Wall clock time and date at job start Wed Apr 1 2020 04:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47538 * 2 1 4 4 C 1.50702 * 109.47135 * 240.00260 * 2 1 3 5 5 N 1.28028 * 119.99745 * 119.72301 * 4 2 1 6 6 N 1.40105 * 119.99978 * 180.27942 * 5 4 2 7 7 C 1.38678 * 119.99994 * 180.02562 * 6 5 4 8 8 O 1.34763 * 126.59445 * 359.67647 * 7 6 5 9 9 C 1.34250 * 108.08741 * 179.89867 * 8 7 6 10 10 C 1.50705 * 125.34586 * 180.14464 * 9 8 7 11 11 C 1.53000 * 109.47179 * 240.26930 * 10 9 8 12 12 C 1.52997 * 109.47396 * 0.27359 * 10 9 8 13 13 C 1.52998 * 109.46605 * 120.27289 * 10 9 8 14 14 N 1.30024 * 109.30252 * 0.38277 * 9 8 7 15 15 C 1.35807 * 108.65042 * 359.76535 * 14 9 8 16 16 C 1.48199 * 126.42942 * 180.02562 * 15 14 9 17 17 N 1.33765 * 126.32687 * 179.66353 * 16 15 14 18 18 N 1.28568 * 109.84179 * 179.85525 * 17 16 15 19 19 N 1.28907 * 109.75205 * 0.41048 * 18 17 16 20 20 H 0.96998 * 126.42226 * 179.74248 * 19 18 17 21 21 N 1.32103 * 126.32103 * 359.97223 * 16 15 14 22 22 C 1.52995 * 109.47329 * 120.00599 * 2 1 3 23 23 C 1.50709 * 109.46758 * 294.99974 * 22 2 1 24 24 H 1.07991 * 119.99974 * 359.97438 * 23 22 2 25 25 C 1.37876 * 119.99611 * 180.02562 * 23 22 2 26 26 N 1.31518 * 119.99527 * 179.97438 * 25 23 22 27 27 Si 1.86799 * 120.00398 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.47262 * 89.99943 * 27 25 23 29 29 H 1.48493 * 109.47391 * 209.99854 * 27 25 23 30 30 H 1.48504 * 109.47117 * 330.00200 * 27 25 23 31 31 H 1.08994 * 109.46996 * 299.99741 * 1 2 3 32 32 H 1.09001 * 109.47339 * 59.99584 * 1 2 3 33 33 H 1.08996 * 109.47277 * 179.97438 * 1 2 3 34 34 H 1.08002 * 120.00299 * 300.00451 * 4 2 1 35 35 H 0.97000 * 119.99515 * 359.97438 * 6 5 4 36 36 H 1.08996 * 109.46904 * 60.00600 * 11 10 9 37 37 H 1.09000 * 109.47183 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.47364 * 300.00390 * 11 10 9 39 39 H 1.09000 * 109.47031 * 59.99483 * 12 10 9 40 40 H 1.09000 * 109.47191 * 179.97438 * 12 10 9 41 41 H 1.08996 * 109.47233 * 299.99734 * 12 10 9 42 42 H 1.09000 * 109.47689 * 59.99761 * 13 10 9 43 43 H 1.09004 * 109.47506 * 179.97438 * 13 10 9 44 44 H 1.09002 * 109.47872 * 299.99620 * 13 10 9 45 45 H 1.08998 * 109.47546 * 54.99854 * 22 2 1 46 46 H 1.09001 * 109.47447 * 175.00384 * 22 2 1 47 47 H 0.97008 * 119.99269 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.7640 -0.0865 -2.0759 6 7 3.2262 -0.7452 -3.2228 7 6 4.0192 -0.0697 -4.1382 8 8 4.4186 1.2151 -4.0612 9 6 5.1720 1.4828 -5.1396 10 6 5.8218 2.8085 -5.4420 11 6 5.2913 3.3447 -6.7731 12 6 5.4960 3.8026 -4.3255 13 6 7.3378 2.6240 -5.5342 14 7 5.2488 0.4200 -5.8847 15 6 4.5403 -0.5767 -5.2941 16 6 4.3659 -1.9560 -5.8073 17 7 3.6726 -2.9381 -5.2205 18 7 3.7282 -4.0018 -5.9405 19 7 4.4415 -3.7801 -6.9911 20 1 4.6438 -4.4164 -7.6947 21 7 4.8711 -2.4444 -6.9259 22 6 2.0400 -0.7213 1.2491 23 6 1.6413 0.0569 2.4766 24 1 1.0807 0.9744 2.3757 25 6 1.9933 -0.4019 3.7282 26 7 1.6458 0.2775 4.7993 27 14 2.9637 -1.9885 3.9026 28 1 4.4172 -1.6851 3.8778 29 1 2.6164 -2.6422 5.1899 30 1 2.6290 -2.8996 2.7787 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.7714 -1.7443 -1.4016 35 1 2.9921 -1.6740 -3.3761 36 1 4.2113 3.4761 -6.7074 37 1 5.7616 4.3033 -6.9920 38 1 5.5235 2.6364 -7.5685 39 1 5.8739 3.4206 -3.3772 40 1 5.9664 4.7613 -4.5440 41 1 4.4160 3.9340 -4.2598 42 1 7.5700 1.9158 -6.3296 43 1 7.8079 3.5828 -5.7533 44 1 7.7159 2.2421 -4.5859 45 1 1.6055 -1.7199 1.2950 46 1 3.1264 -0.7995 1.2055 47 1 1.8931 -0.0456 5.6799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589787030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:12 Heat of formation + Delta-G solvation = 146.970345 kcal Electronic energy + Delta-G solvation = -29769.192683 eV Core-core repulsion = 25605.471424 eV Total energy + Delta-G solvation = -4163.721260 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.62435 -44.25628 -39.18440 -37.96596 -36.86532 -36.39765 -34.71505 -34.39830 -33.88079 -32.90898 -29.66342 -28.96550 -28.20313 -28.17069 -26.08568 -25.83134 -25.06696 -24.06038 -22.81510 -22.56385 -21.04246 -20.66659 -19.66322 -19.05915 -18.98754 -18.23028 -18.14097 -17.56586 -17.49277 -16.27396 -16.15645 -15.37997 -15.34081 -15.14969 -15.00963 -14.91771 -14.67510 -14.50741 -14.37476 -13.68606 -13.47068 -13.32141 -13.12500 -13.07305 -12.94967 -12.86871 -12.58112 -12.53270 -12.44449 -12.22675 -12.14353 -12.09005 -12.03482 -11.87474 -11.83511 -11.73522 -11.65799 -11.57066 -11.40269 -11.06684 -10.91363 -10.70217 -8.77861 -8.22408 -6.24808 -0.42468 0.09148 0.61138 0.73376 1.07602 1.13824 1.40074 1.41356 1.51675 1.75383 1.81007 2.22196 2.40486 2.78161 3.13558 3.26540 3.60116 3.71693 3.85005 3.93352 3.98624 4.05096 4.20043 4.24978 4.37407 4.38863 4.48420 4.75672 4.78169 4.78399 4.87745 4.88562 4.98522 4.98640 4.99726 5.09486 5.11492 5.23723 5.30625 5.35858 5.38671 5.41118 5.49587 5.55641 5.60276 5.67928 5.71856 6.34913 6.40810 6.82564 6.86114 7.00447 7.38497 8.93795 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.002722 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.025308 B =10284.754322 C =12290.153258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.024 4.024 3 H 0.067 0.933 4 C 0.116 3.884 5 N -0.287 5.287 6 N -0.536 5.536 7 C 0.337 3.663 8 O -0.204 6.204 9 C 0.192 3.808 10 C 0.037 3.963 11 C -0.135 4.135 12 C -0.146 4.146 13 C -0.136 4.136 14 N -0.433 5.433 15 C -0.058 4.058 16 C 0.295 3.705 17 N -0.335 5.335 18 N 0.021 4.979 19 N -0.266 5.266 20 H 0.491 0.509 21 N -0.284 5.284 22 C -0.001 4.001 23 C -0.515 4.515 24 H 0.044 0.956 25 C 0.006 3.994 26 N -0.951 5.951 27 Si 0.940 3.060 28 H -0.276 1.276 29 H -0.287 1.287 30 H -0.240 1.240 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.139 0.861 35 H 0.426 0.574 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.100 0.900 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.101 0.899 44 H 0.050 0.950 45 H 0.037 0.963 46 H 0.012 0.988 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.264 -1.944 -28.418 29.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.045 4.045 3 H 0.085 0.915 4 C -0.098 4.098 5 N -0.089 5.089 6 N -0.268 5.268 7 C 0.173 3.827 8 O -0.090 6.090 9 C -0.020 4.020 10 C 0.035 3.965 11 C -0.192 4.192 12 C -0.204 4.204 13 C -0.193 4.193 14 N -0.160 5.160 15 C -0.184 4.184 16 C 0.014 3.986 17 N -0.214 5.214 18 N 0.025 4.975 19 N -0.119 5.119 20 H 0.351 0.649 21 N -0.128 5.128 22 C -0.040 4.040 23 C -0.554 4.554 24 H 0.062 0.938 25 C -0.190 4.190 26 N -0.592 5.592 27 Si 0.764 3.236 28 H -0.202 1.202 29 H -0.213 1.213 30 H -0.163 1.163 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.156 0.844 35 H 0.274 0.726 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.119 0.881 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.119 0.881 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.030 0.970 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.893 -1.648 -29.111 30.484 hybrid contribution -0.255 -1.814 1.036 2.104 sum 8.638 -3.462 -28.075 29.577 Atomic orbital electron populations 1.21620 0.92326 1.02793 1.01534 1.19933 0.97074 0.98827 0.88662 0.91501 1.26545 0.91027 0.99260 0.92953 1.74330 1.13353 1.25763 0.95492 1.44784 1.51077 1.12659 1.18269 1.18818 0.92152 0.82231 0.89467 1.84497 1.55281 1.24740 1.44458 1.26705 0.95402 0.98628 0.81289 1.19421 0.95556 0.83022 0.98476 1.21911 1.01283 1.02550 0.93471 1.21932 1.02436 0.99375 0.96655 1.21920 0.90772 1.04269 1.02386 1.70387 1.18858 0.97937 1.28768 1.17014 1.13634 0.91802 0.95964 1.21769 0.94160 0.92775 0.89929 1.75204 1.23696 0.96208 1.26252 1.78219 1.07060 1.18187 0.94055 1.51021 1.32642 1.09527 1.18722 0.64936 1.79071 1.22816 0.91495 1.19455 1.19544 0.95888 0.96615 0.91949 1.21354 1.34498 1.08831 0.90683 0.93807 1.25884 0.96914 1.00589 0.95627 1.70058 1.49005 1.41452 0.98724 0.85818 0.78952 0.80521 0.78324 1.20189 1.21336 1.16296 0.92752 0.92081 0.91250 0.84412 0.72586 0.92782 0.88083 0.91913 0.92933 0.88098 0.92608 0.91890 0.88059 0.93039 0.94515 0.96985 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.98 8.99 71.98 0.65 -3.34 16 2 C -0.02 -0.85 2.75 -11.54 -0.03 -0.88 16 3 H 0.07 2.63 8.11 -2.39 -0.02 2.62 16 4 C 0.12 3.52 9.66 88.66 0.86 4.37 16 5 N -0.29 -9.39 11.28 -50.45 -0.57 -9.96 16 6 N -0.54 -16.05 6.42 -165.77 -1.06 -17.11 16 7 C 0.34 10.37 8.15 83.21 0.68 11.05 16 8 O -0.20 -6.21 10.11 -6.53 -0.07 -6.28 16 9 C 0.19 4.93 6.45 88.38 0.57 5.50 16 10 C 0.04 0.64 0.99 -52.93 -0.05 0.58 16 11 C -0.13 -1.84 8.46 71.98 0.61 -1.23 16 12 C -0.15 -2.36 8.01 71.98 0.58 -1.78 16 13 C -0.14 -1.95 8.45 71.98 0.61 -1.34 16 14 N -0.43 -12.18 11.34 -291.82 -3.31 -15.49 16 15 C -0.06 -1.70 7.13 40.78 0.29 -1.41 16 16 C 0.29 8.02 8.19 137.29 1.12 9.14 16 17 N -0.33 -8.48 10.68 -52.36 -0.56 -9.04 16 18 N 0.02 0.42 13.42 37.02 0.50 0.92 16 19 N -0.27 -4.13 8.44 37.02 0.31 -3.82 16 20 H 0.49 2.47 8.96 -340.35 -3.05 -0.58 16 21 N -0.28 -6.70 12.92 -52.32 -0.68 -7.38 16 22 C 0.00 -0.06 3.50 29.85 0.10 0.04 16 23 C -0.52 -27.98 8.96 25.60 0.23 -27.75 16 24 H 0.04 2.60 7.30 -2.92 -0.02 2.58 16 25 C 0.01 0.36 5.47 84.65 0.46 0.83 16 26 N -0.95 -58.43 13.96 21.45 0.30 -58.13 16 27 Si 0.94 43.04 27.47 68.60 1.88 44.93 16 28 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 29 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 30 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 31 H 0.05 2.02 6.95 -2.39 -0.02 2.01 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.14 3.33 8.00 -2.91 -0.02 3.30 16 35 H 0.43 11.45 6.99 -213.32 -1.49 9.95 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.04 1.50 7.20 -2.39 -0.02 1.48 16 46 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 47 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 Total: -1.00 -72.79 400.88 -0.16 -72.95 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -3.58 Total: 14.61 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 6.67 Total: -6.21 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -5.07 Total: -120.00 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.07 Total: -6.28 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.88 Total: 44.93 kcal Total: -72.79 -0.16 -72.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.920 kcal (2) G-P(sol) polarization free energy of solvation -72.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds