Wall clock time and date at job start Wed Apr 1 2020 04:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 120.00572 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00110 * 4 2 1 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.36935 * 120.00627 * 179.97438 * 8 7 6 10 10 H 1.08012 * 119.99691 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00809 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99595 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00541 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47128 * 89.99754 * 13 11 9 15 15 H 1.48501 * 109.47310 * 209.99768 * 13 11 9 16 16 H 1.48501 * 109.46818 * 329.99523 * 13 11 9 17 17 N 1.46501 * 109.47013 * 240.00594 * 2 1 3 18 18 C 1.34781 * 120.00231 * 84.99743 * 17 2 1 19 19 O 1.21708 * 119.99671 * 0.02562 * 18 17 2 20 20 C 1.46606 * 119.99965 * 179.97438 * 18 17 2 21 21 C 1.38029 * 126.00583 * 179.68601 * 20 18 17 22 22 C 1.39400 * 107.42635 * 179.87869 * 21 20 18 23 23 C 1.37754 * 107.65208 * 0.38734 * 22 21 20 24 24 C 1.47915 * 125.81747 * 179.77607 * 23 22 21 25 25 N 1.34208 * 126.70136 * 179.66240 * 24 23 22 26 26 N 1.28990 * 107.24681 * 179.89811 * 25 24 23 27 27 N 1.28718 * 108.99909 * 0.37643 * 26 25 24 28 28 H 0.96991 * 125.31605 * 179.79434 * 27 26 25 29 29 N 1.28872 * 109.36440 * 359.76143 * 27 26 25 30 30 N 1.36388 * 108.36261 * 359.76119 * 23 22 21 31 31 H 0.97000 * 125.71277 * 179.97438 * 30 23 22 32 32 H 1.08992 * 109.47133 * 60.00019 * 1 2 3 33 33 H 1.09001 * 109.46843 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46646 * 299.99399 * 1 2 3 35 35 H 1.08996 * 109.47452 * 65.00111 * 4 2 1 36 36 H 1.09001 * 109.46997 * 304.99684 * 4 2 1 37 37 H 1.09001 * 109.47502 * 60.00153 * 5 4 2 38 38 H 1.09001 * 109.47289 * 299.99950 * 5 4 2 39 39 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 40 40 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 41 41 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 42 42 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 43 43 H 0.97006 * 119.99755 * 359.97438 * 8 7 6 44 44 H 0.97000 * 120.00324 * 180.02562 * 12 11 9 45 45 H 0.97003 * 119.99667 * 265.00116 * 17 2 1 46 46 H 1.07997 * 126.29026 * 0.02917 * 21 20 18 47 47 H 1.08000 * 126.17171 * 180.14798 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 6 4.0749 -1.3342 2.5631 7 6 5.5997 -1.2256 2.6278 8 7 6.0880 -1.9152 3.8245 9 6 7.4300 -1.9514 4.0943 10 1 8.1286 -1.4718 3.4246 11 6 7.8928 -2.6053 5.2279 12 7 7.0415 -3.1902 6.0438 13 14 9.7234 -2.6540 5.5963 14 1 10.0928 -1.4793 6.4262 15 1 10.0471 -3.9020 6.3331 16 1 10.4857 -2.6196 4.3223 17 7 2.0183 -0.6905 -1.1963 18 6 2.1470 -0.0181 -2.3572 19 8 1.8580 1.1629 -2.4116 20 6 2.6362 -0.7090 -3.5542 21 6 2.8092 -0.1458 -4.8024 22 6 3.2916 -1.1439 -5.6475 23 6 3.3981 -2.3016 -4.9085 24 6 3.8666 -3.6107 -5.4131 25 7 3.9832 -4.7469 -4.7084 26 7 4.4214 -5.6536 -5.5145 27 7 4.5889 -5.1329 -6.6797 28 1 4.9134 -5.6041 -7.4629 29 7 4.2575 -3.8881 -6.6431 30 7 2.9980 -2.0349 -3.6322 31 1 2.9724 -2.6728 -2.9019 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3632 0.5137 0.8900 35 1 1.7518 -1.7716 1.2054 36 1 1.6055 -0.2619 2.1369 37 1 3.8533 0.4369 1.3573 38 1 3.9995 -1.0727 0.4257 39 1 3.6403 -0.8743 3.4506 40 1 3.7866 -2.3844 2.5197 41 1 6.0347 -1.6851 1.7403 42 1 5.8876 -0.1752 2.6713 43 1 5.4606 -2.3463 4.4258 44 1 7.3648 -3.6469 6.8362 45 1 2.2490 -1.6317 -1.1527 46 1 2.6100 0.8803 -5.0739 47 1 3.5342 -1.0310 -6.6939 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589808351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:06 Heat of formation + Delta-G solvation = 96.680753 kcal Electronic energy + Delta-G solvation = -28818.758346 eV Core-core repulsion = 24652.856366 eV Total energy + Delta-G solvation = -4165.901980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.53502 -42.37553 -40.43902 -38.03324 -36.84676 -35.45521 -34.84099 -34.49447 -33.16981 -32.25791 -31.72659 -30.09822 -28.82161 -26.10749 -25.78869 -25.62880 -23.96019 -23.17619 -22.07778 -21.97810 -21.42298 -21.06912 -20.59054 -19.52719 -19.13027 -18.23904 -17.53652 -16.97479 -16.69727 -16.40091 -16.17663 -15.51884 -15.43168 -15.35145 -15.21814 -14.97421 -14.95275 -14.58091 -14.17984 -14.02684 -13.94975 -13.74994 -13.25439 -13.17533 -13.02418 -12.90375 -12.84875 -12.51008 -12.46237 -12.30918 -12.29301 -12.16685 -12.05043 -11.89528 -11.82213 -11.52361 -11.40769 -11.22357 -10.95439 -10.21776 -10.14614 -9.20710 -9.03037 -7.98112 -5.27423 -0.27488 0.12806 0.88396 1.19531 1.45239 1.47487 1.56006 1.81756 1.88320 2.08947 2.29240 2.53963 2.61602 3.16044 3.35159 3.57433 3.78567 4.01867 4.04175 4.05389 4.13347 4.19791 4.27505 4.35378 4.38245 4.41705 4.60042 4.64793 4.76402 4.87050 4.90153 4.93141 4.98184 5.01383 5.09116 5.13260 5.26718 5.33907 5.40021 5.44438 5.47129 5.52051 5.54831 5.56195 5.72995 6.12308 6.25006 6.46203 7.01244 7.08025 7.30574 8.07185 8.30686 9.25553 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.007392 B = 0.002219 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3786.873530 B =12614.895692 C =15480.802939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.076 0.924 4 C -0.118 4.118 5 C -0.106 4.106 6 C -0.112 4.112 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.250 4.250 10 H 0.072 0.928 11 C -0.076 4.076 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.285 1.285 15 H -0.292 1.292 16 H -0.270 1.270 17 N -0.711 5.711 18 C 0.590 3.410 19 O -0.561 6.561 20 C -0.029 4.029 21 C -0.115 4.115 22 C -0.138 4.138 23 C 0.102 3.898 24 C 0.230 3.770 25 N -0.300 5.300 26 N -0.052 5.052 27 N -0.194 5.194 28 H 0.497 0.503 29 N -0.276 5.276 30 N -0.508 5.508 31 H 0.431 0.569 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.015 0.985 42 H 0.013 0.987 43 H 0.374 0.626 44 H 0.253 0.747 45 H 0.406 0.594 46 H 0.164 0.836 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.089 -0.165 -29.559 32.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 H 0.094 0.906 4 C -0.155 4.155 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.382 4.382 10 H 0.090 0.910 11 C -0.269 4.269 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.212 1.212 15 H -0.218 1.218 16 H -0.195 1.195 17 N -0.363 5.363 18 C 0.378 3.622 19 O -0.440 6.440 20 C -0.146 4.146 21 C -0.142 4.142 22 C -0.166 4.166 23 C -0.018 4.018 24 C -0.050 4.050 25 N -0.173 5.173 26 N -0.047 5.047 27 N -0.046 5.046 28 H 0.357 0.643 29 N -0.129 5.129 30 N -0.105 5.105 31 H 0.271 0.729 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.206 0.794 44 H 0.061 0.939 45 H 0.242 0.758 46 H 0.181 0.819 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.983 -0.049 -29.383 32.541 hybrid contribution 1.115 -0.921 0.606 1.568 sum -12.868 -0.971 -28.777 31.538 Atomic orbital electron populations 1.22125 0.94052 1.02886 1.02545 1.21047 0.94648 0.96944 0.83290 0.90629 1.21863 0.94619 1.02010 0.97036 1.21436 0.95885 1.00313 0.96760 1.21600 0.93639 1.00936 0.98845 1.20858 0.94354 0.94274 0.88370 1.42627 1.04527 1.65449 1.26559 1.19647 0.85345 1.27791 1.05432 0.90973 1.25611 1.02301 1.01146 0.97804 1.69814 1.34717 1.41934 1.15531 0.85115 0.79805 0.76790 0.77912 1.21221 1.21832 1.19504 1.45988 1.66658 1.14269 1.09358 1.17105 0.77127 0.85849 0.82162 1.90845 1.52151 1.16064 1.84907 1.20497 1.13152 0.83974 0.96977 1.21467 1.01745 1.00712 0.90250 1.21363 1.04705 0.89480 1.01025 1.17019 1.09353 0.89727 0.85697 1.22546 1.01757 0.93669 0.87060 1.76179 1.17660 0.98035 1.25404 1.78878 1.13568 1.21817 0.90470 1.47839 1.39829 1.04620 1.12338 0.64318 1.74960 1.18438 0.98798 1.20698 1.41824 1.49123 1.09558 1.09995 0.72891 0.93507 0.91294 0.90241 0.89836 0.89145 0.92360 0.91892 0.92249 0.91922 0.96676 0.96874 0.79384 0.93859 0.75777 0.81880 0.80859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.48 71.98 0.68 -1.68 16 2 C 0.14 2.47 2.57 44.99 0.12 2.59 16 3 H 0.08 1.60 7.58 -2.39 -0.02 1.59 16 4 C -0.12 -1.94 4.75 30.59 0.15 -1.79 16 5 C -0.11 -2.39 5.10 30.60 0.16 -2.23 16 6 C -0.11 -3.42 5.33 30.60 0.16 -3.26 16 7 C 0.15 6.07 6.26 86.38 0.54 6.61 16 8 N -0.75 -39.54 5.60 -343.46 -1.92 -41.46 16 9 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 10 H 0.07 4.04 7.83 -2.90 -0.02 4.02 16 11 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 12 N -0.97 -60.29 13.06 21.65 0.28 -60.01 16 13 Si 0.98 46.92 29.55 68.60 2.03 48.95 16 14 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 15 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 16 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 17 N -0.71 -11.69 4.53 -446.56 -2.02 -13.71 16 18 C 0.59 12.47 7.75 86.43 0.67 13.14 16 19 O -0.56 -15.82 16.54 -4.38 -0.07 -15.89 16 20 C -0.03 -0.53 7.04 40.36 0.28 -0.24 16 21 C -0.12 -1.97 10.60 22.50 0.24 -1.73 16 22 C -0.14 -2.04 10.79 22.44 0.24 -1.80 16 23 C 0.10 1.67 7.12 40.89 0.29 1.96 16 24 C 0.23 3.92 8.21 137.11 1.13 5.05 16 25 N -0.30 -5.75 12.54 -52.40 -0.66 -6.41 16 26 N -0.05 -0.82 13.46 37.02 0.50 -0.32 16 27 N -0.19 -1.74 7.90 37.02 0.29 -1.45 16 28 H 0.50 -0.57 8.96 -347.52 -3.11 -3.69 16 29 N -0.28 -3.69 12.39 -52.35 -0.65 -4.34 16 30 N -0.51 -7.73 6.03 -172.29 -1.04 -8.77 16 31 H 0.43 5.13 8.17 -92.71 -0.76 4.38 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.38 7.75 -2.39 -0.02 1.36 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.01 0.55 8.14 -2.38 -0.02 0.54 16 43 H 0.37 20.71 7.67 -92.70 -0.71 20.00 16 44 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 45 H 0.41 4.87 7.71 -92.71 -0.71 4.15 16 46 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 47 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -78.64 404.93 -1.55 -80.18 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -4.25 Total: 24.30 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 5.96 Total: -1.07 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -5.22 Total: -136.47 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.07 Total: -15.89 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -78.64 -1.55 -80.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589808351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.866 kcal (2) G-P(sol) polarization free energy of solvation -78.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds