Wall clock time and date at job start Wed Apr 1 2020 04:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47097 * 2 1 4 4 N 1.46507 * 109.46728 * 119.99806 * 2 1 3 5 5 C 1.46498 * 119.99733 * 294.62401 * 4 2 1 6 6 C 1.53006 * 109.46742 * 273.47617 * 5 4 2 7 7 N 1.46503 * 109.46644 * 184.65952 * 6 5 4 8 8 C 1.46500 * 120.00110 * 269.99987 * 7 6 5 9 9 C 1.36938 * 120.00003 * 90.00778 * 7 6 5 10 10 H 1.07997 * 119.99943 * 33.92624 * 9 7 6 11 11 C 1.38809 * 119.99807 * 213.93525 * 9 7 6 12 12 N 1.31619 * 120.00442 * 5.43297 * 11 9 7 13 13 Si 1.86808 * 119.99936 * 185.43561 * 11 9 7 14 14 H 1.48502 * 109.46808 * 59.99599 * 13 11 9 15 15 H 1.48500 * 109.47033 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46954 * 299.99859 * 13 11 9 17 17 C 1.34776 * 119.99726 * 114.62097 * 4 2 1 18 18 O 1.21620 * 120.00140 * 4.35775 * 17 4 2 19 19 C 1.47312 * 119.99617 * 184.35548 * 17 4 2 20 20 C 1.37824 * 126.53046 * 325.65479 * 19 17 4 21 21 N 1.34778 * 108.25876 * 180.02562 * 20 19 17 22 22 H 0.96992 * 125.37170 * 180.02562 * 21 20 19 23 23 C 1.37314 * 109.26364 * 0.26461 * 21 20 19 24 24 C 1.48008 * 125.76052 * 179.73148 * 23 21 20 25 25 N 1.34177 * 126.69503 * 179.71340 * 24 23 21 26 26 N 1.28984 * 107.24967 * 179.87353 * 25 24 23 27 27 N 1.28723 * 108.98696 * 0.39819 * 26 25 24 28 28 H 0.97006 * 125.32114 * 179.76876 * 27 26 25 29 29 N 1.28868 * 109.35703 * 359.74513 * 27 26 25 30 30 C 1.35699 * 108.47644 * 359.56689 * 23 21 20 31 31 H 1.09002 * 109.47548 * 300.00363 * 1 2 3 32 32 H 1.09002 * 109.46978 * 60.00203 * 1 2 3 33 33 H 1.09003 * 109.47570 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47066 * 239.99427 * 2 1 3 35 35 H 1.09005 * 109.46814 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47123 * 299.99016 * 3 2 1 37 37 H 1.08993 * 109.47377 * 60.00035 * 3 2 1 38 38 H 1.08991 * 109.47400 * 33.48033 * 5 4 2 39 39 H 1.09001 * 109.46626 * 153.48335 * 5 4 2 40 40 H 1.09000 * 109.47387 * 304.65721 * 6 5 4 41 41 H 1.08994 * 109.47090 * 64.66296 * 6 5 4 42 42 H 1.09004 * 109.46932 * 94.87549 * 8 7 6 43 43 H 1.08998 * 109.47025 * 214.87089 * 8 7 6 44 44 H 1.08994 * 109.47068 * 334.87684 * 8 7 6 45 45 H 0.96998 * 120.00112 * 179.97438 * 12 11 9 46 46 H 1.08003 * 125.87287 * 0.02562 * 20 19 17 47 47 H 1.07996 * 126.47330 * 180.16152 * 30 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.7639 -0.1251 2.5236 6 6 2.8671 0.8766 2.8710 7 7 2.6749 1.3588 4.2410 8 6 1.8557 2.5473 4.4910 9 6 3.2612 0.6988 5.2878 10 1 4.2251 0.2293 5.1583 11 6 2.6164 0.6330 6.5153 12 7 1.3969 1.1109 6.6446 13 14 3.4796 -0.1337 7.9838 14 1 4.7267 0.6189 8.2733 15 1 2.5841 -0.0812 9.1673 16 1 3.8146 -1.5479 7.6783 17 6 2.7013 -1.8462 1.0756 18 8 2.9812 -2.2748 -0.0276 19 6 3.1088 -2.5900 2.2800 20 6 3.4851 -2.0488 3.4904 21 7 3.7827 -3.0596 4.3308 22 1 4.0761 -2.9579 5.2496 23 6 3.6103 -4.2560 3.6793 24 6 3.8407 -5.5979 4.2596 25 7 3.6732 -6.7777 3.6429 26 7 3.9818 -7.6996 4.4905 27 7 4.3234 -7.1487 5.6026 28 1 4.5972 -7.6236 6.4029 29 7 4.2453 -5.8677 5.4864 30 6 3.1894 -4.0004 2.4148 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4424 0.0005 36 1 1.6768 1.9562 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 0.7993 0.3823 2.5236 39 1 1.7536 -0.9254 3.2635 40 1 3.8388 0.3894 2.7903 41 1 2.8242 1.7184 2.1801 42 1 0.8369 2.2425 4.7305 43 1 2.2736 3.1072 5.3276 44 1 1.8469 3.1764 3.6009 45 1 0.9462 1.0645 7.5022 46 1 3.5332 -0.9956 3.7252 47 1 2.9630 -4.7319 1.6533 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589688328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:01 Heat of formation + Delta-G solvation = 169.645313 kcal Electronic energy + Delta-G solvation = -31653.032508 eV Core-core repulsion = 27490.294508 eV Total energy + Delta-G solvation = -4162.738000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.49317 -41.21623 -39.21471 -36.59414 -35.28273 -34.43072 -33.43698 -32.53150 -31.39195 -30.73491 -28.89256 -28.22818 -26.97920 -26.03819 -24.62965 -24.10863 -23.63852 -22.91274 -20.70265 -20.67569 -20.11743 -19.23009 -18.68433 -17.61548 -17.21304 -16.86714 -16.50037 -15.40173 -15.13792 -14.70801 -14.51097 -14.05672 -13.98280 -13.91733 -13.61351 -13.46118 -13.27148 -13.11067 -12.72957 -12.70802 -12.39365 -12.15417 -12.02351 -11.84479 -11.68558 -11.46565 -11.42527 -11.19965 -11.14549 -11.03964 -10.97241 -10.91265 -10.69922 -10.53783 -10.29326 -10.20638 -9.89891 -9.42042 -8.79416 -8.76279 -8.28396 -7.86254 -6.78827 -5.95091 -3.54919 0.90890 1.48099 2.13571 2.24801 2.99336 3.08014 3.13622 3.23882 3.26843 3.37295 3.78469 3.85771 4.26336 4.37313 4.97039 5.17661 5.22363 5.25601 5.31852 5.38304 5.43792 5.52527 5.60302 5.65924 5.70314 5.77399 5.85604 5.96382 5.99283 6.10780 6.13272 6.23263 6.26591 6.33625 6.35320 6.45562 6.50596 6.64477 6.81787 6.86363 7.02554 7.11163 7.17465 7.54411 7.56499 7.60979 7.89413 8.07877 8.24071 8.70797 9.01138 9.62155 10.18431 11.06076 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.007694 B = 0.004888 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3638.182966 B = 5726.560499 C = 8917.084574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.134 3.866 3 C -0.163 4.163 4 N -0.600 5.600 5 C 0.073 3.927 6 C 0.122 3.878 7 N -0.596 5.596 8 C 0.156 3.844 9 C -0.277 4.277 10 H 0.062 0.938 11 C 0.022 3.978 12 N -0.889 5.889 13 Si 0.893 3.107 14 H -0.280 1.280 15 H -0.288 1.288 16 H -0.282 1.282 17 C 0.595 3.405 18 O -0.557 6.557 19 C -0.242 4.242 20 C 0.087 3.913 21 N -0.521 5.521 22 H 0.426 0.574 23 C 0.038 3.962 24 C 0.262 3.738 25 N -0.261 5.261 26 N -0.050 5.050 27 N -0.229 5.229 28 H 0.474 0.526 29 N -0.310 5.310 30 C -0.063 4.063 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.001 0.999 45 H 0.257 0.743 46 H 0.219 0.781 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.944 -7.002 -4.288 8.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 C -0.221 4.221 4 N -0.333 5.333 5 C -0.052 4.052 6 C -0.006 4.006 7 N -0.319 5.319 8 C 0.012 3.988 9 C -0.406 4.406 10 H 0.079 0.921 11 C -0.180 4.180 12 N -0.531 5.531 13 Si 0.723 3.277 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.209 1.209 17 C 0.385 3.615 18 O -0.437 6.437 19 C -0.251 4.251 20 C -0.054 4.054 21 N -0.114 5.114 22 H 0.264 0.736 23 C -0.074 4.074 24 C -0.018 4.018 25 N -0.134 5.134 26 N -0.046 5.046 27 N -0.075 5.075 28 H 0.328 0.672 29 N -0.162 5.162 30 C -0.091 4.091 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.019 0.981 45 H 0.067 0.933 46 H 0.235 0.765 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.016 -7.873 -4.534 9.306 hybrid contribution 0.536 -0.196 2.228 2.300 sum 2.552 -8.069 -2.306 8.771 Atomic orbital electron populations 1.22143 0.95455 1.02176 1.02114 1.20950 0.93735 0.93126 0.89118 1.22304 1.01718 0.95788 1.02307 1.48039 1.54786 1.22762 1.07692 1.22909 1.01137 0.99101 0.82052 1.21662 0.95645 0.95569 0.87704 1.43780 1.59084 1.28457 1.00614 1.20868 0.95940 0.86643 0.95391 1.18938 0.99202 1.32145 0.90343 0.92057 1.25298 0.95053 0.98769 0.98886 1.69951 1.11408 1.47465 1.24241 0.86550 0.79092 0.79280 0.82828 1.20630 1.21346 1.20866 1.17408 0.76787 0.79713 0.87641 1.90705 1.56787 1.68802 1.27372 1.19507 1.16982 0.93681 0.94945 1.24171 0.97177 0.95765 0.88317 1.41692 1.51053 1.04483 1.14141 0.73572 1.16394 1.17293 0.80520 0.93158 1.22568 0.99029 0.93668 0.86490 1.76143 1.18403 0.96031 1.22851 1.78890 1.12245 1.22785 0.90655 1.47608 1.43182 1.02754 1.13943 0.67190 1.75033 1.23235 0.97193 1.20726 1.20810 0.99802 0.94560 0.93924 0.92073 0.91910 0.92513 0.88570 0.92165 0.92053 0.91362 0.91042 0.89038 0.93624 0.92764 0.94623 0.94583 0.98069 0.93269 0.76523 0.82915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.26 37.16 0.34 -1.65 16 2 C 0.13 1.88 3.25 -67.93 -0.22 1.66 16 3 C -0.16 -2.02 7.91 37.16 0.29 -1.72 16 4 N -0.60 -9.74 2.42 -167.41 -0.40 -10.14 16 5 C 0.07 1.25 4.62 -4.04 -0.02 1.23 16 6 C 0.12 2.19 4.88 -4.04 -0.02 2.17 16 7 N -0.60 -12.85 2.89 -181.12 -0.52 -13.37 16 8 C 0.16 3.38 9.08 59.85 0.54 3.93 16 9 C -0.28 -6.42 8.15 -15.06 -0.12 -6.54 16 10 H 0.06 1.38 7.21 -52.49 -0.38 1.00 16 11 C 0.02 0.53 5.26 -17.43 -0.09 0.43 16 12 N -0.89 -23.04 11.02 55.49 0.61 -22.43 16 13 Si 0.89 19.19 29.56 -169.99 -5.02 14.16 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 17 C 0.59 10.83 7.60 -12.57 -0.10 10.73 16 18 O -0.56 -11.37 16.40 5.26 0.09 -11.28 16 19 C -0.24 -4.24 5.51 -104.96 -0.58 -4.81 16 20 C 0.09 1.49 9.35 -16.41 -0.15 1.33 16 21 N -0.52 -8.27 6.01 -9.19 -0.06 -8.33 16 22 H 0.43 6.34 8.96 -40.82 -0.37 5.98 16 23 C 0.04 0.61 7.08 -82.31 -0.58 0.03 16 24 C 0.26 3.93 8.20 -156.26 -1.28 2.65 16 25 N -0.26 -3.87 12.52 32.09 0.40 -3.47 16 26 N -0.05 -0.62 13.47 60.35 0.81 0.19 16 27 N -0.23 -2.26 7.90 60.35 0.48 -1.78 16 28 H 0.47 2.25 8.96 -340.33 -3.05 -0.80 16 29 N -0.31 -4.06 12.41 32.11 0.40 -3.66 16 30 C -0.06 -1.04 10.73 -39.09 -0.42 -1.46 16 31 H 0.06 0.78 6.88 -51.93 -0.36 0.42 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.44 6.91 -51.93 -0.36 1.08 16 35 H 0.06 0.78 8.05 -51.93 -0.42 0.36 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.89 6.06 -51.93 -0.31 0.57 16 38 H 0.07 1.24 6.72 -51.93 -0.35 0.89 16 39 H 0.09 1.74 5.01 -51.93 -0.26 1.48 16 40 H 0.05 0.83 6.52 -51.93 -0.34 0.49 16 41 H 0.05 0.91 4.92 -51.93 -0.26 0.65 16 42 H 0.04 0.84 7.18 -51.93 -0.37 0.47 16 43 H 0.04 0.84 7.84 -51.93 -0.41 0.43 16 44 H 0.00 0.01 7.84 -51.93 -0.41 -0.39 16 45 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 46 H 0.22 3.94 1.61 -52.48 -0.08 3.86 16 47 H 0.15 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 378.26 15.07 5.70 5.70 Total: -1.00 -29.51 378.26 -8.47 -37.97 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -8.54 Total: 8.45 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -2.40 Total: 7.98 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: 1.72 Total: -62.99 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.51 -8.47 -37.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589688328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.619 kcal (2) G-P(sol) polarization free energy of solvation -29.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds