Wall clock time and date at job start Wed Apr 1 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99582 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38956 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 180.27617 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.47581 * 110.99818 * 73.90180 * 13 12 10 15 15 C 1.52966 * 87.80342 * 138.30682 * 14 13 12 16 16 C 1.47573 * 110.99873 * 169.99888 * 13 12 10 17 17 C 1.52564 * 114.08153 * 88.03748 * 15 14 13 18 18 C 1.53356 * 109.12906 * 190.22466 * 17 15 14 19 19 N 1.46877 * 108.74892 * 307.73624 * 18 17 15 20 20 C 1.34779 * 120.46439 * 235.59399 * 19 18 17 21 21 O 1.21279 * 120.00235 * 180.02562 * 20 19 18 22 22 C 1.50695 * 119.99977 * 0.02562 * 20 19 18 23 23 H 1.09003 * 115.55110 * 34.28407 * 22 20 19 24 24 C 1.52998 * 117.50230 * 248.60998 * 22 20 19 25 25 C 1.53000 * 117.50018 * 179.97438 * 22 20 19 26 26 C 1.52985 * 138.58755 * 336.60256 * 25 22 20 27 27 C 1.52988 * 138.59208 * 238.38279 * 25 22 20 28 28 C 1.46896 * 119.07243 * 55.62055 * 19 18 17 29 29 C 1.52570 * 114.08215 * 220.59167 * 15 14 13 30 30 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 32 32 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 33 33 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 34 34 H 1.09008 * 113.49147 * 253.03912 * 14 13 12 35 35 H 1.08998 * 113.50013 * 23.57377 * 14 13 12 36 36 H 1.09001 * 113.49596 * 336.43046 * 16 13 12 37 37 H 1.08996 * 113.49411 * 106.89747 * 16 13 12 38 38 H 1.09003 * 109.53004 * 310.12013 * 17 15 14 39 39 H 1.09002 * 109.53512 * 70.32679 * 17 15 14 40 40 H 1.09008 * 109.58897 * 187.95651 * 18 17 15 41 41 H 1.08998 * 109.58734 * 67.51923 * 18 17 15 42 42 H 1.09000 * 117.49979 * 359.97438 * 24 22 20 43 43 H 1.08996 * 117.50177 * 145.00018 * 24 22 20 44 44 H 1.09001 * 117.50447 * 336.59537 * 26 25 22 45 45 H 1.09004 * 117.49967 * 121.61109 * 26 25 22 46 46 H 1.09002 * 117.50182 * 238.38647 * 27 25 22 47 47 H 1.09006 * 117.49745 * 23.40505 * 27 25 22 48 48 H 1.09001 * 109.59041 * 184.58888 * 28 19 18 49 49 H 1.09000 * 109.71618 * 64.22192 * 28 19 18 50 50 H 1.08999 * 109.52504 * 289.66141 * 29 15 14 51 51 H 1.09002 * 109.52786 * 49.86832 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3706 0.0125 11 8 3.4472 -3.4210 0.0134 12 6 5.5607 -2.3706 0.0193 13 7 6.0503 -3.7556 0.0246 14 6 5.8724 -4.3845 -1.2986 15 6 7.2620 -5.0005 -1.1272 16 6 7.5069 -3.8025 -0.2079 17 6 7.2622 -6.3460 -0.4080 18 6 8.7066 -6.7355 -0.0709 19 7 9.5156 -6.6527 -1.2940 20 6 10.2206 -7.7193 -1.7204 21 8 10.8862 -7.6415 -2.7312 22 6 10.1819 -9.0086 -0.9411 23 1 9.2321 -9.2375 -0.4578 24 6 11.4621 -9.4380 -0.2217 25 6 11.0032 -10.1830 -1.4771 26 6 11.5899 -10.6606 -2.8068 27 6 10.7788 -11.6243 -1.9383 28 6 9.5460 -5.3910 -2.0457 29 6 8.1076 -4.9921 -2.3971 30 1 -0.4850 0.8401 -0.0004 31 1 3.8648 -0.3633 0.0059 32 1 5.9281 -1.8591 -0.8704 33 1 5.9199 -1.8544 0.9095 34 1 5.0702 -5.1221 -1.3248 35 1 5.8132 -3.6666 -2.1166 36 1 7.8921 -2.9262 -0.7292 37 1 8.0817 -4.0487 0.6849 38 1 6.6818 -6.2678 0.5114 39 1 6.8216 -7.1049 -1.0545 40 1 8.7298 -7.7549 0.3145 41 1 9.1046 -6.0504 0.6777 42 1 12.3326 -8.7882 -0.3124 43 1 11.3546 -9.9493 0.7348 44 1 11.1248 -10.2952 -3.7224 45 1 12.6681 -10.8129 -2.8554 46 1 11.3233 -12.4106 -1.4155 47 1 9.7800 -11.8929 -2.2825 48 1 10.1223 -5.5248 -2.9611 49 1 10.0032 -4.6111 -1.4367 50 1 7.6967 -5.7038 -3.1131 51 1 8.1026 -3.9925 -2.8316 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482244839.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:03 Heat of formation + Delta-G solvation = 40.765344 kcal Electronic energy + Delta-G solvation = -30457.239490 eV Core-core repulsion = 26360.160428 eV Total energy + Delta-G solvation = -4097.079062 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.29622 -40.14796 -38.32002 -37.78915 -36.34062 -33.98776 -33.23328 -32.31113 -31.65967 -31.44304 -28.76839 -26.32856 -25.53520 -24.77223 -23.65695 -23.22266 -22.72877 -21.67445 -20.39065 -19.37507 -19.13796 -18.38087 -18.12544 -17.27997 -16.22547 -16.12900 -15.79274 -15.64424 -15.35524 -15.32069 -14.90202 -14.73015 -14.59430 -14.45948 -14.07079 -13.66896 -13.35748 -13.11963 -13.03679 -12.76247 -12.62455 -12.48278 -12.21292 -12.19115 -12.02883 -11.85846 -11.79309 -11.45452 -11.40677 -11.16277 -10.80695 -10.61352 -10.58488 -10.45812 -10.45294 -10.33338 -10.27577 -9.99010 -9.88548 -9.58035 -8.88280 -8.77426 -8.37707 -8.19214 -6.32571 -3.83954 2.20773 2.62121 3.00743 3.04705 3.13293 3.33576 3.39384 3.71841 3.88387 3.98848 4.08632 4.14810 4.22199 4.39089 4.45519 4.59374 4.63830 4.82171 4.84686 4.90599 5.04330 5.05071 5.15324 5.19120 5.20967 5.27597 5.28133 5.30310 5.32061 5.36389 5.41305 5.45811 5.54083 5.55966 5.58848 5.59894 5.65552 5.66285 5.79018 5.83712 5.89758 5.95512 6.01401 6.08357 6.20450 6.34229 6.49257 7.12376 7.13772 7.56499 7.94500 8.12518 8.58421 8.93641 9.40852 9.81636 10.80577 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.032188 B = 0.001805 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.682368 B =15508.540512 C =15795.826400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.119 0.881 9 N -0.592 5.592 10 C 0.453 3.547 11 O -0.560 6.560 12 C 0.007 3.993 13 N -0.441 5.441 14 C 0.022 3.978 15 C -0.088 4.088 16 C 0.003 3.997 17 C -0.104 4.104 18 C 0.108 3.892 19 N -0.606 5.606 20 C 0.543 3.457 21 O -0.539 6.539 22 C -0.143 4.143 23 H 0.127 0.873 24 C -0.099 4.099 25 C -0.203 4.203 26 C -0.113 4.113 27 C -0.129 4.129 28 C 0.115 3.885 29 C -0.118 4.118 30 H 0.273 0.727 31 H 0.370 0.630 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.091 0.909 49 H 0.068 0.932 50 H 0.071 0.929 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.445 -15.264 -1.545 29.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.232 5.232 10 C 0.239 3.761 11 O -0.441 6.441 12 C -0.126 4.126 13 N -0.163 5.163 14 C -0.106 4.106 15 C -0.089 4.089 16 C -0.127 4.127 17 C -0.142 4.142 18 C -0.015 4.015 19 N -0.339 5.339 20 C 0.332 3.668 21 O -0.416 6.416 22 C -0.164 4.164 23 H 0.144 0.856 24 C -0.136 4.136 25 C -0.203 4.203 26 C -0.150 4.150 27 C -0.166 4.166 28 C -0.007 4.007 29 C -0.156 4.156 30 H 0.084 0.916 31 H 0.202 0.798 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.118 0.882 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.115 0.885 48 H 0.109 0.891 49 H 0.086 0.914 50 H 0.089 0.911 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 24.842 -16.058 -1.461 29.616 hybrid contribution 0.554 2.245 -0.538 2.374 sum 25.396 -13.813 -1.999 28.979 Atomic orbital electron populations 1.69622 1.05630 1.27481 1.49406 1.25038 0.95492 0.97954 0.97683 0.86673 0.79791 0.84086 0.78841 1.19675 1.20142 1.19525 1.19424 0.79229 0.96610 1.48062 0.86311 1.42221 1.07540 1.06125 1.67276 1.19584 0.87920 0.84601 0.84041 1.90562 1.69330 1.30874 1.53364 1.22520 0.96142 0.91984 1.01921 1.68826 1.05076 1.13732 1.28632 1.23711 0.96625 0.98900 0.91409 1.21616 0.96676 0.95172 0.95446 1.23921 0.92422 0.97147 0.99177 1.21574 0.95694 0.95106 1.01846 1.21862 0.90972 1.02639 0.86030 1.48026 1.47224 1.12027 1.26610 1.19680 0.78750 0.83838 0.84563 1.90676 1.41928 1.83587 1.25419 1.22017 0.98212 0.92574 1.03589 0.85561 1.22655 0.95731 1.00538 0.94719 1.21169 1.05574 0.94997 0.98572 1.22591 0.99470 1.00118 0.92820 1.22772 1.01773 0.89968 1.02110 1.21567 0.97144 0.84696 0.97315 1.21825 0.94567 1.02249 0.96995 0.91617 0.79762 0.92726 0.89083 0.89043 0.91612 0.91547 0.89869 0.88855 0.91215 0.89415 0.90902 0.88144 0.87497 0.88220 0.88570 0.88293 0.88464 0.89059 0.91390 0.91066 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.73 13.96 55.50 0.77 -24.96 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.31 27.74 -169.99 -4.72 14.60 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.40 6.51 56.52 0.37 -5.03 16 7 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 8 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 9 N -0.59 -14.07 5.09 -10.96 -0.06 -14.13 16 10 C 0.45 10.24 7.62 -10.98 -0.08 10.15 16 11 O -0.56 -14.93 15.34 5.55 0.09 -14.85 16 12 C 0.01 0.11 5.31 -4.97 -0.03 0.08 16 13 N -0.44 -6.65 5.83 -245.99 -1.43 -8.08 16 14 C 0.02 0.32 5.87 -7.29 -0.04 0.28 16 15 C -0.09 -0.92 0.83 -154.98 -0.13 -1.04 16 16 C 0.00 0.03 6.65 -7.28 -0.05 -0.02 16 17 C -0.10 -0.98 5.27 -26.77 -0.14 -1.12 16 18 C 0.11 0.81 6.24 -3.65 -0.02 0.79 16 19 N -0.61 -5.61 2.94 -172.64 -0.51 -6.12 16 20 C 0.54 5.88 7.48 -10.99 -0.08 5.79 16 21 O -0.54 -7.62 15.63 5.56 0.09 -7.54 16 22 C -0.14 -1.19 5.09 -91.78 -0.47 -1.66 16 23 H 0.13 0.84 6.59 -51.93 -0.34 0.50 16 24 C -0.10 -0.69 10.24 -26.72 -0.27 -0.96 16 25 C -0.20 -1.70 5.05 -154.51 -0.78 -2.48 16 26 C -0.11 -0.93 10.16 -26.74 -0.27 -1.21 16 27 C -0.13 -0.86 10.53 -26.74 -0.28 -1.15 16 28 C 0.12 1.05 6.34 -3.65 -0.02 1.03 16 29 C -0.12 -1.09 5.30 -26.77 -0.14 -1.23 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 32 H 0.05 0.78 7.57 -51.93 -0.39 0.38 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.09 1.50 8.10 -51.92 -0.42 1.08 16 35 H 0.07 0.93 7.66 -51.93 -0.40 0.53 16 36 H 0.07 0.65 7.69 -51.93 -0.40 0.25 16 37 H 0.08 0.81 7.52 -51.93 -0.39 0.42 16 38 H 0.09 0.99 7.95 -51.93 -0.41 0.57 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.52 5.48 -51.92 -0.28 0.24 16 41 H 0.07 0.51 7.59 -51.93 -0.39 0.11 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.95 6.98 -51.93 -0.36 0.58 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 404.98 15.07 6.10 6.10 Total: -1.00 -34.71 404.98 -10.96 -45.68 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -8.24 Total: 9.77 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -3.06 Total: -0.48 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -1.22 Total: -53.29 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: 0.17 Total: -22.38 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.72 Total: 14.60 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.71 -10.96 -45.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482244839.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.443 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds