Wall clock time and date at job start Wed Apr 1 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99803 * 2 1 4 4 H 1.48506 * 109.47048 * 269.99331 * 3 2 1 5 5 H 1.48491 * 109.47483 * 29.99695 * 3 2 1 6 6 H 1.48504 * 109.46946 * 149.99956 * 3 2 1 7 7 C 1.38950 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00097 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99919 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00002 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99723 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46782 * 180.02562 * 12 10 9 14 14 C 1.48734 * 110.99879 * 284.52168 * 13 12 10 15 15 C 1.55904 * 104.36559 * 198.76127 * 14 13 12 16 16 H 1.09000 * 113.09187 * 263.10116 * 15 14 13 17 17 C 1.53998 * 108.94655 * 136.69506 * 15 14 13 18 18 N 1.48317 * 104.57768 * 224.42270 * 17 15 14 19 19 C 1.34770 * 128.20438 * 221.86480 * 18 17 15 20 20 O 1.21286 * 120.00178 * 179.68095 * 19 18 17 21 21 C 1.50702 * 120.00129 * 359.68121 * 19 18 17 22 22 C 1.53885 * 113.65767 * 80.84897 * 21 19 18 23 23 C 1.53256 * 86.88533 * 89.62137 * 22 21 19 24 24 C 1.52458 * 128.58859 * 165.10861 * 23 22 21 25 25 C 1.52458 * 128.58263 * 245.05784 * 23 22 21 26 26 C 1.53255 * 87.69439 * 25.08177 * 23 22 21 27 27 C 1.48315 * 103.59036 * 41.61008 * 18 17 15 28 28 C 1.54415 * 104.36702 * 318.35290 * 27 18 17 29 29 H 1.09005 * 112.57216 * 262.59791 * 28 27 18 30 30 C 1.48734 * 110.99923 * 169.99755 * 13 12 10 31 31 H 0.97001 * 119.99654 * 0.02562 * 1 2 3 32 32 H 0.97002 * 120.00243 * 0.02562 * 9 7 2 33 33 H 1.08995 * 109.47365 * 59.99781 * 12 10 9 34 34 H 1.09005 * 109.47192 * 299.99322 * 12 10 9 35 35 H 1.08998 * 110.45813 * 317.78347 * 14 13 12 36 36 H 1.09002 * 110.45226 * 80.21739 * 14 13 12 37 37 H 1.09001 * 110.38793 * 105.61640 * 17 15 14 38 38 H 1.08996 * 110.32279 * 343.20013 * 17 15 14 39 39 H 1.09002 * 112.83063 * 309.66597 * 21 19 18 40 40 H 1.09005 * 113.64625 * 204.11344 * 22 21 19 41 41 H 1.08996 * 113.65300 * 335.11891 * 22 21 19 42 42 H 1.09004 * 117.51610 * 225.04505 * 24 23 22 43 43 H 1.08993 * 117.51436 * 10.15380 * 24 23 22 44 44 H 1.09003 * 117.51724 * 349.84244 * 25 23 22 45 45 H 1.09004 * 117.51199 * 134.90771 * 25 23 22 46 46 H 1.09000 * 113.65059 * 220.42636 * 26 23 22 47 47 H 1.08996 * 113.64985 * 89.41176 * 26 23 22 48 48 H 1.08995 * 110.46087 * 77.07811 * 27 18 17 49 49 H 1.09005 * 110.45477 * 199.50934 * 27 18 17 50 50 H 1.09006 * 110.45543 * 42.21676 * 30 13 12 51 51 H 1.09000 * 110.56710 * 279.70721 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2102 -3.5578 0.0031 12 6 1.2438 -4.8629 0.0032 13 7 2.1985 -5.9795 0.0050 14 6 2.8105 -6.1595 -1.3386 15 6 3.3819 -7.6098 -1.3122 16 1 4.4440 -7.6465 -1.0700 17 6 3.0472 -8.3035 -2.6457 18 7 2.5760 -9.6546 -2.2557 19 6 2.8618 -10.8368 -2.8362 20 8 2.3951 -11.8619 -2.3863 21 6 3.7614 -10.8851 -4.0443 22 6 5.2601 -10.8219 -3.7011 23 6 5.2198 -12.3516 -3.6168 24 6 6.3854 -13.3342 -3.6016 25 6 5.4410 -13.2429 -2.3998 26 6 4.0168 -12.3105 -4.5654 27 6 1.7208 -9.3972 -1.0716 28 6 2.4999 -8.3404 -0.2587 29 1 3.0858 -8.7814 0.5477 30 6 1.5053 -7.2730 0.2468 31 1 -0.4850 0.8401 -0.0004 32 1 0.3534 -2.3907 0.0016 33 1 0.6175 -4.9212 -0.8869 34 1 0.6169 -4.9201 0.8931 35 1 2.0555 -6.0568 -2.1180 36 1 3.6142 -5.4390 -1.4907 37 1 3.9378 -8.3762 -3.2699 38 1 2.2587 -7.7609 -3.1672 39 1 3.4621 -10.1832 -4.8227 40 1 5.8795 -10.4452 -4.5152 41 1 5.4704 -10.3369 -2.7480 42 1 6.3084 -14.2168 -4.2367 43 1 7.3885 -12.9238 -3.4860 44 1 5.8229 -12.7725 -1.4937 45 1 4.7423 -14.0651 -2.2442 46 1 3.2302 -13.0186 -4.3049 47 1 4.2900 -12.3479 -5.6199 48 1 0.7524 -9.0029 -1.3795 49 1 1.5919 -10.3095 -0.4891 50 1 0.5758 -7.3191 -0.3209 51 1 1.3083 -7.4089 1.3102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569880433.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:43 Heat of formation + Delta-G solvation = -18.926411 kcal Electronic energy + Delta-G solvation = -30582.617421 eV Core-core repulsion = 26482.949930 eV Total energy + Delta-G solvation = -4099.667491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.89004 -40.89470 -39.86763 -38.79779 -36.81480 -35.82858 -34.60561 -33.29060 -32.58396 -31.55765 -28.91096 -27.16070 -26.71764 -26.68819 -25.57673 -23.84688 -23.24107 -22.52078 -21.09244 -20.50795 -20.44627 -19.80601 -19.10519 -18.07140 -17.69511 -17.21827 -16.81202 -16.69308 -16.47281 -16.26200 -16.07243 -15.95231 -15.74247 -15.44887 -15.18748 -14.60466 -14.48020 -14.16185 -13.79211 -13.55169 -13.40786 -13.31743 -13.17956 -13.09576 -12.94252 -12.79191 -12.60980 -12.50476 -12.39100 -12.38739 -12.34185 -12.12202 -11.91655 -11.82148 -11.63368 -11.45780 -11.28111 -11.04538 -10.88876 -10.52215 -10.30559 -9.98023 -9.82514 -9.34132 -8.44396 -5.92606 1.39061 1.42819 1.55081 1.55613 1.86301 2.09229 2.30119 2.83802 2.84754 3.21069 3.26369 3.35046 3.41027 3.54957 3.60311 3.64690 3.75016 3.87502 3.96058 4.05458 4.06764 4.22791 4.25804 4.27208 4.34491 4.43045 4.53676 4.54801 4.61356 4.69895 4.73824 4.74394 4.75612 4.77194 4.78708 4.84901 4.88761 4.96764 5.01003 5.10359 5.12566 5.17529 5.23053 5.25270 5.28849 5.35105 5.43096 5.87634 5.91668 6.10656 6.52208 6.63707 7.11836 7.16013 7.60092 8.16233 8.72993 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024737 B = 0.001861 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.639962 B =15038.750444 C =15514.924160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.991 3.009 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.330 4.330 8 H 0.078 0.922 9 N -0.577 5.577 10 C 0.443 3.557 11 O -0.615 6.615 12 C 0.046 3.954 13 N -0.508 5.508 14 C 0.045 3.955 15 C -0.092 4.092 16 H 0.097 0.903 17 C 0.110 3.890 18 N -0.623 5.623 19 C 0.550 3.450 20 O -0.578 6.578 21 C -0.131 4.131 22 C -0.075 4.075 23 C -0.173 4.173 24 C -0.151 4.151 25 C -0.162 4.162 26 C -0.079 4.079 27 C 0.111 3.889 28 C -0.093 4.093 29 H 0.095 0.905 30 C 0.038 3.962 31 H 0.277 0.723 32 H 0.395 0.605 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.064 0.936 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.059 0.941 47 H 0.116 0.884 48 H 0.085 0.915 49 H 0.073 0.927 50 H 0.064 0.936 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.060 -23.186 -9.722 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.460 4.460 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.230 3.770 11 O -0.501 6.501 12 C -0.085 4.085 13 N -0.232 5.232 14 C -0.083 4.083 15 C -0.112 4.112 16 H 0.115 0.885 17 C -0.013 4.013 18 N -0.355 5.355 19 C 0.341 3.659 20 O -0.457 6.457 21 C -0.152 4.152 22 C -0.112 4.112 23 C -0.173 4.173 24 C -0.188 4.188 25 C -0.199 4.199 26 C -0.117 4.117 27 C -0.012 4.012 28 C -0.113 4.113 29 H 0.113 0.887 30 C -0.089 4.089 31 H 0.086 0.914 32 H 0.229 0.771 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.105 0.895 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.082 0.918 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.077 0.923 47 H 0.135 0.865 48 H 0.103 0.897 49 H 0.092 0.908 50 H 0.082 0.918 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.879 -23.543 -9.117 25.922 hybrid contribution -0.997 0.947 -0.089 1.378 sum 4.882 -22.595 -9.206 24.882 Atomic orbital electron populations 1.69671 1.06780 1.29170 1.50618 1.26011 0.96533 1.02336 0.96484 0.84950 0.77865 0.77035 0.78629 1.19592 1.19704 1.19877 1.19636 0.92642 0.84015 1.49669 0.90364 1.41942 1.09275 1.04707 1.65515 1.20775 0.88290 0.85872 0.82026 1.90483 1.15723 1.87875 1.56008 1.21902 0.93856 0.89105 1.03648 1.65362 1.27639 1.01964 1.28226 1.23497 0.98885 0.96288 0.89660 1.23052 1.00452 0.92888 0.94800 0.88493 1.22641 1.01345 0.81057 0.96243 1.49171 1.48915 1.06501 1.30962 1.20209 0.80348 0.80982 0.84398 1.90667 1.55168 1.34038 1.65862 1.22276 0.95814 1.01395 0.95693 1.22473 0.92822 0.92919 1.02982 1.22334 0.99209 0.94257 1.01540 1.22873 0.94761 1.00830 1.00339 1.22671 1.03048 1.01645 0.92587 1.22423 0.95617 0.94258 0.99361 1.22575 0.93736 0.98557 0.86346 1.22850 0.96248 0.94594 0.97560 0.88670 1.23368 0.95595 0.87459 1.02491 0.91404 0.77081 0.90841 0.87430 0.92661 0.92037 0.87909 0.89494 0.85630 0.86019 0.91752 0.87937 0.87681 0.89482 0.89841 0.92269 0.86549 0.89734 0.90804 0.91773 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.26 13.05 21.66 0.28 -48.97 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 3 Si 0.99 42.58 29.55 68.60 2.03 44.60 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.33 -18.53 9.68 84.04 0.81 -17.71 16 8 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 9 N -0.58 -29.10 5.29 -306.98 -1.62 -30.72 16 10 C 0.44 20.59 7.64 87.66 0.67 21.26 16 11 O -0.62 -33.40 14.85 -3.06 -0.05 -33.44 16 12 C 0.05 1.53 5.34 85.56 0.46 1.98 16 13 N -0.51 -15.25 4.99 -881.80 -4.40 -19.65 16 14 C 0.04 1.21 5.50 86.95 0.48 1.69 16 15 C -0.09 -1.84 4.23 -8.55 -0.04 -1.87 16 16 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 17 C 0.11 1.68 6.46 86.37 0.56 2.24 16 18 N -0.62 -11.76 3.31 -807.78 -2.68 -14.44 16 19 C 0.55 11.93 7.19 87.66 0.63 12.56 16 20 O -0.58 -17.08 16.11 -3.05 -0.05 -17.13 16 21 C -0.13 -1.91 3.31 -10.94 -0.04 -1.95 16 22 C -0.07 -0.94 7.40 30.98 0.23 -0.71 16 23 C -0.17 -2.70 2.77 -52.37 -0.14 -2.85 16 24 C -0.15 -1.99 10.53 30.46 0.32 -1.67 16 25 C -0.16 -2.92 10.53 30.46 0.32 -2.60 16 26 C -0.08 -1.18 7.48 30.98 0.23 -0.95 16 27 C 0.11 2.05 6.59 86.51 0.57 2.62 16 28 C -0.09 -1.79 4.12 -8.93 -0.04 -1.82 16 29 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 30 C 0.04 0.81 5.95 86.43 0.51 1.33 16 31 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 32 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 33 H 0.07 2.09 7.77 -2.39 -0.02 2.07 16 34 H 0.11 3.14 8.08 -2.38 -0.02 3.12 16 35 H 0.06 1.33 6.86 -2.39 -0.02 1.31 16 36 H 0.06 2.11 7.25 -2.39 -0.02 2.09 16 37 H 0.10 1.19 7.19 -2.39 -0.02 1.17 16 38 H 0.09 1.23 7.19 -2.39 -0.02 1.21 16 39 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.06 0.94 8.09 -2.39 -0.02 0.92 16 42 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 46 H 0.06 1.17 7.40 -2.39 -0.02 1.16 16 47 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.08 1.40 7.18 -2.39 -0.02 1.39 16 49 H 0.07 1.53 7.87 -2.38 -0.02 1.51 16 50 H 0.06 1.15 7.06 -2.38 -0.02 1.14 16 51 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -72.79 405.40 -0.27 -73.06 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.21 Total: 35.43 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 6.00 Total: 11.25 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -8.42 Total: -113.78 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -0.09 Total: -50.57 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -72.79 -0.27 -73.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569880433.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.137 kcal (2) G-P(sol) polarization free energy of solvation -72.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds