Wall clock time and date at job start Wed Apr 1 2020 04:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47538 * 2 1 4 4 C 1.50702 * 109.47135 * 240.00260 * 2 1 3 5 5 N 1.28028 * 119.99745 * 119.72301 * 4 2 1 6 6 N 1.40105 * 119.99978 * 180.27942 * 5 4 2 7 7 C 1.38678 * 119.99994 * 180.02562 * 6 5 4 8 8 O 1.34763 * 126.59445 * 359.67647 * 7 6 5 9 9 C 1.34250 * 108.08741 * 179.89867 * 8 7 6 10 10 C 1.50705 * 125.34586 * 180.14464 * 9 8 7 11 11 C 1.53000 * 109.47179 * 240.26930 * 10 9 8 12 12 C 1.52997 * 109.47396 * 0.27359 * 10 9 8 13 13 C 1.52998 * 109.46605 * 120.27289 * 10 9 8 14 14 N 1.30024 * 109.30252 * 0.38277 * 9 8 7 15 15 C 1.35807 * 108.65042 * 359.76535 * 14 9 8 16 16 C 1.48199 * 126.42942 * 180.02562 * 15 14 9 17 17 N 1.33765 * 126.32687 * 179.66353 * 16 15 14 18 18 N 1.28568 * 109.84179 * 179.85525 * 17 16 15 19 19 N 1.28907 * 109.75205 * 0.41048 * 18 17 16 20 20 H 0.96998 * 126.42226 * 179.74248 * 19 18 17 21 21 N 1.32103 * 126.32103 * 359.97223 * 16 15 14 22 22 C 1.52995 * 109.47329 * 120.00599 * 2 1 3 23 23 C 1.50709 * 109.46758 * 294.99974 * 22 2 1 24 24 H 1.07991 * 119.99974 * 359.97438 * 23 22 2 25 25 C 1.37876 * 119.99611 * 180.02562 * 23 22 2 26 26 N 1.31518 * 119.99527 * 179.97438 * 25 23 22 27 27 Si 1.86799 * 120.00398 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.47262 * 89.99943 * 27 25 23 29 29 H 1.48493 * 109.47391 * 209.99854 * 27 25 23 30 30 H 1.48504 * 109.47117 * 330.00200 * 27 25 23 31 31 H 1.08994 * 109.46996 * 299.99741 * 1 2 3 32 32 H 1.09001 * 109.47339 * 59.99584 * 1 2 3 33 33 H 1.08996 * 109.47277 * 179.97438 * 1 2 3 34 34 H 1.08002 * 120.00299 * 300.00451 * 4 2 1 35 35 H 0.97000 * 119.99515 * 359.97438 * 6 5 4 36 36 H 1.08996 * 109.46904 * 60.00600 * 11 10 9 37 37 H 1.09000 * 109.47183 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.47364 * 300.00390 * 11 10 9 39 39 H 1.09000 * 109.47031 * 59.99483 * 12 10 9 40 40 H 1.09000 * 109.47191 * 179.97438 * 12 10 9 41 41 H 1.08996 * 109.47233 * 299.99734 * 12 10 9 42 42 H 1.09000 * 109.47689 * 59.99761 * 13 10 9 43 43 H 1.09004 * 109.47506 * 179.97438 * 13 10 9 44 44 H 1.09002 * 109.47872 * 299.99620 * 13 10 9 45 45 H 1.08998 * 109.47546 * 54.99854 * 22 2 1 46 46 H 1.09001 * 109.47447 * 175.00384 * 22 2 1 47 47 H 0.97008 * 119.99269 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.7640 -0.0865 -2.0759 6 7 3.2262 -0.7452 -3.2228 7 6 4.0192 -0.0697 -4.1382 8 8 4.4186 1.2151 -4.0612 9 6 5.1720 1.4828 -5.1396 10 6 5.8218 2.8085 -5.4420 11 6 5.2913 3.3447 -6.7731 12 6 5.4960 3.8026 -4.3255 13 6 7.3378 2.6240 -5.5342 14 7 5.2488 0.4200 -5.8847 15 6 4.5403 -0.5767 -5.2941 16 6 4.3659 -1.9560 -5.8073 17 7 3.6726 -2.9381 -5.2205 18 7 3.7282 -4.0018 -5.9405 19 7 4.4415 -3.7801 -6.9911 20 1 4.6438 -4.4164 -7.6947 21 7 4.8711 -2.4444 -6.9259 22 6 2.0400 -0.7213 1.2491 23 6 1.6413 0.0569 2.4766 24 1 1.0807 0.9744 2.3757 25 6 1.9933 -0.4019 3.7282 26 7 1.6458 0.2775 4.7993 27 14 2.9637 -1.9885 3.9026 28 1 4.4172 -1.6851 3.8778 29 1 2.6164 -2.6422 5.1899 30 1 2.6290 -2.8996 2.7787 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.7714 -1.7443 -1.4016 35 1 2.9921 -1.6740 -3.3761 36 1 4.2113 3.4761 -6.7074 37 1 5.7616 4.3033 -6.9920 38 1 5.5235 2.6364 -7.5685 39 1 5.8739 3.4206 -3.3772 40 1 5.9664 4.7613 -4.5440 41 1 4.4160 3.9340 -4.2598 42 1 7.5700 1.9158 -6.3296 43 1 7.8079 3.5828 -5.7533 44 1 7.7159 2.2421 -4.5859 45 1 1.6055 -1.7199 1.2950 46 1 3.1264 -0.7995 1.2055 47 1 1.8931 -0.0456 5.6799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589787030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:13 Heat of formation + Delta-G solvation = 171.791715 kcal Electronic energy + Delta-G solvation = -29768.116348 eV Core-core repulsion = 25605.471424 eV Total energy + Delta-G solvation = -4162.644925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.60599 -43.28032 -37.96429 -37.12442 -35.56043 -35.22113 -33.67573 -32.94376 -32.63747 -31.46380 -28.25189 -27.57666 -27.55300 -27.46244 -25.14703 -24.40977 -24.01624 -22.78016 -21.66790 -21.27638 -20.08052 -19.32226 -18.77928 -17.84818 -17.38879 -17.17720 -16.61610 -16.57345 -16.50201 -15.33457 -14.41246 -14.35854 -14.28166 -14.18017 -13.89250 -13.64333 -13.39706 -13.24520 -12.64659 -12.56530 -12.53425 -12.47571 -12.20501 -12.06182 -11.90860 -11.82475 -11.44879 -11.33670 -11.29597 -11.22403 -11.12154 -11.09320 -10.87878 -10.78658 -10.73145 -10.37726 -10.10643 -10.08713 -9.76251 -9.54944 -9.20627 -8.57841 -7.66667 -6.08237 -4.06785 0.53083 1.14068 1.67065 1.74150 1.85883 2.34837 2.85127 2.88491 3.16911 3.28604 3.36641 3.38307 3.73180 4.19050 4.41422 4.50837 4.61979 4.64840 4.79627 5.00855 5.09860 5.21140 5.23730 5.25713 5.36440 5.39413 5.46733 5.54183 5.61507 5.62178 5.69300 5.78810 5.83421 5.93259 6.01468 6.05099 6.10501 6.14207 6.19964 6.30174 6.59625 6.69149 6.75712 6.91145 7.11574 7.27872 7.47048 7.70671 7.81194 8.15942 8.47337 8.95979 9.53411 11.04673 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.002722 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.025308 B =10284.754322 C =12290.153258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.030 4.030 3 H 0.086 0.914 4 C 0.113 3.887 5 N -0.269 5.269 6 N -0.540 5.540 7 C 0.360 3.640 8 O -0.191 6.191 9 C 0.185 3.815 10 C 0.041 3.959 11 C -0.139 4.139 12 C -0.149 4.149 13 C -0.140 4.140 14 N -0.417 5.417 15 C -0.058 4.058 16 C 0.310 3.690 17 N -0.318 5.318 18 N 0.018 4.982 19 N -0.299 5.299 20 H 0.470 0.530 21 N -0.274 5.274 22 C -0.004 4.004 23 C -0.517 4.517 24 H 0.078 0.922 25 C 0.069 3.931 26 N -0.901 5.901 27 Si 0.876 3.124 28 H -0.278 1.278 29 H -0.288 1.288 30 H -0.265 1.265 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.420 0.580 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.022 0.978 46 H 0.014 0.986 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.201 -0.653 -25.927 26.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.051 4.051 3 H 0.105 0.895 4 C -0.101 4.101 5 N -0.072 5.072 6 N -0.270 5.270 7 C 0.196 3.804 8 O -0.075 6.075 9 C -0.027 4.027 10 C 0.039 3.961 11 C -0.197 4.197 12 C -0.207 4.207 13 C -0.197 4.197 14 N -0.144 5.144 15 C -0.185 4.185 16 C 0.029 3.971 17 N -0.198 5.198 18 N 0.021 4.979 19 N -0.147 5.147 20 H 0.325 0.675 21 N -0.118 5.118 22 C -0.042 4.042 23 C -0.555 4.555 24 H 0.096 0.904 25 C -0.133 4.133 26 N -0.539 5.539 27 Si 0.703 3.297 28 H -0.203 1.203 29 H -0.214 1.214 30 H -0.190 1.190 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.126 0.874 35 H 0.267 0.733 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.040 0.960 46 H 0.033 0.967 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.834 -0.324 -26.572 27.705 hybrid contribution 0.041 -2.279 0.423 2.319 sum 7.875 -2.603 -26.150 27.434 Atomic orbital electron populations 1.21696 0.93628 1.01716 1.01794 1.20202 0.95972 1.00109 0.88860 0.89533 1.26825 0.91015 0.98255 0.93994 1.74461 1.13363 1.24532 0.94827 1.44981 1.50777 1.12517 1.18701 1.18666 0.91008 0.81902 0.88870 1.84494 1.54864 1.24597 1.43557 1.25701 0.96877 0.97677 0.82438 1.19072 0.94902 0.84656 0.97450 1.21914 1.01466 1.01418 0.94883 1.21930 1.02905 0.98274 0.97558 1.21919 0.91833 1.02847 1.03146 1.70350 1.18089 0.97610 1.28302 1.16803 1.14261 0.91229 0.96239 1.21808 0.93223 0.92781 0.89271 1.75222 1.23081 0.95998 1.25502 1.78274 1.06963 1.18845 0.93769 1.51034 1.34469 1.10265 1.18932 0.67512 1.79136 1.22707 0.90127 1.19823 1.19625 0.96018 0.96341 0.92245 1.21019 1.35989 1.09719 0.88735 0.90440 1.24980 0.95512 0.96855 0.95905 1.69903 1.46796 1.39154 0.98083 0.86845 0.80754 0.84436 0.77633 1.20340 1.21362 1.19007 0.90061 0.94269 0.93022 0.87431 0.73273 0.92137 0.91003 0.91206 0.91483 0.90993 0.91574 0.91205 0.90994 0.92066 0.95971 0.96744 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.99 37.16 0.33 -1.80 16 2 C -0.03 -0.55 2.75 -91.77 -0.25 -0.80 16 3 H 0.09 1.67 8.11 -51.93 -0.42 1.25 16 4 C 0.11 1.81 9.66 -13.86 -0.13 1.67 16 5 N -0.27 -4.51 11.28 32.68 0.37 -4.14 16 6 N -0.54 -8.24 6.42 30.98 0.20 -8.04 16 7 C 0.36 5.55 8.15 -15.06 -0.12 5.43 16 8 O -0.19 -2.87 10.11 4.58 0.05 -2.82 16 9 C 0.19 2.40 6.45 -13.04 -0.08 2.32 16 10 C 0.04 0.38 0.99 -155.66 -0.15 0.22 16 11 C -0.14 -1.08 8.46 37.16 0.31 -0.76 16 12 C -0.15 -1.29 8.01 37.16 0.30 -0.99 16 13 C -0.14 -1.12 8.45 37.16 0.31 -0.81 16 14 N -0.42 -5.92 11.34 -7.32 -0.08 -6.00 16 15 C -0.06 -0.87 7.13 -82.62 -0.59 -1.46 16 16 C 0.31 4.35 8.19 -156.39 -1.28 3.07 16 17 N -0.32 -4.23 10.68 32.10 0.34 -3.89 16 18 N 0.02 0.20 13.42 60.35 0.81 1.01 16 19 N -0.30 -2.64 8.44 60.35 0.51 -2.13 16 20 H 0.47 1.80 8.96 -331.92 -2.98 -1.17 16 21 N -0.27 -3.44 12.92 32.11 0.41 -3.02 16 22 C 0.00 -0.08 3.50 -27.88 -0.10 -0.18 16 23 C -0.52 -13.75 8.96 -34.44 -0.31 -14.06 16 24 H 0.08 2.19 7.30 -52.49 -0.38 1.81 16 25 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 26 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 27 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 31 H 0.08 1.48 6.95 -51.93 -0.36 1.12 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.11 1.46 8.00 -52.49 -0.42 1.04 16 35 H 0.42 5.85 6.99 -182.59 -1.28 4.57 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 46 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 400.88 15.07 6.04 6.04 Total: -1.00 -32.79 400.88 -7.53 -40.32 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -10.42 Total: -1.28 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -1.86 Total: -6.31 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 3.33 Total: -52.31 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: 0.05 Total: -2.82 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.79 -7.53 -40.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.114 kcal (2) G-P(sol) polarization free energy of solvation -32.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds