Wall clock time and date at job start Wed Apr 1 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99803 * 2 1 4 4 H 1.48506 * 109.47048 * 269.99331 * 3 2 1 5 5 H 1.48491 * 109.47483 * 29.99695 * 3 2 1 6 6 H 1.48504 * 109.46946 * 149.99956 * 3 2 1 7 7 C 1.38950 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00097 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99919 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00002 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99723 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46782 * 180.02562 * 12 10 9 14 14 C 1.48734 * 110.99879 * 284.52168 * 13 12 10 15 15 C 1.55904 * 104.36559 * 198.76127 * 14 13 12 16 16 H 1.09000 * 113.09187 * 263.10116 * 15 14 13 17 17 C 1.53998 * 108.94655 * 136.69506 * 15 14 13 18 18 N 1.48317 * 104.57768 * 224.42270 * 17 15 14 19 19 C 1.34770 * 128.20438 * 221.86480 * 18 17 15 20 20 O 1.21286 * 120.00178 * 179.68095 * 19 18 17 21 21 C 1.50702 * 120.00129 * 359.68121 * 19 18 17 22 22 C 1.53885 * 113.65767 * 80.84897 * 21 19 18 23 23 C 1.53256 * 86.88533 * 89.62137 * 22 21 19 24 24 C 1.52458 * 128.58859 * 165.10861 * 23 22 21 25 25 C 1.52458 * 128.58263 * 245.05784 * 23 22 21 26 26 C 1.53255 * 87.69439 * 25.08177 * 23 22 21 27 27 C 1.48315 * 103.59036 * 41.61008 * 18 17 15 28 28 C 1.54415 * 104.36702 * 318.35290 * 27 18 17 29 29 H 1.09005 * 112.57216 * 262.59791 * 28 27 18 30 30 C 1.48734 * 110.99923 * 169.99755 * 13 12 10 31 31 H 0.97001 * 119.99654 * 0.02562 * 1 2 3 32 32 H 0.97002 * 120.00243 * 0.02562 * 9 7 2 33 33 H 1.08995 * 109.47365 * 59.99781 * 12 10 9 34 34 H 1.09005 * 109.47192 * 299.99322 * 12 10 9 35 35 H 1.08998 * 110.45813 * 317.78347 * 14 13 12 36 36 H 1.09002 * 110.45226 * 80.21739 * 14 13 12 37 37 H 1.09001 * 110.38793 * 105.61640 * 17 15 14 38 38 H 1.08996 * 110.32279 * 343.20013 * 17 15 14 39 39 H 1.09002 * 112.83063 * 309.66597 * 21 19 18 40 40 H 1.09005 * 113.64625 * 204.11344 * 22 21 19 41 41 H 1.08996 * 113.65300 * 335.11891 * 22 21 19 42 42 H 1.09004 * 117.51610 * 225.04505 * 24 23 22 43 43 H 1.08993 * 117.51436 * 10.15380 * 24 23 22 44 44 H 1.09003 * 117.51724 * 349.84244 * 25 23 22 45 45 H 1.09004 * 117.51199 * 134.90771 * 25 23 22 46 46 H 1.09000 * 113.65059 * 220.42636 * 26 23 22 47 47 H 1.08996 * 113.64985 * 89.41176 * 26 23 22 48 48 H 1.08995 * 110.46087 * 77.07811 * 27 18 17 49 49 H 1.09005 * 110.45477 * 199.50934 * 27 18 17 50 50 H 1.09006 * 110.45543 * 42.21676 * 30 13 12 51 51 H 1.09000 * 110.56710 * 279.70721 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2102 -3.5578 0.0031 12 6 1.2438 -4.8629 0.0032 13 7 2.1985 -5.9795 0.0050 14 6 2.8105 -6.1595 -1.3386 15 6 3.3819 -7.6098 -1.3122 16 1 4.4440 -7.6465 -1.0700 17 6 3.0472 -8.3035 -2.6457 18 7 2.5760 -9.6546 -2.2557 19 6 2.8618 -10.8368 -2.8362 20 8 2.3951 -11.8619 -2.3863 21 6 3.7614 -10.8851 -4.0443 22 6 5.2601 -10.8219 -3.7011 23 6 5.2198 -12.3516 -3.6168 24 6 6.3854 -13.3342 -3.6016 25 6 5.4410 -13.2429 -2.3998 26 6 4.0168 -12.3105 -4.5654 27 6 1.7208 -9.3972 -1.0716 28 6 2.4999 -8.3404 -0.2587 29 1 3.0858 -8.7814 0.5477 30 6 1.5053 -7.2730 0.2468 31 1 -0.4850 0.8401 -0.0004 32 1 0.3534 -2.3907 0.0016 33 1 0.6175 -4.9212 -0.8869 34 1 0.6169 -4.9201 0.8931 35 1 2.0555 -6.0568 -2.1180 36 1 3.6142 -5.4390 -1.4907 37 1 3.9378 -8.3762 -3.2699 38 1 2.2587 -7.7609 -3.1672 39 1 3.4621 -10.1832 -4.8227 40 1 5.8795 -10.4452 -4.5152 41 1 5.4704 -10.3369 -2.7480 42 1 6.3084 -14.2168 -4.2367 43 1 7.3885 -12.9238 -3.4860 44 1 5.8229 -12.7725 -1.4937 45 1 4.7423 -14.0651 -2.2442 46 1 3.2302 -13.0186 -4.3049 47 1 4.2900 -12.3479 -5.6199 48 1 0.7524 -9.0029 -1.3795 49 1 1.5919 -10.3095 -0.4891 50 1 0.5758 -7.3191 -0.3209 51 1 1.3083 -7.4089 1.3102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569880433.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:44 Heat of formation + Delta-G solvation = 2.517762 kcal Electronic energy + Delta-G solvation = -30581.687532 eV Core-core repulsion = 26482.949930 eV Total energy + Delta-G solvation = -4098.737602 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.08261 -39.96667 -38.36349 -37.72966 -35.69240 -33.96734 -33.85361 -31.67540 -31.13594 -30.66439 -27.60626 -26.23962 -26.02504 -25.39758 -24.22709 -22.99614 -22.61973 -21.42351 -19.85220 -19.67636 -19.05881 -18.39458 -17.84072 -17.27089 -16.42140 -16.02262 -15.99073 -15.64788 -15.40752 -15.32718 -14.81545 -14.68736 -14.46858 -14.21596 -13.70566 -13.56306 -13.29089 -12.93233 -12.77891 -12.70124 -12.38698 -12.28297 -12.10087 -11.96135 -11.91211 -11.75644 -11.60398 -11.42843 -11.30173 -11.09300 -10.96438 -10.86510 -10.69751 -10.65151 -10.40066 -10.36610 -10.22435 -10.15546 -9.81628 -9.50039 -8.98059 -8.55619 -8.05771 -7.95903 -6.42255 -3.82990 2.39184 2.65248 3.16908 3.25715 3.31559 3.46179 3.89400 3.96035 4.01679 4.09884 4.19750 4.21094 4.28379 4.35008 4.52698 4.57353 4.65885 4.76993 4.88363 5.03496 5.08126 5.12600 5.13098 5.23793 5.25762 5.29329 5.34540 5.36352 5.37983 5.48211 5.53541 5.56327 5.59544 5.60672 5.71414 5.72378 5.76833 5.79690 5.81938 5.86734 5.88681 5.96118 6.04474 6.16701 6.25859 6.30254 7.00597 7.15351 7.33605 7.54545 7.96227 8.05669 8.61502 9.17866 9.54196 10.06197 10.75543 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024737 B = 0.001861 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.639962 B =15038.750444 C =15514.924160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.445 3.555 11 O -0.577 6.577 12 C 0.033 3.967 13 N -0.480 5.480 14 C 0.043 3.957 15 C -0.100 4.100 16 H 0.099 0.901 17 C 0.103 3.897 18 N -0.623 5.623 19 C 0.556 3.444 20 O -0.537 6.537 21 C -0.132 4.132 22 C -0.084 4.084 23 C -0.161 4.161 24 C -0.168 4.168 25 C -0.141 4.141 26 C -0.081 4.081 27 C 0.108 3.892 28 C -0.100 4.100 29 H 0.096 0.904 30 C 0.034 3.966 31 H 0.271 0.729 32 H 0.391 0.609 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.046 0.954 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.027 -23.045 -8.310 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.230 3.770 11 O -0.460 6.460 12 C -0.099 4.099 13 N -0.203 5.203 14 C -0.085 4.085 15 C -0.120 4.120 16 H 0.117 0.883 17 C -0.020 4.020 18 N -0.357 5.357 19 C 0.345 3.655 20 O -0.413 6.413 21 C -0.153 4.153 22 C -0.121 4.121 23 C -0.161 4.161 24 C -0.205 4.205 25 C -0.178 4.178 26 C -0.118 4.118 27 C -0.014 4.014 28 C -0.120 4.120 29 H 0.115 0.885 30 C -0.095 4.095 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.115 0.885 46 H 0.101 0.899 47 H 0.110 0.890 48 H 0.092 0.908 49 H 0.101 0.899 50 H 0.064 0.936 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.865 -23.402 -7.702 25.325 hybrid contribution -0.994 0.961 -0.576 1.498 sum 4.871 -22.440 -8.278 24.410 Atomic orbital electron populations 1.69611 1.05924 1.28114 1.50743 1.25255 0.95633 0.99697 0.97413 0.85865 0.79258 0.80866 0.78344 1.20458 1.20946 1.19419 1.19687 0.93335 0.82206 1.47510 0.87939 1.41868 1.09158 1.04589 1.64692 1.19692 0.88397 0.84439 0.84424 1.90510 1.13639 1.86976 1.54907 1.22063 0.94186 0.91887 1.01735 1.65441 1.26974 1.00837 1.27034 1.23578 0.99642 0.95390 0.89912 1.23154 1.00679 0.94705 0.93446 0.88268 1.22618 1.00092 0.82126 0.97128 1.49109 1.49260 1.06167 1.31142 1.19628 0.80523 0.81464 0.83859 1.90684 1.53505 1.32652 1.64496 1.22241 0.95849 1.00668 0.96523 1.22438 0.93306 0.93854 1.02515 1.22169 0.98542 0.93316 1.02081 1.22821 0.94763 1.00967 1.01960 1.22699 1.01917 1.01249 0.91957 1.22372 0.96452 0.94907 0.98080 1.22594 0.93313 0.99151 0.86361 1.22931 0.96515 0.94896 0.97635 0.88549 1.23328 0.95014 0.89461 1.01655 0.91908 0.77544 0.93122 0.89270 0.93888 0.88407 0.89959 0.90504 0.88017 0.88526 0.90893 0.88773 0.88775 0.88909 0.88487 0.89927 0.89015 0.90838 0.89884 0.93580 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.57 -14.09 5.29 -10.96 -0.06 -14.15 16 10 C 0.45 10.25 7.64 -10.98 -0.08 10.17 16 11 O -0.58 -15.24 14.85 5.55 0.08 -15.16 16 12 C 0.03 0.56 5.34 -4.98 -0.03 0.54 16 13 N -0.48 -7.47 4.99 -230.07 -1.15 -8.62 16 14 C 0.04 0.60 5.50 -1.26 -0.01 0.59 16 15 C -0.10 -1.07 4.23 -87.16 -0.37 -1.44 16 16 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 17 C 0.10 0.92 6.46 -2.52 -0.02 0.91 16 18 N -0.62 -6.44 3.31 -169.25 -0.56 -7.00 16 19 C 0.56 6.35 7.19 -10.99 -0.08 6.27 16 20 O -0.54 -7.89 16.11 5.55 0.09 -7.80 16 21 C -0.13 -1.11 3.31 -90.85 -0.30 -1.41 16 22 C -0.08 -0.63 7.40 -26.14 -0.19 -0.83 16 23 C -0.16 -1.36 2.77 -154.80 -0.43 -1.79 16 24 C -0.17 -1.23 10.53 -26.94 -0.28 -1.52 16 25 C -0.14 -1.26 10.53 -26.94 -0.28 -1.54 16 26 C -0.08 -0.67 7.48 -26.13 -0.20 -0.86 16 27 C 0.11 1.10 6.59 -2.30 -0.02 1.08 16 28 C -0.10 -1.04 4.12 -87.75 -0.36 -1.40 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 30 C 0.03 0.39 5.95 -2.07 -0.01 0.38 16 31 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 33 H 0.05 0.78 7.77 -51.93 -0.40 0.38 16 34 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 35 H 0.04 0.56 6.86 -51.93 -0.36 0.20 16 36 H 0.10 1.64 7.25 -51.93 -0.38 1.27 16 37 H 0.08 0.61 7.19 -51.93 -0.37 0.23 16 38 H 0.08 0.67 7.19 -51.93 -0.37 0.29 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.08 0.82 7.40 -51.93 -0.38 0.44 16 47 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.70 7.18 -51.93 -0.37 0.33 16 49 H 0.08 0.89 7.87 -51.93 -0.41 0.48 16 50 H 0.05 0.49 7.06 -51.93 -0.37 0.12 16 51 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 405.40 15.07 6.11 6.11 Total: -1.00 -32.72 405.40 -11.00 -43.72 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -8.32 Total: 9.38 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -2.90 Total: 1.28 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -1.04 Total: -53.34 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.17 Total: -22.96 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.72 -11.00 -43.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569880433.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.233 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds