3 2 38 38 H 1.09004 * 109.45968 * 61.30061 * 8 6 5 39 39 H 1.08999 * 109.46068 * 301.33989 * 8 6 5 40 40 H 1.09000 * 109.49717 * 178.68942 * 9 8 6 41 41 H 1.08994 * 109.50171 * 58.58707 * 9 8 6 42 42 H 1.09003 * 109.58736 * 294.85223 * 10 9 8 43 43 H 1.08999 * 109.70679 * 174.49277 * 10 9 8 44 44 H 0.96995 * 119.99869 * 179.97438 * 19 18 16 45 45 H 1.08009 * 119.99819 * 359.97438 * 25 24 14 46 46 H 1.08000 * 119.99643 * 180.24824 * 26 25 24 47 47 H 1.07994 * 119.99870 * 179.79320 * 27 26 25 48 48 H 1.07997 * 119.99932 * 179.97438 * 28 27 26 49 49 H 1.08009 * 119.99668 * 359.97438 * 29 24 14 50 50 H 1.08997 * 109.58938 * 173.13921 * 30 11 10 51 51 H 1.08996 * 109.58857 * 293.57398 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5795 -1.2219 6 6 5.3812 0.4200 -1.3250 7 1 5.8782 1.2124 -0.7654 8 6 5.7850 -0.9405 -0.7521 9 6 7.3051 -1.0986 -0.8320 10 6 7.7440 -1.0421 -2.2986 11 7 7.2342 0.1991 -2.8973 12 6 8.0680 1.0512 -3.5258 13 8 7.6340 2.0701 -4.0203 14 6 9.5385 0.7353 -3.6192 15 1 9.9562 0.6500 -2.6161 16 6 9.7268 -0.5669 -4.3541 17 1 8.9765 -0.9060 -5.0529 18 6 10.8572 -1.3252 -4.1344 19 7 11.7172 -0.9697 -3.2050 20 14 11.1673 -2.8574 -5.1569 21 1 11.9474 -2.4952 -6.3674 22 1 11.9320 -3.8434 -4.3518 23 1 9.8688 -3.4518 -5.5642 24 6 10.2432 1.8396 -4.3641 25 6 9.9779 2.0479 -5.7047 26 6 10.6211 3.0637 -6.3869 27 6 11.5368 3.8650 -5.7309 28 6 11.8056 3.6537 -4.3916 29 6 11.1592 2.6407 -3.7083 30 6 5.7992 0.4965 -2.7924 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.6887 1.8464 0.8900 35 1 1.6886 1.8463 -0.8900 36 1 3.8515 0.5682 0.8410 37 1 3.9786 2.1765 0.0889 38 1 5.3067 -1.7332 -1.3274 39 1 5.4674 -1.0050 0.2886 40 1 7.5941 -2.0579 -0.4026 41 1 7.7845 -0.2920 -0.2775 42 1 7.3382 -1.9000 -2.8348 43 1 8.8323 -1.0559 -2.3574 44 1 12.5122 -1.5034 -3.0502 45 1 9.2658 1.4189 -6.2183 46 1 10.4108 3.2289 -7.4333 47 1 12.0417 4.6564 -6.2647 48 1 12.5212 4.2795 -3.8792 49 1 11.3694 2.4754 -2.6619 50 1 5.6048 1.4987 -3.1744 51 1 5.2316 -0.2333 -3.3696 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467442983.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:33 Heat of formation + Delta-G solvation = -121.899977 kcal Electronic energy + Delta-G solvation = -31375.638178 eV Core-core repulsion = 27239.212667 eV Total energy + Delta-G solvation = -4136.425511 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.34587 -39.99986 -39.28026 -38.51530 -37.18504 -35.59318 -33.35472 -32.86201 -32.01905 -31.52379 -30.36797 -28.95839 -27.13241 -26.66768 -25.30367 -23.90555 -23.47796 -23.19074 -22.56678 -21.50395 -19.79239 -18.74770 -18.07313 -17.70277 -17.63617 -17.46460 -16.84718 -16.63242 -16.32817 -16.15386 -15.93715 -15.76571 -15.52062 -15.34702 -15.17155 -14.74147 -14.33719 -14.08592 -14.04660 -13.99881 -13.79945 -13.64746 -13.33314 -13.26752 -13.10636 -12.87091 -12.75013 -12.57179 -12.23604 -12.18449 -12.05613 -12.01429 -11.88725 -11.77483 -11.72324 -11.53236 -11.25066 -10.64483 -10.63570 -10.54223 -10.36833 -9.55115 -9.49316 -9.24948 -8.18028 -6.26012 0.76944 0.81136 1.43022 1.47259 1.53973 1.87441 2.04120 2.44717 2.81685 2.87396 3.10893 3.26425 3.72259 3.78357 4.05672 4.08606 4.15731 4.17381 4.22223 4.25780 4.30470 4.33155 4.43593 4.45114 4.48819 4.53651 4.56889 4.58277 4.59973 4.70538 4.73669 4.81900 4.87190 4.88471 4.96790 5.00040 5.02445 5.05850 5.12543 5.27528 5.37349 5.38332 5.45644 5.67529 5.74277 5.79411 5.85539 5.95841 6.17084 6.24993 6.29178 6.40458 6.58184 6.75105 7.37189 7.44313 8.89753 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012174 B = 0.002953 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.340534 B = 9479.670454 C =10937.271376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.063 3.937 4 C 0.056 3.944 5 O -0.389 6.389 6 C 0.089 3.911 7 H 0.060 0.940 8 C -0.128 4.128 9 C -0.125 4.125 10 C 0.105 3.895 11 N -0.601 5.601 12 C 0.526 3.474 13 O -0.594 6.594 14 C 0.063 3.937 15 H 0.065 0.935 16 C -0.509 4.509 17 H 0.049 0.951 18 C 0.043 3.957 19 N -0.898 5.898 20 Si 0.943 3.057 21 H -0.286 1.286 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.038 4.038 25 C -0.111 4.111 26 C -0.137 4.137 27 C -0.143 4.143 28 C -0.130 4.130 29 C -0.138 4.138 30 C 0.116 3.884 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.102 0.898 44 H 0.267 0.733 45 H 0.093 0.907 46 H 0.134 0.866 47 H 0.146 0.854 48 H 0.140 0.860 49 H 0.108 0.892 50 H 0.072 0.928 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.993 2.598 8.244 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.014 4.014 4 C -0.021 4.021 5 O -0.308 6.308 6 C 0.031 3.969 7 H 0.078 0.922 8 C -0.166 4.166 9 C -0.163 4.163 10 C -0.017 4.017 11 N -0.334 5.334 12 C 0.317 3.683 13 O -0.475 6.475 14 C 0.042 3.958 15 H 0.083 0.917 16 C -0.547 4.547 17 H 0.067 0.933 18 C -0.159 4.159 19 N -0.534 5.534 20 Si 0.769 3.231 21 H -0.212 1.212 22 H -0.203 1.203 23 H -0.191 1.191 24 C -0.039 4.039 25 C -0.129 4.129 26 C -0.155 4.155 27 C -0.161 4.161 28 C -0.148 4.148 29 C -0.156 4.156 30 C -0.007 4.007 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.120 0.880 44 H 0.077 0.923 45 H 0.112 0.888 46 H 0.152 0.848 47 H 0.164 0.836 48 H 0.157 0.843 49 H 0.126 0.874 50 H 0.091 0.909 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.089 2.827 7.954 15.575 hybrid contribution 0.277 -0.674 -0.457 0.860 sum -12.812 2.154 7.496 14.999 Atomic orbital electron populations 1.22906 0.79647 1.03654 1.00827 1.87924 1.21339 1.28461 1.95596 1.22675 0.91561 0.85113 1.02019 1.22800 0.94162 0.98061 0.87054 1.87900 1.21248 1.82244 1.39424 1.22157 0.81427 0.97783 0.95575 0.92159 1.21941 0.95768 0.96861 1.02036 1.21900 0.95210 1.03496 0.95719 1.22013 1.02104 0.84740 0.92819 1.47905 1.06879 1.22456 1.56142 1.21553 0.90164 0.81184 0.75372 1.90540 1.79276 1.28342 1.49390 1.17930 0.86271 0.93434 0.98151 0.91675 1.20592 1.05952 1.03047 1.25110 0.93266 1.25402 0.95487 0.99753 0.95309 1.69978 1.12021 1.40247 1.31183 0.85775 0.78501 0.79880 0.78919 1.21232 1.20269 1.19101 1.20146 0.95523 0.93723 0.94533 1.20857 0.99551 0.97898 0.94600 1.21316 0.97804 0.96032 1.00356 1.21259 0.99303 1.00728 0.94832 1.21299 1.00218 0.98008 0.95294 1.21117 0.98306 0.96442 0.99783 1.21243 0.81230 1.02105 0.96117 0.93680 0.88975 0.92525 0.89128 0.92589 0.91885 0.90469 0.91125 0.90114 0.88502 0.92055 0.91805 0.88027 0.92337 0.88842 0.84833 0.83614 0.84251 0.87436 0.90935 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -9.04 10.67 -144.34 -1.54 -10.58 16 3 C 0.06 1.12 6.32 71.99 0.45 1.57 16 4 C 0.06 1.14 6.13 71.99 0.44 1.58 16 5 O -0.39 -10.80 9.96 -144.34 -1.44 -12.24 16 6 C 0.09 2.55 2.75 30.53 0.08 2.64 16 7 H 0.06 1.72 7.79 -2.39 -0.02 1.70 16 8 C -0.13 -3.26 5.50 30.62 0.17 -3.09 16 9 C -0.13 -3.45 6.08 30.67 0.19 -3.26 16 10 C 0.11 3.75 5.60 86.36 0.48 4.23 16 11 N -0.60 -23.74 2.98 -819.73 -2.44 -26.18 16 12 C 0.53 24.70 6.98 87.66 0.61 25.31 16 13 O -0.59 -30.56 14.84 -3.05 -0.05 -30.60 16 14 C 0.06 3.08 1.51 -13.03 -0.02 3.06 16 15 H 0.07 3.37 6.83 -2.39 -0.02 3.36 16 16 C -0.51 -25.55 5.28 25.60 0.14 -25.41 16 17 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 18 C 0.04 2.15 5.32 84.65 0.45 2.60 16 19 N -0.90 -46.53 12.92 21.45 0.28 -46.25 16 20 Si 0.94 40.59 29.54 68.60 2.03 42.62 16 21 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 C -0.04 -1.86 4.30 -19.87 -0.09 -1.94 16 25 C -0.11 -5.17 8.33 22.27 0.19 -4.98 16 26 C -0.14 -5.35 10.05 22.27 0.22 -5.13 16 27 C -0.14 -5.03 10.05 22.27 0.22 -4.81 16 28 C -0.13 -4.86 10.05 22.27 0.22 -4.64 16 29 C -0.14 -6.15 9.67 22.27 0.22 -5.93 16 30 C 0.12 4.05 6.06 86.22 0.52 4.58 16 31 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.21 7.85 -2.38 -0.02 1.19 16 37 H 0.08 1.36 8.09 -2.38 -0.02 1.34 16 38 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.08 1.76 7.85 -2.39 -0.02 1.74 16 40 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.10 4.26 4.85 -2.39 -0.01 4.25 16 44 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 45 H 0.09 4.54 7.88 -2.91 -0.02 4.52 16 46 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 47 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 48 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 49 H 0.11 4.69 7.96 -2.91 -0.02 4.67 16 50 H 0.07 2.79 7.01 -2.39 -0.02 2.78 16 51 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -64.47 410.99 3.49 -60.98 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.90 Total: 34.27 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 5.75 Total: -12.01 kcal Atomic # 7 Polarization: -70.27 SS G_CDS: -2.16 Total: -72.43 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -3.02 Total: -53.42 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -64.47 3.49 -60.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467442983.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.925 kcal (2) G-P(sol) polarization free energy of solvation -64.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds