Wall clock time and date at job start Wed Apr 1 2020 04:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47299 * 2 1 4 4 N 1.46511 * 109.46614 * 120.00121 * 2 1 3 5 5 C 1.36934 * 119.99722 * 294.90038 * 4 2 1 6 6 H 1.08005 * 120.00291 * 37.14348 * 5 4 2 7 7 C 1.38807 * 120.00090 * 217.14757 * 5 4 2 8 8 N 1.31623 * 119.99674 * 21.26697 * 7 5 4 9 9 Si 1.86799 * 120.00456 * 201.27624 * 7 5 4 10 10 H 1.48504 * 109.46595 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47720 * 119.99500 * 9 7 5 12 12 H 1.48502 * 109.47029 * 239.99835 * 9 7 5 13 13 C 1.46494 * 119.99978 * 114.90379 * 4 2 1 14 14 C 1.53004 * 109.46838 * 269.99635 * 13 4 2 15 15 C 1.52999 * 109.47051 * 180.02562 * 14 13 4 16 16 N 1.46506 * 109.47343 * 180.02562 * 15 14 13 17 17 C 1.34772 * 119.99915 * 179.97438 * 16 15 14 18 18 O 1.21618 * 120.00361 * 0.02562 * 17 16 15 19 19 C 1.47312 * 119.99694 * 179.97438 * 17 16 15 20 20 C 1.37826 * 126.52810 * 0.02895 * 19 17 16 21 21 N 1.34781 * 108.25349 * 179.97438 * 20 19 17 22 22 H 0.96995 * 125.36461 * 180.02562 * 21 20 19 23 23 C 1.37311 * 109.26975 * 0.26661 * 21 20 19 24 24 C 1.48005 * 125.76302 * 179.70856 * 23 21 20 25 25 N 1.34176 * 126.69526 * 179.71042 * 24 23 21 26 26 N 1.28980 * 107.25170 * 179.82803 * 25 24 23 27 27 N 1.28725 * 108.98466 * 0.43430 * 26 25 24 28 28 H 0.97004 * 125.31961 * 179.73873 * 27 26 25 29 29 N 1.28866 * 109.35664 * 359.72367 * 27 26 25 30 30 C 1.35707 * 108.47037 * 359.55842 * 23 21 20 31 31 H 1.09005 * 109.47532 * 303.31557 * 1 2 3 32 32 H 1.09009 * 109.46673 * 63.31098 * 1 2 3 33 33 H 1.09005 * 109.47692 * 183.30780 * 1 2 3 34 34 H 1.08999 * 109.47210 * 239.98976 * 2 1 3 35 35 H 1.09006 * 109.46832 * 181.61717 * 3 2 1 36 36 H 1.08996 * 109.47388 * 301.61818 * 3 2 1 37 37 H 1.09002 * 109.47304 * 61.61551 * 3 2 1 38 38 H 0.97006 * 119.99373 * 180.02562 * 8 7 5 39 39 H 1.08999 * 109.47170 * 150.00238 * 13 4 2 40 40 H 1.08996 * 109.47468 * 29.99463 * 13 4 2 41 41 H 1.09006 * 109.47076 * 60.00177 * 14 13 4 42 42 H 1.08996 * 109.46951 * 300.00144 * 14 13 4 43 43 H 1.08999 * 109.47341 * 59.99629 * 15 14 13 44 44 H 1.09008 * 109.47019 * 300.00160 * 15 14 13 45 45 H 0.96997 * 119.99287 * 0.02562 * 16 15 14 46 46 H 1.08001 * 125.87350 * 359.97438 * 20 19 17 47 47 H 1.08004 * 126.46510 * 180.12261 * 30 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6907 1.1963 5 6 1.7756 -0.1651 2.4372 6 1 0.8338 0.3220 2.6427 7 6 2.7401 -0.2582 3.4311 8 7 4.0011 -0.4531 3.1081 9 14 2.2486 -0.1072 5.2269 10 1 0.7822 0.1072 5.3223 11 1 2.6149 -1.3531 5.9470 12 1 2.9577 1.0450 5.8390 13 6 2.7660 -1.9435 1.0648 14 6 1.7927 -3.1237 1.0930 15 6 2.5737 -4.4323 0.9563 16 7 1.6417 -5.5623 0.9827 17 6 2.1075 -6.8225 0.8763 18 8 3.3015 -7.0217 0.7588 19 6 1.1704 -7.9588 0.9033 20 6 -0.2002 -7.8890 1.0306 21 7 -0.6905 -9.1443 1.0108 22 1 -1.6281 -9.3820 1.0829 23 6 0.3469 -10.0340 0.8778 24 6 0.2209 -11.5076 0.8220 25 7 1.2199 -12.3932 0.6872 26 7 0.6908 -13.5695 0.6868 27 7 -0.5858 -13.4545 0.8055 28 1 -1.2156 -14.1919 0.8282 29 7 -0.8963 -12.2066 0.8896 30 6 1.5069 -9.3337 0.8028 31 1 -0.3634 0.5645 0.8588 32 1 -0.3633 0.4616 -0.9183 33 1 -0.3635 -1.0260 0.0593 34 1 1.8933 -0.5140 -0.8899 35 1 3.1297 1.4425 -0.0290 36 1 1.6532 1.9646 -0.8751 37 1 1.7005 1.9479 0.9041 38 1 4.6751 -0.5185 3.8027 39 1 3.4710 -2.0343 1.8911 40 1 3.3106 -1.9443 0.1207 41 1 1.0876 -3.0330 0.2667 42 1 1.2481 -3.1230 2.0371 43 1 3.2786 -4.5227 1.7828 44 1 3.1187 -4.4332 0.0123 45 1 0.6894 -5.4034 1.0760 46 1 -0.7814 -6.9841 1.1293 47 1 2.4993 -9.7454 0.6928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574264351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:53 Heat of formation + Delta-G solvation = 144.111717 kcal Electronic energy + Delta-G solvation = -29032.275228 eV Core-core repulsion = 24868.430008 eV Total energy + Delta-G solvation = -4163.845219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.87316 -41.63377 -38.93439 -36.72999 -34.86831 -34.79176 -33.79670 -32.48773 -31.85566 -31.25402 -29.67265 -28.55592 -26.16962 -25.48733 -25.00546 -24.31495 -23.53262 -22.25345 -21.06738 -20.80363 -19.71764 -19.55952 -19.35095 -18.49900 -17.58877 -16.36064 -16.24981 -15.42273 -15.27211 -15.05313 -14.95432 -14.58610 -14.39623 -14.09518 -13.82450 -13.76402 -13.21513 -13.16881 -12.84245 -12.72567 -12.56347 -12.37822 -11.82620 -11.66630 -11.58463 -11.45579 -11.43683 -11.36544 -11.27449 -10.93515 -10.74349 -10.59464 -10.38383 -10.17601 -9.92464 -9.74010 -9.52751 -9.45716 -9.33718 -8.73559 -8.47972 -8.43917 -6.51547 -5.73592 -3.31486 0.51023 1.03499 1.64580 1.76669 2.46926 2.53340 3.24724 3.36835 3.46353 3.47258 3.60355 3.64174 3.92058 4.50471 4.62363 4.78044 4.79961 5.00596 5.11188 5.28470 5.39909 5.56683 5.75406 5.77705 5.89354 5.90482 5.96999 6.11826 6.21267 6.27535 6.35139 6.42322 6.45918 6.48496 6.51865 6.73289 6.76434 6.79170 6.82038 6.86828 6.91493 7.16975 7.24440 7.36725 7.70517 7.74711 7.81400 7.88260 8.52137 8.57652 9.24705 9.87678 10.46245 11.25965 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017153 B = 0.001810 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.983448 B =15464.816987 C =15938.489072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 C -0.145 4.145 4 N -0.579 5.579 5 C -0.251 4.251 6 H 0.059 0.941 7 C 0.011 3.989 8 N -0.885 5.885 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.291 1.291 13 C 0.150 3.850 14 C -0.144 4.144 15 C 0.122 3.878 16 N -0.724 5.724 17 C 0.582 3.418 18 O -0.543 6.543 19 C -0.218 4.218 20 C 0.072 3.928 21 N -0.525 5.525 22 H 0.424 0.576 23 C 0.052 3.948 24 C 0.255 3.745 25 N -0.256 5.256 26 N -0.043 5.043 27 N -0.227 5.227 28 H 0.476 0.524 29 N -0.311 5.311 30 C -0.058 4.058 31 H 0.051 0.949 32 H 0.034 0.966 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.028 0.972 37 H 0.057 0.943 38 H 0.253 0.747 39 H 0.097 0.903 40 H 0.024 0.976 41 H 0.048 0.952 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.395 0.605 46 H 0.186 0.814 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.997 -21.381 -6.042 26.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 C -0.204 4.204 4 N -0.299 5.299 5 C -0.380 4.380 6 H 0.077 0.923 7 C -0.189 4.189 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.218 1.218 13 C 0.023 3.977 14 C -0.185 4.185 15 C -0.001 4.001 16 N -0.374 5.374 17 C 0.369 3.631 18 O -0.421 6.421 19 C -0.228 4.228 20 C -0.069 4.069 21 N -0.119 5.119 22 H 0.263 0.737 23 C -0.060 4.060 24 C -0.024 4.024 25 N -0.129 5.129 26 N -0.039 5.039 27 N -0.072 5.072 28 H 0.330 0.670 29 N -0.164 5.164 30 C -0.086 4.086 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.115 0.885 40 H 0.043 0.957 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.228 0.772 46 H 0.203 0.797 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -12.871 -22.196 -6.076 26.367 hybrid contribution -1.856 -0.035 1.193 2.207 sum -14.727 -22.231 -4.883 27.110 Atomic orbital electron populations 1.22204 0.98980 1.00435 0.99647 1.20415 0.91915 0.92309 0.89921 1.22036 1.00844 0.97878 0.99657 1.43866 1.64352 1.20539 1.01168 1.18919 0.97419 1.34461 0.87247 0.92312 1.25156 0.94555 1.00595 0.98610 1.69994 0.99391 1.51637 1.31757 0.86420 0.78123 0.77354 0.86021 1.20257 1.21488 1.21802 1.20824 0.93109 0.82865 1.00951 1.22482 1.00372 0.94259 1.01383 1.21466 0.92274 0.84462 1.01937 1.45992 1.10949 1.05856 1.74603 1.17343 0.87356 0.82005 0.76384 1.90790 1.15997 1.85172 1.50104 1.19765 0.92359 0.94251 1.16412 1.22484 0.94359 0.87498 1.02518 1.41493 1.09260 1.05416 1.55725 0.73749 1.16375 0.88298 0.82757 1.18576 1.22504 0.84719 0.94257 1.00963 1.76206 1.25315 0.93707 1.17702 1.78974 0.91918 1.18695 1.14278 1.47630 1.07260 1.06581 1.45772 0.66977 1.74933 1.26339 0.91324 1.23762 1.21032 0.97343 0.91005 0.99215 0.93022 0.94702 0.93784 0.93698 0.93332 0.95262 0.92404 0.93650 0.88521 0.95726 0.93326 0.91741 0.91439 0.91963 0.77173 0.79750 0.82178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.19 37.16 0.34 -2.36 16 2 C 0.16 3.25 3.37 -67.93 -0.23 3.02 16 3 C -0.15 -2.90 9.11 37.15 0.34 -2.56 16 4 N -0.58 -13.41 2.37 -165.67 -0.39 -13.80 16 5 C -0.25 -6.43 8.04 -15.06 -0.12 -6.55 16 6 H 0.06 1.53 7.14 -52.48 -0.37 1.15 16 7 C 0.01 0.29 4.96 -17.43 -0.09 0.21 16 8 N -0.89 -24.75 11.43 55.49 0.63 -24.12 16 9 Si 0.89 21.05 29.60 -169.99 -5.03 16.02 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.15 3.28 5.28 -4.04 -0.02 3.26 16 14 C -0.14 -2.55 5.65 -26.73 -0.15 -2.70 16 15 C 0.12 2.01 5.67 -4.04 -0.02 1.98 16 16 N -0.72 -9.83 5.55 -61.41 -0.34 -10.17 16 17 C 0.58 8.77 7.81 -12.57 -0.10 8.67 16 18 O -0.54 -10.50 16.93 5.26 0.09 -10.41 16 19 C -0.22 -2.54 6.14 -104.96 -0.64 -3.19 16 20 C 0.07 0.55 11.44 -16.41 -0.19 0.36 16 21 N -0.52 -3.65 6.01 -9.19 -0.06 -3.70 16 22 H 0.42 1.74 8.96 -40.82 -0.37 1.37 16 23 C 0.05 0.51 7.08 -82.31 -0.58 -0.07 16 24 C 0.26 2.52 8.20 -156.26 -1.28 1.24 16 25 N -0.26 -2.82 12.52 32.09 0.40 -2.42 16 26 N -0.04 -0.37 13.47 60.35 0.81 0.44 16 27 N -0.23 -1.25 7.90 60.35 0.48 -0.77 16 28 H 0.48 0.26 8.96 -340.34 -3.05 -2.79 16 29 N -0.31 -2.38 12.41 32.11 0.40 -1.98 16 30 C -0.06 -0.68 10.59 -39.09 -0.41 -1.10 16 31 H 0.05 0.97 7.32 -51.93 -0.38 0.59 16 32 H 0.03 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.86 7.77 -51.93 -0.40 0.46 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 1.24 7.50 -51.93 -0.39 0.85 16 38 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.10 2.45 5.48 -51.93 -0.28 2.17 16 40 H 0.02 0.52 7.88 -51.93 -0.41 0.11 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 45 H 0.39 4.08 7.39 -40.82 -0.30 3.78 16 46 H 0.19 0.75 7.44 -52.49 -0.39 0.36 16 47 H 0.16 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 399.38 15.07 6.02 6.02 Total: -1.00 -34.46 399.38 -9.44 -43.90 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -9.29 Total: 0.78 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -3.16 Total: 0.21 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 1.94 Total: -56.53 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.46 -9.44 -43.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574264351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.016 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds