Wall clock time and date at job start Wed Apr 1 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 120.00117 * 2 1 4 4 H 1.48495 * 109.47431 * 240.00334 * 3 2 1 5 5 H 1.48503 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47321 * 120.00001 * 3 2 1 7 7 C 1.38946 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00355 * 180.02562 * 7 2 1 9 9 N 1.37109 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00036 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00084 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00210 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47415 * 179.97438 * 12 10 9 14 14 C 1.48039 * 111.00127 * 190.00322 * 13 12 10 15 15 C 1.53502 * 86.04433 * 137.28803 * 14 13 12 16 16 C 1.48043 * 110.99885 * 289.44508 * 13 12 10 17 17 C 1.52681 * 113.56251 * 90.91409 * 15 14 13 18 18 C 1.53338 * 109.11016 * 73.77392 * 17 15 14 19 19 N 1.46885 * 108.76130 * 52.41017 * 18 17 15 20 20 C 1.34784 * 120.46493 * 124.48117 * 19 18 17 21 21 O 1.21280 * 119.99907 * 359.97438 * 20 19 18 22 22 C 1.50697 * 119.99984 * 179.97438 * 20 19 18 23 23 H 1.09007 * 115.56180 * 325.69738 * 22 20 19 24 24 C 1.53002 * 117.50101 * 111.38666 * 22 20 19 25 25 C 1.52993 * 60.03097 * 107.50222 * 24 22 20 26 26 C 1.52992 * 138.58906 * 229.10108 * 25 24 22 27 27 C 1.52989 * 138.58986 * 130.87830 * 25 24 22 28 28 C 1.46882 * 119.07012 * 304.74627 * 19 18 17 29 29 C 1.52677 * 113.55721 * 222.10085 * 15 14 13 30 30 H 0.97002 * 119.99645 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99723 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46524 * 59.99857 * 12 10 9 33 33 H 1.08998 * 109.46932 * 300.00256 * 12 10 9 34 34 H 1.09002 * 113.78030 * 23.00297 * 14 13 12 35 35 H 1.09004 * 113.88332 * 251.58827 * 14 13 12 36 36 H 1.09003 * 113.77885 * 108.41955 * 16 13 12 37 37 H 1.09001 * 113.78316 * 336.99067 * 16 13 12 38 38 H 1.08996 * 109.53717 * 313.88593 * 17 15 14 39 39 H 1.09004 * 109.52774 * 193.65632 * 17 15 14 40 40 H 1.09000 * 109.58914 * 292.62773 * 18 17 15 41 41 H 1.08997 * 109.59162 * 172.19233 * 18 17 15 42 42 H 1.09002 * 117.49918 * 0.02562 * 24 22 20 43 43 H 1.09002 * 117.49754 * 215.00180 * 24 22 20 44 44 H 1.08996 * 117.49738 * 336.59046 * 26 25 24 45 45 H 1.09004 * 117.50094 * 121.61400 * 26 25 24 46 46 H 1.08998 * 117.50509 * 238.38521 * 27 25 24 47 47 H 1.09005 * 117.49848 * 23.38936 * 27 25 24 48 48 H 1.08998 * 109.58822 * 175.03919 * 28 19 18 49 49 H 1.08994 * 109.59089 * 295.47704 * 28 19 18 50 50 H 1.08997 * 109.52800 * 46.11846 * 29 15 14 51 51 H 1.09003 * 109.52952 * 166.26427 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2437 -4.8630 0.0000 13 7 2.1983 -5.9796 -0.0007 14 6 1.5084 -7.2673 -0.2402 15 6 2.6786 -7.5983 -1.1769 16 6 2.8918 -6.0838 -1.3045 17 6 3.8302 -8.3216 -0.4827 18 6 3.4177 -9.7723 -0.2060 19 7 2.9363 -10.3734 -1.4568 20 6 3.4883 -11.5103 -1.9254 21 8 4.3892 -12.0440 -1.3136 22 6 2.9858 -12.1182 -3.2095 23 1 1.9184 -12.0034 -3.3982 24 6 3.9236 -12.0917 -4.4182 25 6 3.6534 -13.4094 -3.6893 26 6 4.4454 -14.5789 -3.1014 27 6 3.2582 -14.8480 -4.0283 28 6 1.8490 -9.7150 -2.1928 29 6 2.2470 -8.2673 -2.4796 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3907 0.0002 32 1 0.6167 -4.9209 -0.8897 33 1 0.6174 -4.9205 0.8903 34 1 0.5513 -7.1646 -0.7518 35 1 1.4540 -7.9091 0.6391 36 1 3.9389 -5.7830 -1.2707 37 1 2.3442 -5.6310 -2.1311 38 1 4.0597 -7.8223 0.4585 39 1 4.7093 -8.3094 -1.1270 40 1 2.6215 -9.7903 0.5382 41 1 4.2772 -10.3329 0.1617 42 1 4.9042 -11.6348 -4.2844 43 1 3.4732 -11.9591 -5.4019 44 1 5.4445 -14.7599 -3.4979 45 1 4.3145 -14.7928 -2.0406 46 1 2.3462 -15.2390 -3.5773 47 1 3.4759 -15.2060 -5.0346 48 1 1.6755 -10.2378 -3.1334 49 1 0.9400 -9.7287 -1.5916 50 1 1.3968 -7.7307 -2.9005 51 1 3.0748 -8.2521 -3.1887 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482244838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:57 Heat of formation + Delta-G solvation = 8.363766 kcal Electronic energy + Delta-G solvation = -30439.613969 eV Core-core repulsion = 26341.129869 eV Total energy + Delta-G solvation = -4098.484100 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.10563 -40.95790 -39.77667 -38.54673 -37.22554 -35.93413 -33.90051 -33.37826 -33.02218 -32.19426 -29.85090 -27.47573 -26.85333 -25.85312 -24.97031 -23.73459 -23.27375 -22.81294 -21.11021 -20.91188 -19.88403 -19.78057 -18.88544 -18.18980 -17.80886 -16.92815 -16.81750 -16.63447 -16.45310 -16.10347 -15.87269 -15.79114 -15.71182 -15.55179 -15.17705 -15.11450 -14.51220 -14.24825 -14.03015 -13.82613 -13.56630 -13.45368 -13.34966 -13.06285 -12.95853 -12.87114 -12.62915 -12.44753 -12.44116 -12.35317 -12.18099 -12.13843 -11.61684 -11.52662 -11.44290 -11.19568 -11.15215 -11.01630 -10.91152 -10.65483 -10.32121 -10.02062 -9.68063 -9.52788 -8.47499 -5.96210 1.38356 1.40344 1.45675 1.51075 1.91444 2.05093 2.28104 2.74769 2.81687 2.87098 3.19014 3.25224 3.33014 3.41488 3.54211 3.71564 3.84991 3.89842 4.04551 4.07971 4.14380 4.25853 4.30055 4.35946 4.46074 4.50302 4.55341 4.56385 4.58472 4.64663 4.67017 4.70131 4.75970 4.78593 4.81808 4.85685 4.90254 4.93567 5.01814 5.02520 5.03478 5.10583 5.27795 5.29464 5.34564 5.39251 5.48228 5.59463 5.92951 6.13468 6.41754 6.59920 7.12105 7.17225 7.55623 8.12007 8.69602 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.033908 B = 0.001736 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.557356 B =16123.305623 C =16198.466637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.335 4.335 8 H 0.076 0.924 9 N -0.574 5.574 10 C 0.439 3.561 11 O -0.620 6.620 12 C 0.025 3.975 13 N -0.482 5.482 14 C 0.017 3.983 15 C -0.071 4.071 16 C 0.024 3.976 17 C -0.097 4.097 18 C 0.119 3.881 19 N -0.603 5.603 20 C 0.534 3.466 21 O -0.584 6.584 22 C -0.143 4.143 23 H 0.154 0.846 24 C -0.089 4.089 25 C -0.227 4.227 26 C -0.135 4.135 27 C -0.104 4.104 28 C 0.109 3.891 29 C -0.116 4.116 30 H 0.278 0.722 31 H 0.396 0.604 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.135 0.865 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.105 0.895 47 H 0.117 0.883 48 H 0.112 0.888 49 H 0.089 0.911 50 H 0.097 0.903 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.936 -27.320 -10.569 29.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.199 1.199 7 C -0.465 4.465 8 H 0.094 0.906 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.507 6.507 12 C -0.107 4.107 13 N -0.205 5.205 14 C -0.111 4.111 15 C -0.072 4.072 16 C -0.105 4.105 17 C -0.135 4.135 18 C -0.003 4.003 19 N -0.335 5.335 20 C 0.324 3.676 21 O -0.464 6.464 22 C -0.164 4.164 23 H 0.171 0.829 24 C -0.126 4.126 25 C -0.228 4.228 26 C -0.172 4.172 27 C -0.141 4.141 28 C -0.013 4.013 29 C -0.155 4.155 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.153 0.847 44 H 0.115 0.885 45 H 0.099 0.901 46 H 0.124 0.876 47 H 0.135 0.865 48 H 0.131 0.869 49 H 0.108 0.892 50 H 0.115 0.885 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.459 -27.297 -9.614 28.978 hybrid contribution -0.238 1.522 -0.127 1.546 sum -1.698 -25.775 -9.741 27.606 Atomic orbital electron populations 1.69661 1.06734 1.29336 1.50246 1.26003 0.96554 1.02287 0.96271 0.85011 0.77795 0.76799 0.78858 1.19739 1.19307 1.19943 1.19602 0.92607 0.84135 1.50119 0.90589 1.41937 1.09270 1.04682 1.65264 1.20839 0.88282 0.86060 0.82167 1.90495 1.15874 1.87952 1.56330 1.22340 0.94926 0.89741 1.03683 1.68391 1.19271 1.01047 1.31762 1.24142 0.96523 0.90804 0.99633 1.21851 0.95873 0.93079 0.96353 1.23745 0.99973 0.95639 0.91098 1.21487 0.96701 0.94442 1.00904 1.21505 1.00365 0.92483 0.85977 1.48126 1.36994 1.24046 1.24353 1.20282 0.81190 0.80113 0.86005 1.90664 1.31998 1.62970 1.60795 1.22081 1.01034 0.99963 0.93285 0.82872 1.22732 0.99084 0.95345 0.95437 1.21452 1.07896 0.86581 1.06871 1.22579 0.96980 0.98766 0.98878 1.22842 0.98744 0.91471 1.01036 1.21910 0.88908 0.92329 0.98147 1.21810 1.02634 0.95640 0.95405 0.91278 0.76999 0.90322 0.87614 0.88847 0.88501 0.92617 0.91529 0.90969 0.92685 0.89863 0.90910 0.89645 0.84667 0.88459 0.90099 0.87643 0.86500 0.86947 0.89240 0.88489 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.42 13.05 21.66 0.28 -49.14 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 3 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.34 -19.19 9.68 84.04 0.81 -18.38 16 8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 9 N -0.57 -29.59 5.29 -306.98 -1.62 -31.21 16 10 C 0.44 21.06 7.59 87.66 0.67 21.73 16 11 O -0.62 -34.95 15.13 -3.08 -0.05 -34.99 16 12 C 0.02 0.83 5.31 85.56 0.45 1.29 16 13 N -0.48 -15.07 5.78 -918.33 -5.31 -20.37 16 14 C 0.02 0.34 6.76 86.25 0.58 0.92 16 15 C -0.07 -1.45 0.77 -52.04 -0.04 -1.49 16 16 C 0.02 0.73 5.88 86.24 0.51 1.24 16 17 C -0.10 -2.19 5.22 30.60 0.16 -2.03 16 18 C 0.12 2.40 6.30 86.42 0.54 2.94 16 19 N -0.60 -10.56 2.95 -819.49 -2.42 -12.98 16 20 C 0.53 11.37 7.48 87.65 0.66 12.03 16 21 O -0.58 -17.59 15.64 -3.03 -0.05 -17.64 16 22 C -0.14 -2.02 4.97 -11.52 -0.06 -2.08 16 23 H 0.15 1.21 6.78 -2.38 -0.02 1.20 16 24 C -0.09 -1.11 10.23 30.59 0.31 -0.79 16 25 C -0.23 -3.45 5.06 -52.17 -0.26 -3.71 16 26 C -0.14 -2.23 10.17 30.59 0.31 -1.91 16 27 C -0.10 -1.12 10.53 30.59 0.32 -0.79 16 28 C 0.11 1.15 6.16 86.26 0.53 1.68 16 29 C -0.12 -1.60 5.24 30.44 0.16 -1.44 16 30 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 31 H 0.40 19.26 7.90 -92.71 -0.73 18.53 16 32 H 0.08 2.24 7.69 -2.38 -0.02 2.23 16 33 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 34 H 0.09 1.44 7.72 -2.39 -0.02 1.43 16 35 H 0.10 1.77 7.40 -2.39 -0.02 1.75 16 36 H 0.06 2.04 8.04 -2.39 -0.02 2.03 16 37 H 0.07 1.94 7.73 -2.39 -0.02 1.92 16 38 H 0.07 1.89 8.01 -2.39 -0.02 1.88 16 39 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.44 7.49 -2.39 -0.02 1.43 16 41 H 0.07 1.77 6.97 -2.39 -0.02 1.76 16 42 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 46 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 48 H 0.11 0.66 5.61 -2.39 -0.01 0.65 16 49 H 0.09 0.70 8.07 -2.39 -0.02 0.68 16 50 H 0.10 1.05 8.12 -2.39 -0.02 1.03 16 51 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -76.82 407.84 -0.80 -77.62 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.21 Total: 34.50 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 6.13 Total: 9.06 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -9.06 Total: -113.70 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -0.09 Total: -52.63 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -76.82 -0.80 -77.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482244838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.980 kcal (2) G-P(sol) polarization free energy of solvation -76.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds