Wall clock time and date at job start Wed Apr 1 2020 05:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99678 * 2 1 4 4 C 1.53000 * 109.47076 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.47051 * 65.00474 * 4 3 2 6 6 C 1.42902 * 113.99730 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.50172 * 29.92965 * 6 5 4 8 8 C 1.53047 * 109.49369 * 269.83400 * 6 5 4 9 9 C 1.53038 * 109.53697 * 178.68352 * 8 6 5 10 10 C 1.53197 * 109.31157 * 61.36689 * 9 8 6 11 11 N 1.46965 * 108.88792 * 305.44357 * 10 9 8 12 12 C 1.34781 * 120.65111 * 233.53655 * 11 10 9 13 13 O 1.21274 * 119.99605 * 179.81285 * 12 11 10 14 14 C 1.50702 * 120.00015 * 359.81757 * 12 11 10 15 15 H 1.09005 * 109.46615 * 300.00055 * 14 12 11 16 16 C 1.50699 * 109.47235 * 59.99744 * 14 12 11 17 17 H 1.07997 * 120.00200 * 235.36383 * 16 14 12 18 18 C 1.37872 * 120.00023 * 55.36649 * 16 14 12 19 19 N 1.31513 * 120.00073 * 2.02639 * 18 16 14 20 20 Si 1.86801 * 120.00136 * 182.02659 * 18 16 14 21 21 H 1.48503 * 109.47092 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47201 * 120.00142 * 20 18 16 23 23 H 1.48497 * 109.47108 * 240.00110 * 20 18 16 24 24 C 1.50697 * 109.47155 * 180.02562 * 14 12 11 25 25 C 1.38237 * 119.99764 * 226.96271 * 24 14 12 26 26 C 1.38236 * 119.99758 * 179.76332 * 25 24 14 27 27 C 1.38236 * 119.99858 * 0.50396 * 26 25 24 28 28 C 1.38229 * 119.99914 * 359.74526 * 27 26 25 29 29 C 1.38223 * 120.00329 * 0.02562 * 28 27 26 30 30 C 1.46923 * 118.71490 * 53.35214 * 11 10 9 31 31 H 1.09000 * 109.46882 * 299.99110 * 1 2 3 32 32 H 1.08997 * 109.47632 * 59.99631 * 1 2 3 33 33 H 1.08998 * 109.46692 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46851 * 60.00533 * 3 2 1 35 35 H 1.09002 * 109.47303 * 300.00590 * 3 2 1 36 36 H 1.09001 * 109.47142 * 304.99992 * 4 3 2 37 37 H 1.09000 * 109.47299 * 185.00739 * 4 3 2 38 38 H 1.08999 * 109.46117 * 298.70477 * 8 6 5 39 39 H 1.09003 * 109.45861 * 58.67941 * 8 6 5 40 40 H 1.08998 * 109.49667 * 181.31309 * 9 8 6 41 41 H 1.08992 * 109.50130 * 301.41708 * 9 8 6 42 42 H 1.08996 * 109.58788 * 65.15235 * 10 9 8 43 43 H 1.09001 * 109.58558 * 185.43534 * 10 9 8 44 44 H 0.97003 * 120.00626 * 179.97438 * 19 18 16 45 45 H 1.08002 * 119.99791 * 359.97438 * 25 24 14 46 46 H 1.08000 * 119.99576 * 180.22934 * 26 25 24 47 47 H 1.08003 * 119.99570 * 179.72901 * 27 26 25 48 48 H 1.08009 * 119.99710 * 179.97438 * 28 27 26 49 49 H 1.08007 * 120.00442 * 179.97438 * 29 28 27 50 50 H 1.08997 * 109.58486 * 186.78345 * 30 11 10 51 51 H 1.09006 * 109.58398 * 66.50386 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9648 0.5799 -1.2220 6 6 5.3811 0.4195 -1.3246 7 1 5.8049 0.2835 -0.3296 8 6 5.9904 1.6641 -1.9742 9 6 7.5105 1.5073 -2.0547 10 6 7.8492 0.2927 -2.9249 11 7 7.1483 -0.8842 -2.3926 12 6 7.8253 -2.0111 -2.0956 13 8 7.2355 -2.9742 -1.6537 14 6 9.3153 -2.0743 -2.3126 15 1 9.5365 -1.9040 -3.3663 16 6 9.9896 -1.0144 -1.4801 17 1 10.6408 -0.2921 -1.9496 18 6 9.7751 -0.9669 -0.1190 19 7 9.0140 -1.8705 0.4587 20 14 10.5657 0.3810 0.9046 21 1 11.3683 1.2660 0.0227 22 1 9.5076 1.1786 1.5749 23 1 11.4493 -0.2299 1.9299 24 6 9.8250 -3.4329 -1.9059 25 6 10.9488 -3.5391 -1.1080 26 6 11.4135 -4.7853 -0.7310 27 6 10.7604 -5.9254 -1.1604 28 6 9.6397 -5.8193 -1.9625 29 6 9.1723 -4.5732 -2.3357 30 6 5.6956 -0.8073 -2.1864 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3632 -1.0277 -0.0005 34 1 1.6886 1.8463 0.8900 35 1 1.6885 1.8465 -0.8899 36 1 3.8515 0.5683 0.8409 37 1 3.9785 2.1766 0.0891 38 1 5.5841 1.7853 -2.9784 39 1 5.7473 2.5421 -1.3757 40 1 7.9459 2.4038 -2.4962 41 1 7.9148 1.3612 -1.0531 42 1 7.5255 0.4756 -3.9495 43 1 8.9252 0.1191 -2.9071 44 1 8.8634 -1.8373 1.4164 45 1 11.4618 -2.6484 -0.7764 46 1 12.2894 -4.8681 -0.1045 47 1 11.1261 -6.8991 -0.8694 48 1 9.1297 -6.7102 -2.2984 49 1 8.2968 -4.4903 -2.9628 50 1 5.3503 -1.7082 -1.6794 51 1 5.1942 -0.7153 -3.1499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467442984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:38 Heat of formation + Delta-G solvation = -96.125273 kcal Electronic energy + Delta-G solvation = -32209.796074 eV Core-core repulsion = 28074.488238 eV Total energy + Delta-G solvation = -4135.307836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.55138 -38.56048 -37.87971 -37.09889 -35.52626 -33.73597 -31.72236 -30.99862 -30.66137 -29.64708 -29.07341 -27.17762 -26.35204 -24.95710 -23.57297 -22.61627 -22.31400 -21.25679 -20.78692 -19.94104 -18.11573 -17.12746 -16.84615 -16.57957 -15.89209 -15.51198 -15.46942 -15.16551 -14.93290 -14.74991 -14.64161 -14.21769 -13.91759 -13.59466 -13.47672 -13.32739 -12.88385 -12.65503 -12.52368 -12.44449 -12.20246 -12.10677 -11.86065 -11.67670 -11.62355 -11.29109 -11.23045 -11.07633 -10.78484 -10.66282 -10.57671 -10.51529 -10.40816 -10.06281 -10.02873 -9.80158 -9.67595 -9.37406 -9.25765 -8.72052 -8.28234 -7.66756 -7.60784 -7.37099 -6.15359 -4.29248 2.57121 2.64160 3.14126 3.26187 3.26224 3.54446 3.67820 4.15684 4.26134 4.34763 4.90963 5.02586 5.05544 5.09144 5.14381 5.17931 5.20832 5.23247 5.32812 5.40099 5.47367 5.54668 5.63895 5.70418 5.79940 5.88297 5.97293 5.98457 6.03323 6.08718 6.18129 6.25203 6.32472 6.36736 6.44893 6.63024 6.69391 6.72965 6.78900 6.81723 6.90317 7.03653 7.15731 7.23432 7.36884 7.57379 7.62393 7.64713 7.69521 7.78703 8.18045 8.27653 8.54127 8.75035 9.33677 9.67813 10.84906 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.003498 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.236605 B = 8003.550081 C = 9006.064163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.065 3.935 4 C 0.064 3.936 5 O -0.375 6.375 6 C 0.079 3.921 7 H 0.065 0.935 8 C -0.136 4.136 9 C -0.129 4.129 10 C 0.108 3.892 11 N -0.610 5.610 12 C 0.555 3.445 13 O -0.544 6.544 14 C 0.058 3.942 15 H 0.057 0.943 16 C -0.536 4.536 17 H 0.070 0.930 18 C 0.078 3.922 19 N -0.837 5.837 20 Si 0.878 3.122 21 H -0.268 1.268 22 H -0.284 1.284 23 H -0.282 1.282 24 C -0.015 4.015 25 C -0.065 4.065 26 C -0.148 4.148 27 C -0.145 4.145 28 C -0.144 4.144 29 C -0.100 4.100 30 C 0.125 3.875 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.121 0.879 44 H 0.264 0.736 45 H 0.128 0.872 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.101 0.899 49 H 0.107 0.893 50 H 0.090 0.910 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.840 7.266 -3.270 11.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.011 4.011 4 C -0.013 4.013 5 O -0.293 6.293 6 C 0.020 3.980 7 H 0.083 0.917 8 C -0.174 4.174 9 C -0.167 4.167 10 C -0.015 4.015 11 N -0.346 5.346 12 C 0.346 3.654 13 O -0.420 6.420 14 C 0.037 3.963 15 H 0.075 0.925 16 C -0.574 4.574 17 H 0.088 0.912 18 C -0.130 4.130 19 N -0.470 5.470 20 Si 0.705 3.295 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.016 4.016 25 C -0.083 4.083 26 C -0.166 4.166 27 C -0.163 4.163 28 C -0.162 4.162 29 C -0.118 4.118 30 C 0.001 3.999 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.139 0.861 44 H 0.074 0.926 45 H 0.145 0.855 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.125 0.875 50 H 0.108 0.892 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.261 6.417 -2.978 10.876 hybrid contribution 0.092 1.269 1.351 1.856 sum -8.169 7.686 -1.627 11.334 Atomic orbital electron populations 1.22732 0.81418 1.02799 0.99592 1.88024 1.19274 1.27277 1.95291 1.22560 0.92711 0.85418 1.00460 1.22495 0.92837 0.97609 0.88371 1.87890 1.22423 1.81732 1.37303 1.22492 0.80060 0.95592 0.99839 0.91719 1.22012 0.96660 0.97466 1.01231 1.21828 0.94244 0.98433 1.02207 1.21867 1.00993 0.84447 0.94172 1.47812 1.05678 1.14376 1.66760 1.21081 0.89901 0.80372 0.74078 1.90537 1.70567 1.36496 1.44418 1.17902 0.89004 0.92572 0.96821 0.92548 1.20630 1.30491 1.14289 0.91944 0.91208 1.24991 0.94813 0.95293 0.97952 1.70078 1.34246 1.31741 1.10915 0.86747 0.79499 0.82425 0.80849 1.19269 1.21002 1.20804 1.19810 0.93263 0.94159 0.94348 1.21128 0.96001 0.96345 0.94793 1.20982 1.00417 0.93405 1.01795 1.20769 0.97489 0.97301 1.00749 1.20819 0.97540 0.96918 1.00944 1.20979 0.98175 0.92281 1.00387 1.21123 0.82781 0.97485 0.98474 0.94387 0.94167 0.89622 0.92156 0.92551 0.92431 0.92093 0.91555 0.92690 0.91455 0.90992 0.93911 0.86134 0.92558 0.85460 0.88109 0.88258 0.88122 0.87509 0.89165 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.28 10.67 -40.08 -0.43 -5.71 16 3 C 0.07 0.75 6.32 37.16 0.23 0.99 16 4 C 0.06 0.86 6.13 37.16 0.23 1.09 16 5 O -0.38 -6.19 9.96 -40.08 -0.40 -6.59 16 6 C 0.08 1.36 2.76 -26.61 -0.07 1.29 16 7 H 0.06 1.26 7.79 -51.93 -0.40 0.86 16 8 C -0.14 -2.01 5.50 -26.69 -0.15 -2.15 16 9 C -0.13 -2.03 6.08 -26.61 -0.16 -2.19 16 10 C 0.11 1.86 5.87 -3.69 -0.02 1.84 16 11 N -0.61 -12.41 2.98 -172.74 -0.51 -12.92 16 12 C 0.55 13.13 5.40 -10.98 -0.06 13.07 16 13 O -0.54 -14.66 13.37 5.56 0.07 -14.58 16 14 C 0.06 1.33 2.00 -94.08 -0.19 1.14 16 15 H 0.06 1.19 7.95 -51.93 -0.41 0.78 16 16 C -0.54 -12.34 4.83 -34.44 -0.17 -12.51 16 17 H 0.07 1.55 7.51 -52.49 -0.39 1.15 16 18 C 0.08 1.88 4.01 -17.82 -0.07 1.81 16 19 N -0.84 -22.31 10.90 55.43 0.60 -21.71 16 20 Si 0.88 19.07 29.54 -169.99 -5.02 14.05 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 C -0.01 -0.35 4.51 -104.62 -0.47 -0.82 16 25 C -0.06 -1.49 8.20 -39.58 -0.32 -1.82 16 26 C -0.15 -3.09 10.05 -39.58 -0.40 -3.49 16 27 C -0.14 -2.89 10.05 -39.59 -0.40 -3.28 16 28 C -0.14 -2.98 10.05 -39.59 -0.40 -3.38 16 29 C -0.10 -2.28 8.21 -39.59 -0.33 -2.61 16 30 C 0.13 2.41 6.08 -3.72 -0.02 2.39 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 37 H 0.06 0.70 7.86 -51.93 -0.41 0.29 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.73 7.86 -51.93 -0.41 0.33 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.12 2.20 4.39 -51.93 -0.23 1.97 16 44 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.13 3.00 6.04 -52.49 -0.32 2.69 16 46 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 47 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 48 H 0.10 1.82 8.06 -52.48 -0.42 1.39 16 49 H 0.11 2.43 7.02 -52.48 -0.37 2.06 16 50 H 0.09 1.99 7.00 -51.93 -0.36 1.62 16 51 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 401.19 15.07 6.05 6.05 Total: -1.00 -30.02 401.19 -9.65 -39.67 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.36 Total: 8.97 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -1.65 Total: -7.22 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.09 Total: -34.63 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.75 Total: -26.88 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.02 -9.65 -39.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467442984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.458 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds