Wall clock time and date at job start Wed Apr 1 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99582 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38956 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 180.27617 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.47581 * 110.99818 * 73.90180 * 13 12 10 15 15 C 1.52966 * 87.80342 * 138.30682 * 14 13 12 16 16 C 1.47573 * 110.99873 * 169.99888 * 13 12 10 17 17 C 1.52564 * 114.08153 * 88.03748 * 15 14 13 18 18 C 1.53356 * 109.12906 * 190.22466 * 17 15 14 19 19 N 1.46877 * 108.74892 * 307.73624 * 18 17 15 20 20 C 1.34779 * 120.46439 * 235.59399 * 19 18 17 21 21 O 1.21279 * 120.00235 * 180.02562 * 20 19 18 22 22 C 1.50695 * 119.99977 * 0.02562 * 20 19 18 23 23 H 1.09003 * 115.55110 * 34.28407 * 22 20 19 24 24 C 1.52998 * 117.50230 * 248.60998 * 22 20 19 25 25 C 1.53000 * 117.50018 * 179.97438 * 22 20 19 26 26 C 1.52985 * 138.58755 * 336.60256 * 25 22 20 27 27 C 1.52988 * 138.59208 * 238.38279 * 25 22 20 28 28 C 1.46896 * 119.07243 * 55.62055 * 19 18 17 29 29 C 1.52570 * 114.08215 * 220.59167 * 15 14 13 30 30 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 32 32 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 33 33 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 34 34 H 1.09008 * 113.49147 * 253.03912 * 14 13 12 35 35 H 1.08998 * 113.50013 * 23.57377 * 14 13 12 36 36 H 1.09001 * 113.49596 * 336.43046 * 16 13 12 37 37 H 1.08996 * 113.49411 * 106.89747 * 16 13 12 38 38 H 1.09003 * 109.53004 * 310.12013 * 17 15 14 39 39 H 1.09002 * 109.53512 * 70.32679 * 17 15 14 40 40 H 1.09008 * 109.58897 * 187.95651 * 18 17 15 41 41 H 1.08998 * 109.58734 * 67.51923 * 18 17 15 42 42 H 1.09000 * 117.49979 * 359.97438 * 24 22 20 43 43 H 1.08996 * 117.50177 * 145.00018 * 24 22 20 44 44 H 1.09001 * 117.50447 * 336.59537 * 26 25 22 45 45 H 1.09004 * 117.49967 * 121.61109 * 26 25 22 46 46 H 1.09002 * 117.50182 * 238.38647 * 27 25 22 47 47 H 1.09006 * 117.49745 * 23.40505 * 27 25 22 48 48 H 1.09001 * 109.59041 * 184.58888 * 28 19 18 49 49 H 1.09000 * 109.71618 * 64.22192 * 28 19 18 50 50 H 1.08999 * 109.52504 * 289.66141 * 29 15 14 51 51 H 1.09002 * 109.52786 * 49.86832 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3706 0.0125 11 8 3.4472 -3.4210 0.0134 12 6 5.5607 -2.3706 0.0193 13 7 6.0503 -3.7556 0.0246 14 6 5.8724 -4.3845 -1.2986 15 6 7.2620 -5.0005 -1.1272 16 6 7.5069 -3.8025 -0.2079 17 6 7.2622 -6.3460 -0.4080 18 6 8.7066 -6.7355 -0.0709 19 7 9.5156 -6.6527 -1.2940 20 6 10.2206 -7.7193 -1.7204 21 8 10.8862 -7.6415 -2.7312 22 6 10.1819 -9.0086 -0.9411 23 1 9.2321 -9.2375 -0.4578 24 6 11.4621 -9.4380 -0.2217 25 6 11.0032 -10.1830 -1.4771 26 6 11.5899 -10.6606 -2.8068 27 6 10.7788 -11.6243 -1.9383 28 6 9.5460 -5.3910 -2.0457 29 6 8.1076 -4.9921 -2.3971 30 1 -0.4850 0.8401 -0.0004 31 1 3.8648 -0.3633 0.0059 32 1 5.9281 -1.8591 -0.8704 33 1 5.9199 -1.8544 0.9095 34 1 5.0702 -5.1221 -1.3248 35 1 5.8132 -3.6666 -2.1166 36 1 7.8921 -2.9262 -0.7292 37 1 8.0817 -4.0487 0.6849 38 1 6.6818 -6.2678 0.5114 39 1 6.8216 -7.1049 -1.0545 40 1 8.7298 -7.7549 0.3145 41 1 9.1046 -6.0504 0.6777 42 1 12.3326 -8.7882 -0.3124 43 1 11.3546 -9.9493 0.7348 44 1 11.1248 -10.2952 -3.7224 45 1 12.6681 -10.8129 -2.8554 46 1 11.3233 -12.4106 -1.4155 47 1 9.7800 -11.8929 -2.2825 48 1 10.1223 -5.5248 -2.9611 49 1 10.0032 -4.6111 -1.4367 50 1 7.6967 -5.7038 -3.1131 51 1 8.1026 -3.9925 -2.8316 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482244839.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:01 Heat of formation + Delta-G solvation = 15.611286 kcal Electronic energy + Delta-G solvation = -30458.330252 eV Core-core repulsion = 26360.160428 eV Total energy + Delta-G solvation = -4098.169824 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.22779 -41.01696 -39.93042 -38.58268 -37.25521 -35.98575 -33.96741 -33.76078 -33.15377 -32.17750 -29.97773 -27.45680 -26.76621 -25.96650 -24.53606 -24.13668 -23.28655 -22.65494 -21.26584 -21.05179 -20.21883 -19.84281 -18.94952 -18.09842 -17.79916 -17.02402 -16.87359 -16.72811 -16.41090 -16.30232 -15.89626 -15.85364 -15.50129 -15.37081 -15.12232 -15.04069 -14.62883 -14.43566 -14.26325 -14.01843 -13.81092 -13.43821 -13.37707 -13.07239 -13.01240 -12.91164 -12.62666 -12.45584 -12.42992 -12.36624 -12.18612 -11.99080 -11.63497 -11.52829 -11.38743 -11.21044 -11.16150 -11.02774 -10.91411 -10.65247 -10.41664 -10.26008 -9.75096 -9.58297 -8.42589 -6.03564 1.28771 1.34168 1.43396 1.45332 1.93274 1.94751 2.21741 2.71071 2.73878 2.80794 3.13046 3.18434 3.30556 3.33940 3.57721 3.65209 3.84125 3.94166 4.00401 4.08420 4.12251 4.15059 4.26670 4.34705 4.40406 4.44636 4.50427 4.53002 4.56600 4.62916 4.66921 4.71313 4.75439 4.78582 4.81012 4.83839 4.86578 4.92378 5.01045 5.03476 5.05444 5.11446 5.26507 5.27211 5.35328 5.39078 5.52564 5.60053 5.91163 6.07893 6.39751 6.58352 6.87058 7.16839 7.38355 7.95910 8.75140 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.032188 B = 0.001805 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.682368 B =15508.540512 C =15795.826400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.966 3.034 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.231 1.231 7 C -0.329 4.329 8 H 0.053 0.947 9 N -0.592 5.592 10 C 0.450 3.550 11 O -0.610 6.610 12 C 0.019 3.981 13 N -0.469 5.469 14 C 0.013 3.987 15 C -0.072 4.072 16 C 0.014 3.986 17 C -0.102 4.102 18 C 0.113 3.887 19 N -0.604 5.604 20 C 0.537 3.463 21 O -0.581 6.581 22 C -0.151 4.151 23 H 0.145 0.855 24 C -0.081 4.081 25 C -0.229 4.229 26 C -0.131 4.131 27 C -0.111 4.111 28 C 0.116 3.884 29 C -0.110 4.110 30 H 0.279 0.721 31 H 0.389 0.611 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.134 0.866 44 H 0.079 0.921 45 H 0.102 0.898 46 H 0.118 0.882 47 H 0.099 0.901 48 H 0.076 0.924 49 H 0.088 0.912 50 H 0.056 0.944 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.154 -13.802 -0.148 32.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.786 3.214 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.154 1.154 7 C -0.458 4.458 8 H 0.071 0.929 9 N -0.234 5.234 10 C 0.238 3.762 11 O -0.494 6.494 12 C -0.113 4.113 13 N -0.191 5.191 14 C -0.116 4.116 15 C -0.073 4.073 16 C -0.114 4.114 17 C -0.141 4.141 18 C -0.009 4.009 19 N -0.335 5.335 20 C 0.326 3.674 21 O -0.462 6.462 22 C -0.171 4.171 23 H 0.162 0.838 24 C -0.118 4.118 25 C -0.229 4.229 26 C -0.168 4.168 27 C -0.147 4.147 28 C -0.006 4.006 29 C -0.148 4.148 30 H 0.088 0.912 31 H 0.225 0.775 32 H 0.105 0.895 33 H 0.138 0.862 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.125 0.875 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.152 0.848 44 H 0.097 0.903 45 H 0.120 0.880 46 H 0.136 0.864 47 H 0.118 0.882 48 H 0.094 0.906 49 H 0.107 0.893 50 H 0.075 0.925 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 28.570 -14.600 -0.044 32.084 hybrid contribution -0.703 1.651 -1.013 2.061 sum 27.866 -12.949 -1.058 30.746 Atomic orbital electron populations 1.69809 1.08164 1.29245 1.50324 1.26131 0.96481 1.02748 0.96068 0.85354 0.79512 0.76660 0.79919 1.18169 1.19995 1.15391 1.18988 0.81542 0.94854 1.50400 0.92866 1.42052 1.05794 1.07596 1.68006 1.20911 0.90850 0.83316 0.81123 1.90545 1.71349 1.32766 1.54736 1.22480 0.90474 0.93653 1.04692 1.68819 1.08223 1.13052 1.29052 1.23717 0.97825 0.98659 0.91391 1.21519 0.94011 0.95711 0.96049 1.23986 0.89658 0.97631 1.00093 1.21536 0.97036 0.94481 1.01016 1.21956 0.89073 1.04381 0.85481 1.48124 1.46739 1.11759 1.26912 1.20165 0.78211 0.84801 0.84194 1.90657 1.43869 1.84345 1.27288 1.22079 0.99692 0.91319 1.04018 0.83793 1.22749 0.94458 0.99504 0.95126 1.21452 1.06345 0.96013 0.99108 1.22569 0.99968 1.01805 0.92425 1.22836 1.01687 0.89543 1.00658 1.21573 0.96582 0.85198 0.97235 1.21758 0.94374 1.02660 0.96041 0.91152 0.77521 0.89549 0.86242 0.92805 0.91680 0.89335 0.87914 0.89899 0.92197 0.87478 0.89103 0.88795 0.84806 0.90283 0.88003 0.86365 0.88224 0.90580 0.89341 0.92527 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 13.96 21.66 0.30 -56.27 16 2 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 3 Si 0.97 38.63 27.74 68.60 1.90 40.54 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.23 -7.72 6.51 99.48 0.65 -7.07 16 7 C -0.33 -19.36 10.16 84.04 0.85 -18.51 16 8 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 9 N -0.59 -27.97 5.09 -306.97 -1.56 -29.53 16 10 C 0.45 20.35 7.62 87.66 0.67 21.02 16 11 O -0.61 -34.06 15.34 -3.07 -0.05 -34.11 16 12 C 0.02 0.56 5.31 85.56 0.45 1.01 16 13 N -0.47 -13.26 5.83 -932.19 -5.43 -18.69 16 14 C 0.01 0.37 5.87 83.69 0.49 0.87 16 15 C -0.07 -1.37 0.83 -52.49 -0.04 -1.41 16 16 C 0.01 0.25 6.65 83.69 0.56 0.81 16 17 C -0.10 -1.79 5.27 30.57 0.16 -1.63 16 18 C 0.11 1.39 6.24 86.43 0.54 1.93 16 19 N -0.60 -10.03 2.94 -818.49 -2.41 -12.44 16 20 C 0.54 11.09 7.48 87.66 0.66 11.74 16 21 O -0.58 -16.60 15.63 -3.03 -0.05 -16.65 16 22 C -0.15 -2.23 5.09 -11.54 -0.06 -2.29 16 23 H 0.14 1.55 6.59 -2.39 -0.02 1.54 16 24 C -0.08 -0.93 10.24 30.60 0.31 -0.62 16 25 C -0.23 -3.54 5.05 -52.18 -0.26 -3.81 16 26 C -0.13 -2.16 10.16 30.59 0.31 -1.85 16 27 C -0.11 -1.31 10.53 30.59 0.32 -0.99 16 28 C 0.12 1.88 6.34 86.42 0.55 2.43 16 29 C -0.11 -1.84 5.30 30.57 0.16 -1.68 16 30 H 0.28 15.41 8.31 -92.70 -0.77 14.64 16 31 H 0.39 15.11 5.76 -92.71 -0.53 14.57 16 32 H 0.09 2.07 7.57 -2.38 -0.02 2.05 16 33 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.05 1.89 8.10 -2.38 -0.02 1.87 16 35 H 0.06 1.80 7.66 -2.39 -0.02 1.78 16 36 H 0.09 1.24 7.69 -2.39 -0.02 1.22 16 37 H 0.10 1.48 7.52 -2.39 -0.02 1.46 16 38 H 0.08 1.67 7.95 -2.39 -0.02 1.65 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.11 0.94 5.48 -2.38 -0.01 0.92 16 41 H 0.09 0.87 7.59 -2.39 -0.02 0.85 16 42 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 46 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 48 H 0.08 1.52 6.98 -2.39 -0.02 1.50 16 49 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.09 1.29 8.10 -2.39 -0.02 1.27 16 Total: -1.00 -83.74 404.98 -0.81 -84.55 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: 0.35 Total: 36.00 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 6.14 Total: 6.60 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -9.10 Total: -116.93 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.09 Total: -50.76 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 1.90 Total: 40.54 kcal Total: -83.74 -0.81 -84.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482244839.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.159 kcal (2) G-P(sol) polarization free energy of solvation -83.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds