Wall clock time and date at job start Wed Apr 1 2020 05:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99678 * 2 1 4 4 C 1.53000 * 109.47076 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.47051 * 65.00474 * 4 3 2 6 6 C 1.42902 * 113.99730 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.50172 * 29.92965 * 6 5 4 8 8 C 1.53047 * 109.49369 * 269.83400 * 6 5 4 9 9 C 1.53038 * 109.53697 * 178.68352 * 8 6 5 10 10 C 1.53197 * 109.31157 * 61.36689 * 9 8 6 11 11 N 1.46965 * 108.88792 * 305.44357 * 10 9 8 12 12 C 1.34781 * 120.65111 * 233.53655 * 11 10 9 13 13 O 1.21274 * 119.99605 * 179.81285 * 12 11 10 14 14 C 1.50702 * 120.00015 * 359.81757 * 12 11 10 15 15 H 1.09005 * 109.46615 * 300.00055 * 14 12 11 16 16 C 1.50699 * 109.47235 * 59.99744 * 14 12 11 17 17 H 1.07997 * 120.00200 * 235.36383 * 16 14 12 18 18 C 1.37872 * 120.00023 * 55.36649 * 16 14 12 19 19 N 1.31513 * 120.00073 * 2.02639 * 18 16 14 20 20 Si 1.86801 * 120.00136 * 182.02659 * 18 16 14 21 21 H 1.48503 * 109.47092 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47201 * 120.00142 * 20 18 16 23 23 H 1.48497 * 109.47108 * 240.00110 * 20 18 16 24 24 C 1.50697 * 109.47155 * 180.02562 * 14 12 11 25 25 C 1.38237 * 119.99764 * 226.96271 * 24 14 12 26 26 C 1.38236 * 119.99758 * 179.76332 * 25 24 14 27 27 C 1.38236 * 119.99858 * 0.50396 * 26 25 24 28 28 C 1.38229 * 119.99914 * 359.74526 * 27 26 25 29 29 C 1.38223 * 120.00329 * 0.02562 * 28 27 26 30 30 C 1.46923 * 118.71490 * 53.35214 * 11 10 9 31 31 H 1.09000 * 109.46882 * 299.99110 * 1 2 3 32 32 H 1.08997 * 109.47632 * 59.99631 * 1 2 3 33 33 H 1.08998 * 109.46692 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46851 * 60.00533 * 3 2 1 35 35 H 1.09002 * 109.47303 * 300.00590 * 3 2 1 36 36 H 1.09001 * 109.47142 * 304.99992 * 4 3 2 37 37 H 1.09000 * 109.47299 * 185.00739 * 4 3 2 38 38 H 1.08999 * 109.46117 * 298.70477 * 8 6 5 39 39 H 1.09003 * 109.45861 * 58.67941 * 8 6 5 40 40 H 1.08998 * 109.49667 * 181.31309 * 9 8 6 41 41 H 1.08992 * 109.50130 * 301.41708 * 9 8 6 42 42 H 1.08996 * 109.58788 * 65.15235 * 10 9 8 43 43 H 1.09001 * 109.58558 * 185.43534 * 10 9 8 44 44 H 0.97003 * 120.00626 * 179.97438 * 19 18 16 45 45 H 1.08002 * 119.99791 * 359.97438 * 25 24 14 46 46 H 1.08000 * 119.99576 * 180.22934 * 26 25 24 47 47 H 1.08003 * 119.99570 * 179.72901 * 27 26 25 48 48 H 1.08009 * 119.99710 * 179.97438 * 28 27 26 49 49 H 1.08007 * 120.00442 * 179.97438 * 29 28 27 50 50 H 1.08997 * 109.58486 * 186.78345 * 30 11 10 51 51 H 1.09006 * 109.58398 * 66.50386 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9648 0.5799 -1.2220 6 6 5.3811 0.4195 -1.3246 7 1 5.8049 0.2835 -0.3296 8 6 5.9904 1.6641 -1.9742 9 6 7.5105 1.5073 -2.0547 10 6 7.8492 0.2927 -2.9249 11 7 7.1483 -0.8842 -2.3926 12 6 7.8253 -2.0111 -2.0956 13 8 7.2355 -2.9742 -1.6537 14 6 9.3153 -2.0743 -2.3126 15 1 9.5365 -1.9040 -3.3663 16 6 9.9896 -1.0144 -1.4801 17 1 10.6408 -0.2921 -1.9496 18 6 9.7751 -0.9669 -0.1190 19 7 9.0140 -1.8705 0.4587 20 14 10.5657 0.3810 0.9046 21 1 11.3683 1.2660 0.0227 22 1 9.5076 1.1786 1.5749 23 1 11.4493 -0.2299 1.9299 24 6 9.8250 -3.4329 -1.9059 25 6 10.9488 -3.5391 -1.1080 26 6 11.4135 -4.7853 -0.7310 27 6 10.7604 -5.9254 -1.1604 28 6 9.6397 -5.8193 -1.9625 29 6 9.1723 -4.5732 -2.3357 30 6 5.6956 -0.8073 -2.1864 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3632 -1.0277 -0.0005 34 1 1.6886 1.8463 0.8900 35 1 1.6885 1.8465 -0.8899 36 1 3.8515 0.5683 0.8409 37 1 3.9785 2.1766 0.0891 38 1 5.5841 1.7853 -2.9784 39 1 5.7473 2.5421 -1.3757 40 1 7.9459 2.4038 -2.4962 41 1 7.9148 1.3612 -1.0531 42 1 7.5255 0.4756 -3.9495 43 1 8.9252 0.1191 -2.9071 44 1 8.8634 -1.8373 1.4164 45 1 11.4618 -2.6484 -0.7764 46 1 12.2894 -4.8681 -0.1045 47 1 11.1261 -6.8991 -0.8694 48 1 9.1297 -6.7102 -2.2984 49 1 8.2968 -4.4903 -2.9628 50 1 5.3503 -1.7082 -1.6794 51 1 5.1942 -0.7153 -3.1499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467442984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:37 Heat of formation + Delta-G solvation = -113.147755 kcal Electronic energy + Delta-G solvation = -32210.534224 eV Core-core repulsion = 28074.488238 eV Total energy + Delta-G solvation = -4136.045986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.16583 -39.95970 -39.17401 -38.44398 -37.02126 -35.54700 -33.20279 -32.68463 -31.96227 -31.33841 -30.34655 -28.85296 -27.17831 -26.57633 -25.25001 -23.86705 -23.50097 -22.95243 -22.34817 -21.48883 -19.73810 -18.82392 -18.01648 -17.65052 -17.38017 -17.14139 -16.72385 -16.68307 -16.33666 -16.26807 -15.86705 -15.67068 -15.41413 -15.22612 -15.07004 -14.69261 -14.21819 -14.09028 -14.03572 -13.80559 -13.77430 -13.58372 -13.37107 -13.07895 -12.98363 -12.80983 -12.58719 -12.47712 -12.33571 -12.24798 -12.04718 -11.77747 -11.75353 -11.73747 -11.50653 -11.38333 -11.14239 -10.67225 -10.61542 -10.54448 -10.13576 -9.36882 -9.22961 -9.08076 -8.03580 -6.19702 0.88758 0.94320 1.38851 1.46493 1.53485 2.10606 2.38713 2.54810 2.83483 2.88261 3.23644 3.34817 3.78958 3.81922 4.06346 4.11357 4.14446 4.23745 4.29580 4.34155 4.36055 4.39054 4.48670 4.50434 4.51968 4.53926 4.57080 4.66334 4.69811 4.74565 4.78739 4.83305 4.84931 4.97422 5.02848 5.03779 5.09434 5.15503 5.18749 5.31145 5.46769 5.48491 5.55948 5.72567 5.89541 5.93825 5.97555 6.00315 6.17759 6.28536 6.43523 6.54360 6.75533 6.98929 7.45353 7.89169 8.95731 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.003498 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.236605 B = 8003.550081 C = 9006.064163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.066 3.934 4 C 0.056 3.944 5 O -0.387 6.387 6 C 0.088 3.912 7 H 0.031 0.969 8 C -0.125 4.125 9 C -0.124 4.124 10 C 0.102 3.898 11 N -0.610 5.610 12 C 0.549 3.451 13 O -0.588 6.588 14 C 0.053 3.947 15 H 0.069 0.931 16 C -0.519 4.519 17 H 0.081 0.919 18 C 0.046 3.954 19 N -0.875 5.875 20 Si 0.927 3.073 21 H -0.249 1.249 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.037 4.037 25 C -0.084 4.084 26 C -0.152 4.152 27 C -0.142 4.142 28 C -0.148 4.148 29 C -0.119 4.119 30 C 0.126 3.874 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.036 0.964 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.040 0.960 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.252 0.748 45 H 0.115 0.885 46 H 0.126 0.874 47 H 0.137 0.863 48 H 0.127 0.873 49 H 0.096 0.904 50 H 0.050 0.950 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.724 9.119 -4.105 12.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.010 4.010 4 C -0.021 4.021 5 O -0.306 6.306 6 C 0.030 3.970 7 H 0.049 0.951 8 C -0.163 4.163 9 C -0.162 4.162 10 C -0.020 4.020 11 N -0.345 5.345 12 C 0.341 3.659 13 O -0.468 6.468 14 C 0.032 3.968 15 H 0.087 0.913 16 C -0.556 4.556 17 H 0.099 0.901 18 C -0.159 4.159 19 N -0.510 5.510 20 Si 0.754 3.246 21 H -0.172 1.172 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.038 4.038 25 C -0.102 4.102 26 C -0.170 4.170 27 C -0.160 4.160 28 C -0.166 4.166 29 C -0.138 4.138 30 C 0.002 3.998 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.059 0.941 42 H 0.093 0.907 43 H 0.127 0.873 44 H 0.061 0.939 45 H 0.133 0.867 46 H 0.144 0.856 47 H 0.155 0.845 48 H 0.145 0.855 49 H 0.114 0.886 50 H 0.068 0.932 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.137 8.332 -3.846 12.265 hybrid contribution 0.009 0.649 1.570 1.699 sum -8.127 8.981 -2.276 12.324 Atomic orbital electron populations 1.22913 0.79418 1.03567 1.01093 1.87967 1.21660 1.28868 1.95633 1.22677 0.90925 0.84983 1.02429 1.22762 0.94736 0.98118 0.86437 1.87861 1.21573 1.82431 1.38738 1.22264 0.80875 0.96090 0.97811 0.95103 1.21941 0.95604 0.96434 1.02294 1.21805 0.95050 0.99050 1.00332 1.22082 1.00149 0.83719 0.96052 1.47871 1.06192 1.14533 1.65876 1.21237 0.90266 0.80722 0.73672 1.90499 1.71370 1.38326 1.46612 1.17996 0.88652 0.92712 0.97488 0.91329 1.20809 1.29360 1.13748 0.91709 0.90100 1.25470 0.95035 0.96482 0.98888 1.70261 1.36641 1.33940 1.10110 0.85958 0.78455 0.80608 0.79565 1.17215 1.21821 1.21905 1.19968 0.93889 0.94670 0.95227 1.21130 0.96367 0.97043 0.95689 1.21316 1.01162 0.92936 1.01564 1.21167 0.96640 0.98673 0.99508 1.21176 0.97858 0.97010 1.00538 1.21031 0.98216 0.93297 1.01226 1.21118 0.82311 0.96977 0.99368 0.92492 0.92956 0.89387 0.89237 0.91293 0.94552 0.89560 0.89636 0.90577 0.87817 0.94110 0.90714 0.87254 0.93883 0.86672 0.85584 0.84521 0.85492 0.88629 0.93167 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.71 16 2 O -0.42 -11.55 10.67 -144.34 -1.54 -13.09 16 3 C 0.07 1.42 6.32 71.98 0.45 1.88 16 4 C 0.06 1.48 6.13 71.98 0.44 1.93 16 5 O -0.39 -12.70 9.96 -144.34 -1.44 -14.14 16 6 C 0.09 3.07 2.76 30.67 0.08 3.16 16 7 H 0.03 1.27 7.79 -2.39 -0.02 1.25 16 8 C -0.13 -3.39 5.50 30.62 0.17 -3.22 16 9 C -0.12 -3.63 6.08 30.67 0.19 -3.45 16 10 C 0.10 3.35 5.87 86.36 0.51 3.85 16 11 N -0.61 -25.24 2.98 -818.81 -2.44 -27.68 16 12 C 0.55 27.00 5.40 87.66 0.47 27.48 16 13 O -0.59 -33.54 13.37 -3.01 -0.04 -33.58 16 14 C 0.05 2.47 2.00 -13.03 -0.03 2.44 16 15 H 0.07 2.94 7.95 -2.38 -0.02 2.92 16 16 C -0.52 -24.02 4.83 25.60 0.12 -23.89 16 17 H 0.08 3.51 7.51 -2.91 -0.02 3.48 16 18 C 0.05 2.24 4.01 84.65 0.34 2.58 16 19 N -0.87 -48.50 10.90 21.45 0.23 -48.27 16 20 Si 0.93 39.48 29.54 68.60 2.03 41.51 16 21 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 22 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 23 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 24 C -0.04 -1.77 4.51 -19.87 -0.09 -1.86 16 25 C -0.08 -3.93 8.20 22.27 0.18 -3.75 16 26 C -0.15 -6.20 10.05 22.27 0.22 -5.98 16 27 C -0.14 -5.41 10.05 22.27 0.22 -5.18 16 28 C -0.15 -6.03 10.05 22.26 0.22 -5.81 16 29 C -0.12 -5.59 8.21 22.27 0.18 -5.40 16 30 C 0.13 4.99 6.08 86.36 0.52 5.51 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.04 1.10 8.09 -2.39 -0.02 1.08 16 37 H 0.09 1.81 7.86 -2.39 -0.02 1.80 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.08 1.78 7.86 -2.39 -0.02 1.76 16 40 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.11 3.86 4.39 -2.39 -0.01 3.85 16 44 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 45 H 0.12 5.54 6.04 -2.91 -0.02 5.52 16 46 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 47 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 48 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 49 H 0.10 4.57 7.02 -2.91 -0.02 4.55 16 50 H 0.05 2.37 7.00 -2.39 -0.02 2.35 16 51 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 Total: -1.00 -68.79 401.19 3.18 -65.61 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: 0.90 Total: 37.64 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 5.47 Total: -8.01 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -2.21 Total: -75.95 kcal Atomic # 8 Polarization: -57.79 SS G_CDS: -3.02 Total: -60.80 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -68.79 3.18 -65.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467442984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.536 kcal (2) G-P(sol) polarization free energy of solvation -68.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds