Wall clock time and date at job start Wed Apr 1 2020 04:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47097 * 2 1 4 4 N 1.46507 * 109.46728 * 119.99806 * 2 1 3 5 5 C 1.46498 * 119.99733 * 294.62401 * 4 2 1 6 6 C 1.53006 * 109.46742 * 273.47617 * 5 4 2 7 7 N 1.46503 * 109.46644 * 184.65952 * 6 5 4 8 8 C 1.46500 * 120.00110 * 269.99987 * 7 6 5 9 9 C 1.36938 * 120.00003 * 90.00778 * 7 6 5 10 10 H 1.07997 * 119.99943 * 33.92624 * 9 7 6 11 11 C 1.38809 * 119.99807 * 213.93525 * 9 7 6 12 12 N 1.31619 * 120.00442 * 5.43297 * 11 9 7 13 13 Si 1.86808 * 119.99936 * 185.43561 * 11 9 7 14 14 H 1.48502 * 109.46808 * 59.99599 * 13 11 9 15 15 H 1.48500 * 109.47033 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46954 * 299.99859 * 13 11 9 17 17 C 1.34776 * 119.99726 * 114.62097 * 4 2 1 18 18 O 1.21620 * 120.00140 * 4.35775 * 17 4 2 19 19 C 1.47312 * 119.99617 * 184.35548 * 17 4 2 20 20 C 1.37824 * 126.53046 * 325.65479 * 19 17 4 21 21 N 1.34778 * 108.25876 * 180.02562 * 20 19 17 22 22 H 0.96992 * 125.37170 * 180.02562 * 21 20 19 23 23 C 1.37314 * 109.26364 * 0.26461 * 21 20 19 24 24 C 1.48008 * 125.76052 * 179.73148 * 23 21 20 25 25 N 1.34177 * 126.69503 * 179.71340 * 24 23 21 26 26 N 1.28984 * 107.24967 * 179.87353 * 25 24 23 27 27 N 1.28723 * 108.98696 * 0.39819 * 26 25 24 28 28 H 0.97006 * 125.32114 * 179.76876 * 27 26 25 29 29 N 1.28868 * 109.35703 * 359.74513 * 27 26 25 30 30 C 1.35699 * 108.47644 * 359.56689 * 23 21 20 31 31 H 1.09002 * 109.47548 * 300.00363 * 1 2 3 32 32 H 1.09002 * 109.46978 * 60.00203 * 1 2 3 33 33 H 1.09003 * 109.47570 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47066 * 239.99427 * 2 1 3 35 35 H 1.09005 * 109.46814 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47123 * 299.99016 * 3 2 1 37 37 H 1.08993 * 109.47377 * 60.00035 * 3 2 1 38 38 H 1.08991 * 109.47400 * 33.48033 * 5 4 2 39 39 H 1.09001 * 109.46626 * 153.48335 * 5 4 2 40 40 H 1.09000 * 109.47387 * 304.65721 * 6 5 4 41 41 H 1.08994 * 109.47090 * 64.66296 * 6 5 4 42 42 H 1.09004 * 109.46932 * 94.87549 * 8 7 6 43 43 H 1.08998 * 109.47025 * 214.87089 * 8 7 6 44 44 H 1.08994 * 109.47068 * 334.87684 * 8 7 6 45 45 H 0.96998 * 120.00112 * 179.97438 * 12 11 9 46 46 H 1.08003 * 125.87287 * 0.02562 * 20 19 17 47 47 H 1.07996 * 126.47330 * 180.16152 * 30 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.7639 -0.1251 2.5236 6 6 2.8671 0.8766 2.8710 7 7 2.6749 1.3588 4.2410 8 6 1.8557 2.5473 4.4910 9 6 3.2612 0.6988 5.2878 10 1 4.2251 0.2293 5.1583 11 6 2.6164 0.6330 6.5153 12 7 1.3969 1.1109 6.6446 13 14 3.4796 -0.1337 7.9838 14 1 4.7267 0.6189 8.2733 15 1 2.5841 -0.0812 9.1673 16 1 3.8146 -1.5479 7.6783 17 6 2.7013 -1.8462 1.0756 18 8 2.9812 -2.2748 -0.0276 19 6 3.1088 -2.5900 2.2800 20 6 3.4851 -2.0488 3.4904 21 7 3.7827 -3.0596 4.3308 22 1 4.0761 -2.9579 5.2496 23 6 3.6103 -4.2560 3.6793 24 6 3.8407 -5.5979 4.2596 25 7 3.6732 -6.7777 3.6429 26 7 3.9818 -7.6996 4.4905 27 7 4.3234 -7.1487 5.6026 28 1 4.5972 -7.6236 6.4029 29 7 4.2453 -5.8677 5.4864 30 6 3.1894 -4.0004 2.4148 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4424 0.0005 36 1 1.6768 1.9562 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 0.7993 0.3823 2.5236 39 1 1.7536 -0.9254 3.2635 40 1 3.8388 0.3894 2.7903 41 1 2.8242 1.7184 2.1801 42 1 0.8369 2.2425 4.7305 43 1 2.2736 3.1072 5.3276 44 1 1.8469 3.1764 3.6009 45 1 0.9462 1.0645 7.5022 46 1 3.5332 -0.9956 3.7252 47 1 2.9630 -4.7319 1.6533 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589688328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:00 Heat of formation + Delta-G solvation = 150.721625 kcal Electronic energy + Delta-G solvation = -31653.853100 eV Core-core repulsion = 27490.294508 eV Total energy + Delta-G solvation = -4163.558592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.52429 -42.52666 -40.56585 -38.12271 -36.79316 -35.47240 -34.54983 -33.88321 -33.02913 -32.03807 -30.13252 -29.74294 -28.04099 -27.79504 -25.67452 -25.30876 -25.19180 -24.19122 -22.31210 -21.91558 -21.30136 -20.39741 -19.87811 -19.02084 -18.46200 -18.23282 -17.87041 -16.91200 -16.60590 -16.15658 -15.87718 -15.41936 -15.23692 -15.14962 -15.00845 -14.85778 -14.66249 -14.41248 -14.31353 -13.88636 -13.61762 -13.39874 -13.20584 -13.17308 -13.06278 -12.83169 -12.71112 -12.67702 -12.48655 -12.35145 -12.26374 -12.10103 -12.07517 -12.02912 -11.95010 -11.64523 -11.42086 -10.84963 -10.58987 -10.11455 -9.66097 -9.14258 -8.56092 -7.78496 -5.39492 -0.12311 0.33357 0.87674 1.31642 1.44062 1.51214 1.54609 1.75518 1.86321 2.07669 2.40197 2.51351 2.72166 3.25190 3.35193 3.64458 3.90713 4.04988 4.08682 4.22140 4.24636 4.24958 4.31819 4.38249 4.44426 4.63954 4.70776 4.74992 4.77560 4.85047 4.92277 4.97951 5.01911 5.05856 5.12611 5.28002 5.36050 5.43758 5.47437 5.53839 5.55243 5.69335 5.72492 5.80981 5.82992 6.30604 6.39571 6.52314 7.03642 7.19475 7.30443 7.87343 8.38708 9.20928 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.007694 B = 0.004888 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3638.182966 B = 5726.560499 C = 8917.084574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 C -0.157 4.157 4 N -0.593 5.593 5 C 0.090 3.910 6 C 0.128 3.872 7 N -0.607 5.607 8 C 0.168 3.832 9 C -0.268 4.268 10 H 0.070 0.930 11 C -0.025 4.025 12 N -0.921 5.921 13 Si 0.941 3.059 14 H -0.281 1.281 15 H -0.303 1.303 16 H -0.261 1.261 17 C 0.591 3.409 18 O -0.584 6.584 19 C -0.252 4.252 20 C 0.084 3.916 21 N -0.515 5.515 22 H 0.431 0.569 23 C 0.049 3.951 24 C 0.245 3.755 25 N -0.282 5.282 26 N -0.047 5.047 27 N -0.196 5.196 28 H 0.495 0.505 29 N -0.308 5.308 30 C -0.076 4.076 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.013 0.987 43 H 0.011 0.989 44 H 0.032 0.968 45 H 0.248 0.752 46 H 0.210 0.790 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.605 -7.571 -4.469 9.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.025 3.975 3 C -0.215 4.215 4 N -0.325 5.325 5 C -0.036 4.036 6 C 0.001 3.999 7 N -0.331 5.331 8 C 0.023 3.977 9 C -0.398 4.398 10 H 0.088 0.912 11 C -0.223 4.223 12 N -0.565 5.565 13 Si 0.769 3.231 14 H -0.208 1.208 15 H -0.229 1.229 16 H -0.186 1.186 17 C 0.381 3.619 18 O -0.466 6.466 19 C -0.262 4.262 20 C -0.058 4.058 21 N -0.109 5.109 22 H 0.270 0.730 23 C -0.063 4.063 24 C -0.035 4.035 25 N -0.155 5.155 26 N -0.042 5.042 27 N -0.047 5.047 28 H 0.355 0.645 29 N -0.161 5.161 30 C -0.104 4.104 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.031 0.969 43 H 0.030 0.970 44 H 0.051 0.949 45 H 0.058 0.942 46 H 0.226 0.774 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.696 -8.457 -4.725 10.056 hybrid contribution 0.379 -0.086 2.281 2.314 sum 3.075 -8.543 -2.444 9.402 Atomic orbital electron populations 1.22098 0.94019 1.01867 1.03260 1.21188 0.94877 0.93824 0.87652 1.22247 1.01288 0.94512 1.03406 1.48045 1.54047 1.22280 1.08083 1.22572 1.00698 0.98183 0.82113 1.21688 0.95727 0.96277 0.86177 1.43960 1.58836 1.28632 1.01657 1.20657 0.94407 0.86853 0.95814 1.19231 0.99299 1.30666 0.90638 0.91219 1.25858 0.95578 0.99823 1.01082 1.70108 1.12796 1.49533 1.24035 0.85772 0.77683 0.79792 0.79861 1.20760 1.22944 1.18636 1.17565 0.76755 0.80100 0.87465 1.90682 1.58064 1.69568 1.28274 1.19555 1.17477 0.94187 0.94935 1.23896 0.97951 0.95525 0.88446 1.41646 1.50734 1.04268 1.14230 0.72979 1.16452 1.16001 0.80993 0.92861 1.22435 1.00451 0.93368 0.87207 1.76142 1.19318 0.96213 1.23852 1.78844 1.12225 1.22190 0.90983 1.47674 1.40922 1.01918 1.14213 0.64516 1.74988 1.22756 0.98437 1.19911 1.20876 1.00654 0.94305 0.94549 0.92390 0.89248 0.93572 0.89456 0.92783 0.89378 0.91787 0.91007 0.90806 0.93625 0.90965 0.96903 0.97034 0.94929 0.94241 0.77402 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.26 71.98 0.67 -2.90 16 2 C 0.13 3.39 3.25 44.99 0.15 3.53 16 3 C -0.16 -3.52 7.91 71.98 0.57 -2.95 16 4 N -0.59 -18.91 2.42 -801.80 -1.94 -20.84 16 5 C 0.09 3.02 4.62 86.38 0.40 3.42 16 6 C 0.13 4.45 4.88 86.38 0.42 4.87 16 7 N -0.61 -25.77 2.89 -726.94 -2.10 -27.86 16 8 C 0.17 7.19 9.08 127.77 1.16 8.35 16 9 C -0.27 -12.29 8.15 84.03 0.68 -11.60 16 10 H 0.07 3.05 7.21 -2.91 -0.02 3.03 16 11 C -0.03 -1.23 5.26 84.86 0.45 -0.79 16 12 N -0.92 -48.47 11.02 21.65 0.24 -48.23 16 13 Si 0.94 39.03 29.56 68.60 2.03 41.05 16 14 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 15 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 16 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 17 C 0.59 21.52 7.60 86.63 0.66 22.18 16 18 O -0.58 -23.96 16.40 -4.09 -0.07 -24.03 16 19 C -0.25 -8.84 5.51 -20.08 -0.11 -8.95 16 20 C 0.08 2.83 9.35 84.14 0.79 3.61 16 21 N -0.52 -15.96 6.01 -182.99 -1.10 -17.06 16 22 H 0.43 12.26 8.96 -92.71 -0.83 11.43 16 23 C 0.05 1.54 7.08 40.29 0.29 1.82 16 24 C 0.25 7.04 8.20 137.16 1.13 8.16 16 25 N -0.28 -8.04 12.52 -52.37 -0.66 -8.69 16 26 N -0.05 -1.07 13.47 37.02 0.50 -0.57 16 27 N -0.20 -3.37 7.90 37.02 0.29 -3.08 16 28 H 0.50 3.17 8.96 -347.50 -3.12 0.06 16 29 N -0.31 -7.40 12.41 -52.32 -0.65 -8.05 16 30 C -0.08 -2.52 10.73 22.59 0.24 -2.27 16 31 H 0.06 1.38 6.88 -2.39 -0.02 1.36 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 2.54 6.91 -2.39 -0.02 2.52 16 35 H 0.05 1.28 8.05 -2.38 -0.02 1.26 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 1.50 6.06 -2.39 -0.01 1.49 16 38 H 0.07 2.44 6.72 -2.39 -0.02 2.42 16 39 H 0.07 2.81 5.01 -2.39 -0.01 2.80 16 40 H 0.05 1.61 6.52 -2.39 -0.02 1.59 16 41 H 0.07 2.27 4.92 -2.39 -0.01 2.25 16 42 H 0.01 0.60 7.18 -2.38 -0.02 0.59 16 43 H 0.01 0.52 7.84 -2.39 -0.02 0.50 16 44 H 0.03 1.16 7.84 -2.39 -0.02 1.15 16 45 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16 46 H 0.21 7.47 1.61 -2.91 0.00 7.47 16 47 H 0.16 4.98 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -63.29 378.26 1.15 -62.14 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: -2.88 Total: 28.75 kcal Atomic # 6 Polarization: 19.01 SS G_CDS: 7.48 Total: 26.49 kcal Atomic # 7 Polarization: -128.98 SS G_CDS: -5.41 Total: -134.39 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.07 Total: -24.03 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.05 kcal Total: -63.29 1.15 -62.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589688328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.860 kcal (2) G-P(sol) polarization free energy of solvation -63.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds