Wall clock time and date at job start Wed Apr 1 2020 04:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.50867 * 2 1 4 4 C 1.53097 * 109.54601 * 120.11099 * 2 1 3 5 5 N 1.47005 * 109.26250 * 176.80147 * 4 2 1 6 6 C 1.46899 * 111.00459 * 177.60753 * 5 4 2 7 7 C 1.52996 * 109.47568 * 189.68886 * 6 5 4 8 8 C 1.53002 * 109.47469 * 180.02562 * 7 6 5 9 9 O 1.45195 * 109.47233 * 179.97438 * 8 7 6 10 10 C 1.34227 * 117.00035 * 179.97438 * 9 8 7 11 11 O 1.20823 * 119.99892 * 359.97438 * 10 9 8 12 12 C 1.50702 * 120.00313 * 180.02562 * 10 9 8 13 13 C 1.50699 * 109.47357 * 180.02562 * 12 10 9 14 14 C 1.37640 * 120.12342 * 265.00068 * 13 12 10 15 15 C 1.38618 * 120.24795 * 179.97438 * 14 13 12 16 16 C 1.38666 * 120.49562 * 359.97438 * 15 14 13 17 17 C 1.37592 * 120.25360 * 0.02562 * 16 15 14 18 18 C 1.40699 * 120.13175 * 85.25071 * 13 12 10 19 19 C 1.41398 * 120.24131 * 0.02562 * 18 13 12 20 20 H 1.08002 * 120.00003 * 334.27023 * 19 18 13 21 21 C 1.39944 * 119.99914 * 154.27026 * 19 18 13 22 22 N 1.30818 * 119.99816 * 343.67071 * 21 19 18 23 23 Si 1.86800 * 119.99967 * 163.67619 * 21 19 18 24 24 H 1.48499 * 109.47368 * 59.99686 * 23 21 19 25 25 H 1.48503 * 109.46776 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47082 * 299.99622 * 23 21 19 27 27 C 1.47013 * 110.75926 * 301.38644 * 5 4 2 28 28 C 1.53101 * 109.25510 * 58.60902 * 27 5 4 29 29 O 1.43017 * 109.26239 * 303.15806 * 28 27 5 30 30 H 1.09006 * 109.46843 * 180.08190 * 1 2 3 31 31 H 1.08992 * 109.47358 * 300.08182 * 1 2 3 32 32 H 1.09001 * 109.47185 * 60.08823 * 1 2 3 33 33 H 1.09007 * 109.50575 * 56.86742 * 4 2 1 34 34 H 1.09004 * 109.50534 * 296.74467 * 4 2 1 35 35 H 1.08998 * 109.47013 * 69.68182 * 6 5 4 36 36 H 1.09001 * 109.46963 * 309.68546 * 6 5 4 37 37 H 1.08998 * 109.47528 * 59.99612 * 7 6 5 38 38 H 1.09001 * 109.46701 * 299.99821 * 7 6 5 39 39 H 1.08998 * 109.47164 * 59.99265 * 8 7 6 40 40 H 1.09001 * 109.46911 * 299.99568 * 8 7 6 41 41 H 1.08997 * 109.47115 * 59.99912 * 12 10 9 42 42 H 1.09004 * 109.46921 * 300.00048 * 12 10 9 43 43 H 1.07994 * 119.87924 * 359.97086 * 14 13 12 44 44 H 1.07996 * 119.75082 * 180.02562 * 15 14 13 45 45 H 1.08003 * 119.86961 * 180.02562 * 16 15 14 46 46 H 1.07992 * 120.12750 * 179.97438 * 17 16 15 47 47 H 0.97001 * 119.99886 * 180.02562 * 22 21 19 48 48 H 1.08990 * 109.51222 * 178.54335 * 27 5 4 49 49 H 1.09001 * 109.50322 * 298.68154 * 27 5 4 50 50 H 1.09007 * 109.50550 * 63.09190 * 28 27 5 51 51 H 1.09000 * 109.50844 * 183.21836 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0422 -0.7238 1.2481 5 7 3.5102 -0.7875 1.2035 6 6 4.0464 -1.4258 2.4131 7 6 5.5670 -1.2595 2.4462 8 6 6.1256 -1.9249 3.7056 9 8 7.5686 -1.7676 3.7367 10 6 8.2171 -2.2986 4.7851 11 8 7.5992 -2.8753 5.6486 12 6 9.7156 -2.1744 4.8860 13 6 10.1920 -2.8502 6.1459 14 6 10.3839 -2.1153 7.2937 15 6 10.8215 -2.7343 8.4542 16 6 11.0704 -4.0983 8.4733 17 6 10.8855 -4.8527 7.3376 18 6 10.4475 -4.2338 6.1520 19 6 10.2595 -4.9979 4.9772 20 1 9.5602 -4.6667 4.2237 21 6 10.9796 -6.1833 4.7908 22 7 12.0384 -6.4268 5.5195 23 14 10.4289 -7.4177 3.5015 24 1 10.4432 -6.7750 2.1628 25 1 11.3535 -8.5797 3.5021 26 1 9.0526 -7.8795 3.8142 27 6 3.9649 -1.4869 -0.0069 28 6 3.4334 -0.7555 -1.2424 29 8 2.0075 -0.6758 -1.1665 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5151 0.8892 32 1 -0.3633 0.5125 -0.8908 33 1 1.6347 -1.7345 1.2756 34 1 1.7282 -0.1797 2.1389 35 1 3.7970 -2.4868 2.4050 36 1 3.6104 -0.9567 3.2951 37 1 5.8164 -0.1985 2.4542 38 1 6.0030 -1.7285 1.5641 39 1 5.8761 -2.9859 3.6971 40 1 5.6896 -1.4562 4.5879 41 1 9.9919 -1.1204 4.9118 42 1 10.1786 -2.6504 4.0215 43 1 10.1928 -1.0524 7.2903 44 1 10.9690 -2.1500 9.3504 45 1 11.4107 -4.5702 9.3832 46 1 11.0803 -5.9147 7.3547 47 1 12.5377 -7.2483 5.3900 48 1 5.0545 -1.4998 -0.0323 49 1 3.5882 -2.5097 0.0006 50 1 3.8528 0.2501 -1.2786 51 1 3.7201 -1.3025 -2.1406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526001696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:13 Heat of formation + Delta-G solvation = -136.824956 kcal Electronic energy + Delta-G solvation = -29819.396373 eV Core-core repulsion = 25682.323667 eV Total energy + Delta-G solvation = -4137.072706 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.46318 -40.72170 -39.44653 -37.83015 -37.03494 -35.53658 -33.95027 -33.67663 -33.17398 -31.38918 -29.75263 -28.94665 -27.53167 -26.87504 -25.12770 -24.03619 -22.88348 -22.62100 -22.01898 -21.38699 -21.01098 -19.09893 -18.58067 -17.79005 -17.59104 -17.39635 -17.23156 -16.84347 -16.45534 -16.23561 -16.13963 -15.78348 -15.59839 -15.44529 -15.06357 -14.90827 -14.39396 -14.03825 -13.81241 -13.67490 -13.57040 -13.40077 -13.38269 -13.12722 -12.95704 -12.85311 -12.80818 -12.77049 -12.54033 -12.50895 -12.36990 -12.13877 -12.13840 -11.92312 -11.54593 -11.40311 -11.35374 -11.34616 -11.24670 -11.05514 -10.62415 -9.49755 -9.26395 -9.23295 -8.63256 -6.34181 0.91106 1.08490 1.34676 1.36455 1.44761 1.52613 1.83127 2.17800 2.67016 2.75871 2.84269 3.66059 3.75392 3.81302 3.90884 3.93781 4.02023 4.06988 4.13779 4.19422 4.23666 4.28605 4.33350 4.36564 4.46165 4.54078 4.56699 4.60207 4.61001 4.68696 4.69539 4.74360 4.77646 4.82233 4.95585 4.97939 5.01318 5.07184 5.10504 5.16125 5.26254 5.33663 5.49260 5.51459 5.73859 5.85742 5.88132 6.00340 6.11966 6.19135 6.21391 6.37708 6.69107 6.92687 6.94965 7.06407 8.33094 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.002034 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.725641 B =13765.089944 C =15206.856060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.085 3.915 3 H 0.068 0.932 4 C 0.024 3.976 5 N -0.541 5.541 6 C 0.063 3.937 7 C -0.101 4.101 8 C 0.063 3.937 9 O -0.361 6.361 10 C 0.467 3.533 11 O -0.533 6.533 12 C -0.042 4.042 13 C -0.202 4.202 14 C -0.085 4.085 15 C -0.242 4.242 16 C -0.113 4.113 17 C -0.191 4.191 18 C 0.097 3.903 19 C -0.486 4.486 20 H 0.070 0.930 21 C 0.038 3.962 22 N -0.822 5.822 23 Si 0.970 3.030 24 H -0.254 1.254 25 H -0.265 1.265 26 H -0.270 1.270 27 C 0.011 3.989 28 C 0.064 3.936 29 O -0.404 6.404 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.100 0.900 35 H 0.036 0.964 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.126 0.874 42 H 0.107 0.893 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.287 0.713 48 H 0.097 0.903 49 H 0.035 0.965 50 H 0.063 0.937 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.846 11.747 -12.186 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.028 3.972 3 H 0.086 0.914 4 C -0.104 4.104 5 N -0.266 5.266 6 C -0.065 4.065 7 C -0.139 4.139 8 C -0.012 4.012 9 O -0.278 6.278 10 C 0.311 3.689 11 O -0.421 6.421 12 C -0.079 4.079 13 C -0.203 4.203 14 C -0.103 4.103 15 C -0.261 4.261 16 C -0.131 4.131 17 C -0.211 4.211 18 C 0.095 3.905 19 C -0.515 4.515 20 H 0.088 0.912 21 C -0.178 4.178 22 N -0.448 5.448 23 Si 0.791 3.209 24 H -0.178 1.178 25 H -0.190 1.190 26 H -0.194 1.194 27 C -0.117 4.117 28 C -0.013 4.013 29 O -0.323 6.323 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.118 0.882 35 H 0.054 0.946 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.144 0.856 42 H 0.125 0.875 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.125 0.875 46 H 0.116 0.884 47 H 0.098 0.902 48 H 0.115 0.885 49 H 0.053 0.947 50 H 0.082 0.918 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -16.814 11.814 -12.070 23.832 hybrid contribution -0.131 -1.882 0.184 1.895 sum -16.945 9.932 -11.886 22.958 Atomic orbital electron populations 1.21761 0.91476 1.02977 1.03699 1.22297 0.95886 0.95429 0.83627 0.91392 1.22880 0.86985 1.00244 1.00318 1.62174 1.09412 1.52875 1.02165 1.21933 0.93839 0.97438 0.93301 1.21408 0.94479 1.02435 0.95547 1.23053 0.76704 1.01056 1.00348 1.86483 1.23504 1.72173 1.45678 1.24377 0.92226 0.74061 0.78238 1.90625 1.69755 1.40419 1.41334 1.20007 0.85715 1.03388 0.98803 1.19470 1.12394 0.93398 0.95074 1.20772 0.98253 0.98723 0.92547 1.20747 1.12063 0.94732 0.98550 1.20987 0.99992 0.94884 0.97226 1.21296 1.07594 0.99123 0.93075 1.17743 0.88644 0.91287 0.92855 1.19604 1.21651 1.06249 1.04029 0.91210 1.26658 0.93004 0.99495 0.98611 1.69860 1.12820 1.25080 1.37005 0.85434 0.78957 0.77618 0.78892 1.17789 1.18960 1.19447 1.22925 1.02090 0.95928 0.90783 1.22751 0.80212 1.00783 0.97525 1.87968 1.22025 1.78729 1.43591 0.92361 0.89074 0.91373 0.94558 0.88204 0.94601 0.89214 0.89381 0.90617 0.92568 0.91176 0.85646 0.87549 0.86130 0.86397 0.87473 0.88424 0.90189 0.88501 0.94674 0.91843 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.57 71.98 0.69 -0.82 16 2 C 0.09 1.24 3.42 30.63 0.10 1.34 16 3 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 4 C 0.02 0.35 4.93 86.32 0.43 0.77 16 5 N -0.54 -9.07 4.73 -895.25 -4.23 -13.31 16 6 C 0.06 1.07 4.96 86.30 0.43 1.50 16 7 C -0.10 -1.98 5.52 30.59 0.17 -1.81 16 8 C 0.06 1.68 5.47 71.98 0.39 2.07 16 9 O -0.36 -11.83 10.22 -51.39 -0.53 -12.36 16 10 C 0.47 18.53 7.61 71.24 0.54 19.07 16 11 O -0.53 -25.11 15.78 21.97 0.35 -24.76 16 12 C -0.04 -1.64 5.30 29.10 0.15 -1.48 16 13 C -0.20 -9.57 4.43 -19.40 -0.09 -9.66 16 14 C -0.08 -3.72 9.66 22.22 0.21 -3.50 16 15 C -0.24 -10.70 10.05 22.46 0.23 -10.47 16 16 C -0.11 -5.42 10.02 22.22 0.22 -5.20 16 17 C -0.19 -10.42 8.68 22.73 0.20 -10.22 16 18 C 0.10 5.26 5.56 -21.29 -0.12 5.14 16 19 C -0.49 -26.04 8.15 23.46 0.19 -25.85 16 20 H 0.07 3.64 6.68 -2.91 -0.02 3.62 16 21 C 0.04 1.90 5.16 85.26 0.44 2.34 16 22 N -0.82 -43.12 10.97 21.83 0.24 -42.88 16 23 Si 0.97 38.76 29.59 68.60 2.03 40.79 16 24 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 25 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 27 C 0.01 0.17 5.43 86.32 0.47 0.64 16 28 C 0.06 0.95 7.01 72.02 0.50 1.46 16 29 O -0.40 -7.41 10.47 -148.98 -1.56 -8.97 16 30 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.10 1.18 8.09 -2.38 -0.02 1.16 16 35 H 0.04 0.65 8.12 -2.39 -0.02 0.63 16 36 H 0.09 1.38 8.04 -2.39 -0.02 1.36 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 1.48 6.51 -2.39 -0.02 1.46 16 39 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 40 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 41 H 0.13 3.87 8.05 -2.39 -0.02 3.85 16 42 H 0.11 4.17 7.04 -2.38 -0.02 4.15 16 43 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 44 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 45 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 46 H 0.10 5.56 6.22 -2.91 -0.02 5.54 16 47 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 48 H 0.10 1.46 6.37 -2.39 -0.02 1.44 16 49 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 51 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -66.16 411.16 2.37 -63.79 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: 0.91 Total: 32.36 kcal Atomic # 6 Polarization: -39.84 SS G_CDS: 5.17 Total: -34.67 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -3.99 Total: -56.18 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -1.74 Total: -46.09 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -66.16 2.37 -63.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526001696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.034 kcal (2) G-P(sol) polarization free energy of solvation -66.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds