Wall clock time and date at job start Wed Apr 1 2020 04:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 120.00572 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00110 * 4 2 1 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.36935 * 120.00627 * 179.97438 * 8 7 6 10 10 H 1.08012 * 119.99691 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00809 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99595 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00541 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47128 * 89.99754 * 13 11 9 15 15 H 1.48501 * 109.47310 * 209.99768 * 13 11 9 16 16 H 1.48501 * 109.46818 * 329.99523 * 13 11 9 17 17 N 1.46501 * 109.47013 * 240.00594 * 2 1 3 18 18 C 1.34781 * 120.00231 * 84.99743 * 17 2 1 19 19 O 1.21708 * 119.99671 * 0.02562 * 18 17 2 20 20 C 1.46606 * 119.99965 * 179.97438 * 18 17 2 21 21 C 1.38029 * 126.00583 * 179.68601 * 20 18 17 22 22 C 1.39400 * 107.42635 * 179.87869 * 21 20 18 23 23 C 1.37754 * 107.65208 * 0.38734 * 22 21 20 24 24 C 1.47915 * 125.81747 * 179.77607 * 23 22 21 25 25 N 1.34208 * 126.70136 * 179.66240 * 24 23 22 26 26 N 1.28990 * 107.24681 * 179.89811 * 25 24 23 27 27 N 1.28718 * 108.99909 * 0.37643 * 26 25 24 28 28 H 0.96991 * 125.31605 * 179.79434 * 27 26 25 29 29 N 1.28872 * 109.36440 * 359.76143 * 27 26 25 30 30 N 1.36388 * 108.36261 * 359.76119 * 23 22 21 31 31 H 0.97000 * 125.71277 * 179.97438 * 30 23 22 32 32 H 1.08992 * 109.47133 * 60.00019 * 1 2 3 33 33 H 1.09001 * 109.46843 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46646 * 299.99399 * 1 2 3 35 35 H 1.08996 * 109.47452 * 65.00111 * 4 2 1 36 36 H 1.09001 * 109.46997 * 304.99684 * 4 2 1 37 37 H 1.09001 * 109.47502 * 60.00153 * 5 4 2 38 38 H 1.09001 * 109.47289 * 299.99950 * 5 4 2 39 39 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 40 40 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 41 41 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 42 42 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 43 43 H 0.97006 * 119.99755 * 359.97438 * 8 7 6 44 44 H 0.97000 * 120.00324 * 180.02562 * 12 11 9 45 45 H 0.97003 * 119.99667 * 265.00116 * 17 2 1 46 46 H 1.07997 * 126.29026 * 0.02917 * 21 20 18 47 47 H 1.08000 * 126.17171 * 180.14798 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 6 4.0749 -1.3342 2.5631 7 6 5.5997 -1.2256 2.6278 8 7 6.0880 -1.9152 3.8245 9 6 7.4300 -1.9514 4.0943 10 1 8.1286 -1.4718 3.4246 11 6 7.8928 -2.6053 5.2279 12 7 7.0415 -3.1902 6.0438 13 14 9.7234 -2.6540 5.5963 14 1 10.0928 -1.4793 6.4262 15 1 10.0471 -3.9020 6.3331 16 1 10.4857 -2.6196 4.3223 17 7 2.0183 -0.6905 -1.1963 18 6 2.1470 -0.0181 -2.3572 19 8 1.8580 1.1629 -2.4116 20 6 2.6362 -0.7090 -3.5542 21 6 2.8092 -0.1458 -4.8024 22 6 3.2916 -1.1439 -5.6475 23 6 3.3981 -2.3016 -4.9085 24 6 3.8666 -3.6107 -5.4131 25 7 3.9832 -4.7469 -4.7084 26 7 4.4214 -5.6536 -5.5145 27 7 4.5889 -5.1329 -6.6797 28 1 4.9134 -5.6041 -7.4629 29 7 4.2575 -3.8881 -6.6431 30 7 2.9980 -2.0349 -3.6322 31 1 2.9724 -2.6728 -2.9019 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3632 0.5137 0.8900 35 1 1.7518 -1.7716 1.2054 36 1 1.6055 -0.2619 2.1369 37 1 3.8533 0.4369 1.3573 38 1 3.9995 -1.0727 0.4257 39 1 3.6403 -0.8743 3.4506 40 1 3.7866 -2.3844 2.5197 41 1 6.0347 -1.6851 1.7403 42 1 5.8876 -0.1752 2.6713 43 1 5.4606 -2.3463 4.4258 44 1 7.3648 -3.6469 6.8362 45 1 2.2490 -1.6317 -1.1527 46 1 2.6100 0.8803 -5.0739 47 1 3.5342 -1.0310 -6.6939 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589808351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:07 Heat of formation + Delta-G solvation = 123.838221 kcal Electronic energy + Delta-G solvation = -28817.580710 eV Core-core repulsion = 24652.856366 eV Total energy + Delta-G solvation = -4164.724344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.93426 -41.69878 -39.63786 -37.00360 -35.29322 -34.84414 -33.89834 -33.33067 -31.99605 -31.33767 -30.40589 -29.39294 -27.46525 -25.27997 -25.05388 -24.20628 -22.90904 -21.97241 -21.24175 -20.76619 -20.61736 -20.39270 -19.98276 -18.84657 -17.64392 -17.00307 -16.74319 -16.23280 -15.57122 -15.06969 -14.83075 -14.72092 -14.52348 -14.32419 -14.28269 -13.90354 -13.51259 -13.34830 -13.23074 -13.07927 -12.93957 -12.91107 -12.55653 -12.37799 -11.89272 -11.79053 -11.66499 -11.51178 -11.42195 -11.29430 -11.01335 -10.81056 -10.72129 -10.43965 -10.38317 -10.29779 -9.98667 -9.66513 -9.52643 -9.38322 -8.84695 -8.53765 -6.89196 -5.74352 -3.02716 0.35748 0.76953 1.58730 1.65147 2.39748 2.53656 2.81294 3.06096 3.23429 3.45063 3.49842 3.51780 3.77664 4.38573 4.54641 4.65144 4.68762 4.82637 4.84444 4.90363 4.94178 5.01110 5.22858 5.36175 5.42293 5.53410 5.54997 5.59345 5.65191 5.71905 5.76260 5.85955 5.87399 5.93453 6.07738 6.11176 6.17423 6.29542 6.31592 6.37632 6.38517 6.46248 6.73348 6.90025 6.93882 7.17661 7.62649 7.72062 7.85680 8.45140 9.55808 10.14974 10.49542 11.48804 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.007392 B = 0.002219 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3786.873530 B =12614.895692 C =15480.802939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.093 0.907 4 C -0.128 4.128 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.721 5.721 18 C 0.590 3.410 19 O -0.523 6.523 20 C -0.017 4.017 21 C -0.110 4.110 22 C -0.142 4.142 23 C 0.107 3.893 24 C 0.241 3.759 25 N -0.274 5.274 26 N -0.040 5.040 27 N -0.223 5.223 28 H 0.478 0.522 29 N -0.279 5.279 30 N -0.515 5.515 31 H 0.425 0.575 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.015 0.985 42 H 0.017 0.983 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.395 0.605 46 H 0.159 0.841 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.201 0.303 -28.234 31.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.111 0.889 4 C -0.166 4.166 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.372 5.372 18 C 0.376 3.624 19 O -0.399 6.399 20 C -0.134 4.134 21 C -0.136 4.136 22 C -0.170 4.170 23 C -0.012 4.012 24 C -0.039 4.039 25 N -0.148 5.148 26 N -0.035 5.035 27 N -0.070 5.070 28 H 0.333 0.667 29 N -0.131 5.131 30 N -0.112 5.112 31 H 0.264 0.736 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.229 0.771 46 H 0.177 0.823 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.098 0.446 -28.030 31.379 hybrid contribution 1.134 -1.045 0.309 1.573 sum -12.964 -0.599 -27.721 30.609 Atomic orbital electron populations 1.22184 0.95112 1.02184 1.02715 1.21113 0.93901 0.97834 0.83353 0.88886 1.21958 0.96931 1.00956 0.96737 1.21529 0.93883 1.01240 0.98616 1.21726 0.97278 1.00255 0.97088 1.20646 0.90992 0.95350 0.90542 1.42387 1.05341 1.65036 1.25119 1.19252 0.83927 1.28350 1.05413 0.91255 1.24748 0.97739 1.00969 0.97731 1.69663 1.32776 1.40869 1.15091 0.86179 0.85086 0.77030 0.77866 1.21700 1.21752 1.20772 1.46047 1.67441 1.13804 1.09920 1.16956 0.77643 0.86265 0.81531 1.90868 1.50254 1.14470 1.84261 1.20646 1.12136 0.83405 0.97203 1.21273 1.01904 1.00201 0.90195 1.21150 1.05372 0.90139 1.00294 1.16856 1.09396 0.89505 0.85447 1.22465 1.01142 0.93678 0.86663 1.76205 1.16600 0.97526 1.24463 1.78935 1.13008 1.21842 0.89723 1.47769 1.41727 1.05227 1.12271 0.66670 1.74989 1.18692 0.98120 1.21313 1.41888 1.49519 1.09928 1.09819 0.73625 0.92096 0.92476 0.91282 0.91325 0.89931 0.91824 0.92302 0.91983 0.92136 0.96688 0.96552 0.78348 0.93545 0.77078 0.82342 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.48 37.16 0.35 -0.99 16 2 C 0.14 1.29 2.57 -67.93 -0.17 1.12 16 3 H 0.09 1.01 7.58 -51.93 -0.39 0.61 16 4 C -0.13 -1.18 4.75 -26.73 -0.13 -1.31 16 5 C -0.11 -1.37 5.10 -26.73 -0.14 -1.51 16 6 C -0.13 -1.98 5.33 -26.73 -0.14 -2.12 16 7 C 0.15 3.15 6.26 -4.05 -0.03 3.13 16 8 N -0.73 -19.31 5.60 -59.91 -0.34 -19.65 16 9 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 10 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 12 N -0.93 -28.86 13.06 55.49 0.72 -28.14 16 13 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 N -0.72 -6.27 4.53 -55.13 -0.25 -6.52 16 18 C 0.59 6.31 7.75 -12.88 -0.10 6.21 16 19 O -0.52 -7.28 16.54 5.18 0.09 -7.19 16 20 C -0.02 -0.16 7.04 -81.95 -0.58 -0.74 16 21 C -0.11 -0.97 10.60 -39.23 -0.42 -1.38 16 22 C -0.14 -1.13 10.79 -39.33 -0.42 -1.55 16 23 C 0.11 0.94 7.12 -82.05 -0.58 0.35 16 24 C 0.24 2.19 8.21 -156.23 -1.28 0.91 16 25 N -0.27 -2.75 12.54 32.09 0.40 -2.35 16 26 N -0.04 -0.34 13.46 60.35 0.81 0.48 16 27 N -0.22 -1.19 7.90 60.35 0.48 -0.71 16 28 H 0.48 0.21 8.96 -340.34 -3.05 -2.84 16 29 N -0.28 -2.10 12.39 32.10 0.40 -1.70 16 30 N -0.51 -4.12 6.03 -5.81 -0.04 -4.16 16 31 H 0.42 2.71 8.17 -40.82 -0.33 2.37 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.38 10.48 7.67 -40.82 -0.31 10.16 16 44 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.40 2.66 7.71 -40.82 -0.31 2.35 16 46 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 47 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 404.93 15.07 6.10 6.10 Total: -1.00 -36.77 404.93 -9.95 -46.72 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -9.43 Total: 4.79 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -3.88 Total: -5.51 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: 2.19 Total: -62.76 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 0.09 Total: -7.19 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.77 -9.95 -46.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589808351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.562 kcal (2) G-P(sol) polarization free energy of solvation -36.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds