Wall clock time and date at job start Wed Apr 1 2020 05:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47155 * 2 1 4 4 C 1.42900 * 113.99801 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47111 * 179.97438 * 4 3 2 6 6 O 1.42902 * 109.46839 * 65.00291 * 5 4 3 7 7 C 1.42906 * 114.00086 * 180.02562 * 6 5 4 8 8 C 1.53034 * 109.46021 * 149.99388 * 7 6 5 9 9 C 1.53196 * 109.31423 * 181.38581 * 8 7 6 10 10 N 1.46927 * 108.77218 * 305.37159 * 9 8 7 11 11 C 1.34779 * 120.62578 * 233.58117 * 10 9 8 12 12 O 1.21589 * 120.00219 * 358.74078 * 11 10 9 13 13 C 1.47646 * 119.99566 * 179.01394 * 11 10 9 14 14 C 1.40009 * 119.89496 * 32.21799 * 13 11 10 15 15 C 1.36324 * 120.10472 * 179.71632 * 14 13 11 16 16 C 1.40888 * 119.88961 * 0.52686 * 15 14 13 17 17 C 1.41109 * 120.10294 * 179.72063 * 16 15 14 18 18 H 1.08001 * 119.99954 * 205.50620 * 17 16 15 19 19 C 1.40225 * 120.00032 * 25.50117 * 17 16 15 20 20 N 1.30642 * 119.99796 * 16.87208 * 19 17 16 21 21 Si 1.86803 * 120.00022 * 196.86889 * 19 17 16 22 22 H 1.48490 * 109.47078 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47022 * 120.00479 * 21 19 17 24 24 H 1.48498 * 109.46897 * 239.99776 * 21 19 17 25 25 C 1.40889 * 119.79640 * 359.75007 * 16 15 14 26 26 C 1.36323 * 119.89044 * 359.97438 * 25 16 15 27 27 C 1.46924 * 118.74135 * 53.85642 * 10 9 8 28 28 C 1.53036 * 109.45981 * 270.06758 * 7 6 5 29 29 H 1.09003 * 109.46983 * 299.99862 * 1 2 3 30 30 H 1.08998 * 109.47589 * 59.99971 * 1 2 3 31 31 H 1.09004 * 109.47347 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47448 * 239.99907 * 2 1 3 33 33 H 1.09006 * 109.46970 * 120.00103 * 2 1 3 34 34 H 1.08997 * 109.47290 * 60.00076 * 4 3 2 35 35 H 1.09007 * 109.47271 * 300.00077 * 4 3 2 36 36 H 1.08993 * 109.47347 * 305.00352 * 5 4 3 37 37 H 1.08998 * 109.47437 * 184.99827 * 5 4 3 38 38 H 1.09002 * 109.45661 * 30.02320 * 7 6 5 39 39 H 1.09000 * 109.49631 * 61.43588 * 8 7 6 40 40 H 1.09004 * 109.52978 * 301.35545 * 8 7 6 41 41 H 1.08993 * 109.58856 * 185.58280 * 9 8 7 42 42 H 1.08997 * 109.70191 * 65.22293 * 9 8 7 43 43 H 1.07998 * 119.94927 * 359.97438 * 14 13 11 44 44 H 1.07999 * 120.05404 * 180.27590 * 15 14 13 45 45 H 0.97005 * 120.00069 * 180.02562 * 20 19 17 46 46 H 1.07994 * 120.05561 * 179.97438 * 25 16 15 47 47 H 1.07992 * 119.94681 * 180.02562 * 26 25 16 48 48 H 1.08996 * 109.58423 * 65.92813 * 27 10 9 49 49 H 1.09009 * 109.58448 * 186.35166 * 27 10 9 50 50 H 1.09006 * 109.49629 * 298.56435 * 28 7 6 51 51 H 1.08999 * 109.49944 * 58.62397 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 8 3.3986 3.5457 1.2199 7 6 3.7194 4.9345 1.3215 8 6 2.6684 5.6389 2.1823 9 6 2.9961 7.1334 2.2604 10 7 4.3751 7.2904 2.7426 11 6 4.6453 8.0702 3.8082 12 8 3.7467 8.6701 4.3661 13 6 6.0333 8.2009 4.2943 14 6 7.0990 8.1350 3.3887 15 6 8.3819 8.2609 3.8321 16 6 8.6350 8.4464 5.2056 17 6 9.9616 8.5713 5.6702 18 1 10.2044 8.3051 6.6884 19 6 10.9645 9.0409 4.8100 20 7 10.6410 9.6663 3.7096 21 14 12.7630 8.7724 5.2377 22 1 12.8615 8.0442 6.5280 23 1 13.4124 7.9740 4.1671 24 1 13.4446 10.0862 5.3579 25 6 7.5596 8.5062 6.1138 26 6 6.2798 8.3849 5.6603 27 6 5.4547 6.5861 2.0375 28 6 5.0986 5.0935 1.9654 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8332 0.9767 -0.8908 35 1 3.8340 0.9763 0.8892 36 1 3.3493 3.4411 -0.8429 37 1 4.9082 3.0254 -0.0912 38 1 3.7303 5.3784 0.3260 39 1 2.6742 5.2123 3.1853 40 1 1.6829 5.5055 1.7360 41 1 2.3095 7.6225 2.9513 42 1 2.9014 7.5825 1.2718 43 1 6.9041 7.9885 2.3366 44 1 9.2031 8.2145 3.1322 45 1 11.3348 9.9909 3.1143 46 1 7.7489 8.6478 7.1676 47 1 5.4548 8.4310 6.3556 48 1 5.5569 6.9893 1.0301 49 1 6.3907 6.7141 2.5813 50 1 5.0816 4.6719 2.9705 51 1 5.8430 4.5712 1.3644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525748720.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:40 Heat of formation + Delta-G solvation = -100.569279 kcal Electronic energy + Delta-G solvation = -30220.271041 eV Core-core repulsion = 26084.770499 eV Total energy + Delta-G solvation = -4135.500542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.01156 -38.78850 -37.94958 -37.14524 -35.94316 -33.95146 -32.53304 -31.73317 -31.02450 -29.85122 -29.51892 -29.09809 -26.13414 -24.51831 -23.42929 -23.09096 -22.66432 -21.77233 -21.00897 -20.45607 -18.83777 -17.58005 -17.34324 -17.04158 -16.49044 -15.99766 -15.76155 -15.42206 -15.19082 -15.12676 -14.78680 -14.27879 -14.01377 -13.92785 -13.64155 -13.41613 -13.30609 -12.96368 -12.82332 -12.70854 -12.42703 -12.29824 -12.13237 -11.93736 -11.72562 -11.63268 -11.46193 -11.44908 -11.28130 -11.20544 -11.10665 -11.04491 -10.74837 -10.54749 -10.50204 -10.04237 -9.90053 -9.61646 -9.43801 -9.35933 -8.87861 -8.27681 -7.65995 -7.53267 -7.01933 -4.59796 2.26300 2.90638 2.94810 2.96771 3.00679 3.35201 3.44278 3.51446 3.74572 3.80275 4.48092 4.64855 4.70601 4.77913 4.81737 4.91883 4.94895 5.02241 5.03110 5.12510 5.15760 5.20876 5.34683 5.37120 5.45274 5.48744 5.52913 5.58219 5.64365 5.69899 5.79656 5.80746 5.90185 6.00766 6.11526 6.16201 6.18416 6.27657 6.33297 6.75648 6.82780 6.89578 6.92862 7.04631 7.12033 7.16285 7.42421 7.60029 7.77807 7.84529 8.04059 8.09289 8.39388 8.63698 8.74214 8.98253 9.90590 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014217 B = 0.002097 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.036980 B =13350.074263 C =14642.846594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.065 3.935 5 C 0.063 3.937 6 O -0.374 6.374 7 C 0.092 3.908 8 C -0.127 4.127 9 C 0.116 3.884 10 N -0.618 5.618 11 C 0.577 3.423 12 O -0.569 6.569 13 C -0.277 4.277 14 C -0.083 4.083 15 C -0.174 4.174 16 C 0.126 3.874 17 C -0.445 4.445 18 H 0.084 0.916 19 C 0.075 3.925 20 N -0.775 5.775 21 Si 0.912 3.088 22 H -0.258 1.258 23 H -0.269 1.269 24 H -0.272 1.272 25 C -0.234 4.234 26 C -0.027 4.027 27 C 0.079 3.921 28 C -0.155 4.155 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.109 0.891 44 H 0.121 0.879 45 H 0.285 0.715 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.061 0.939 49 H 0.135 0.865 50 H 0.076 0.924 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.118 -15.078 -11.061 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.012 4.012 5 C -0.013 4.013 6 O -0.293 6.293 7 C 0.034 3.966 8 C -0.165 4.165 9 C -0.007 4.007 10 N -0.352 5.352 11 C 0.372 3.628 12 O -0.450 6.450 13 C -0.281 4.281 14 C -0.101 4.101 15 C -0.194 4.194 16 C 0.123 3.877 17 C -0.473 4.473 18 H 0.102 0.898 19 C -0.146 4.146 20 N -0.398 5.398 21 Si 0.736 3.264 22 H -0.181 1.181 23 H -0.194 1.194 24 H -0.197 1.197 25 C -0.254 4.254 26 C -0.046 4.046 27 C -0.043 4.043 28 C -0.194 4.194 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.127 0.873 44 H 0.139 0.861 45 H 0.097 0.903 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.079 0.921 49 H 0.152 0.848 50 H 0.095 0.905 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.715 -14.561 -10.823 20.580 hybrid contribution 1.196 -0.228 -0.292 1.252 sum -8.519 -14.789 -11.115 20.368 Atomic orbital electron populations 1.21733 0.93734 1.02116 1.03265 1.22454 0.95730 0.83980 0.99878 1.87974 1.20619 1.26084 1.95371 1.22520 0.82084 0.95840 1.00744 1.22519 0.98413 0.92429 0.87976 1.87992 1.80587 1.23200 1.37526 1.22128 0.94597 0.81433 0.98419 1.21960 0.98391 0.95028 1.01142 1.21422 0.84739 0.94683 0.99860 1.47969 1.06844 1.48762 1.31632 1.18720 0.89505 0.76848 0.77697 1.90638 1.48692 1.47483 1.58189 1.18842 0.90319 1.24138 0.94801 1.20852 0.93156 0.98860 0.97267 1.21012 0.95093 1.06609 0.96660 1.17785 0.92615 0.85540 0.91758 1.19841 0.92271 1.36388 0.98819 0.89777 1.26075 1.02280 0.92268 0.93995 1.69746 1.36480 1.23652 1.09971 0.86187 0.80891 0.79215 0.80137 1.18114 1.19433 1.19718 1.20709 0.92158 1.13807 0.98676 1.20290 0.96046 0.94932 0.93341 1.22805 0.93934 0.90012 0.97561 1.22541 0.96703 0.97481 1.02647 0.91680 0.91927 0.91208 0.93651 0.93399 0.92046 0.92385 0.92618 0.91767 0.92297 0.90718 0.90469 0.88698 0.92221 0.87336 0.86124 0.90349 0.88387 0.88528 0.92115 0.84794 0.90483 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.15 0.38 -0.65 16 2 C 0.06 0.44 6.66 37.15 0.25 0.69 16 3 O -0.38 -4.13 10.31 -40.09 -0.41 -4.55 16 4 C 0.06 0.58 6.32 37.16 0.23 0.81 16 5 C 0.06 0.61 6.13 37.16 0.23 0.84 16 6 O -0.37 -4.75 9.95 -40.09 -0.40 -5.15 16 7 C 0.09 1.12 2.57 -26.70 -0.07 1.05 16 8 C -0.13 -1.64 5.73 -26.61 -0.15 -1.79 16 9 C 0.12 1.69 6.43 -3.71 -0.02 1.66 16 10 N -0.62 -10.65 2.97 -173.69 -0.52 -11.17 16 11 C 0.58 12.43 7.44 -12.42 -0.09 12.34 16 12 O -0.57 -13.76 16.17 5.29 0.09 -13.68 16 13 C -0.28 -6.28 5.55 -104.73 -0.58 -6.86 16 14 C -0.08 -1.80 7.36 -39.61 -0.29 -2.09 16 15 C -0.17 -4.17 8.63 -39.27 -0.34 -4.51 16 16 C 0.13 3.17 5.57 -106.80 -0.59 2.58 16 17 C -0.45 -10.98 9.05 -37.75 -0.34 -11.32 16 18 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 19 C 0.07 1.73 5.15 -17.31 -0.09 1.64 16 20 N -0.77 -18.48 10.95 55.56 0.61 -17.87 16 21 Si 0.91 17.16 29.59 -169.99 -5.03 12.13 16 22 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 23 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 24 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 25 C -0.23 -5.61 9.73 -39.27 -0.38 -5.99 16 26 C -0.03 -0.63 9.53 -39.61 -0.38 -1.01 16 27 C 0.08 1.16 4.89 -3.49 -0.02 1.15 16 28 C -0.16 -1.99 5.71 -26.39 -0.15 -2.14 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 37 H 0.06 0.52 7.84 -51.93 -0.41 0.11 16 38 H 0.06 0.64 7.79 -51.93 -0.40 0.24 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.51 7.01 -51.93 -0.36 1.15 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.11 2.04 5.27 -52.49 -0.28 1.76 16 44 H 0.12 2.92 6.18 -52.49 -0.32 2.59 16 45 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 46 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 47 H 0.10 2.17 7.95 -52.49 -0.42 1.76 16 48 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 49 H 0.13 2.22 3.56 -53.98 -0.19 2.03 16 50 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 51 H 0.07 0.79 7.84 -51.93 -0.41 0.38 16 LS Contribution 407.44 15.07 6.14 6.14 Total: -1.00 -29.63 407.44 -10.19 -39.82 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -8.26 Total: 7.94 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -2.41 Total: -13.62 kcal Atomic # 7 Polarization: -29.13 SS G_CDS: 0.09 Total: -29.04 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.73 Total: -23.37 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -29.63 -10.19 -39.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525748720.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.748 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds