Wall clock time and date at job start Wed Apr 1 2020 05:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00337 * 2 1 4 4 C 1.52992 * 109.47323 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47213 * 65.00252 * 4 3 2 6 6 C 1.42901 * 113.99917 * 180.02562 * 5 4 3 7 7 C 1.53043 * 109.45663 * 209.99751 * 6 5 4 8 8 C 1.53194 * 109.31269 * 178.62717 * 7 6 5 9 9 N 1.46927 * 108.77186 * 54.63327 * 8 7 6 10 10 C 1.34782 * 120.62659 * 126.37506 * 9 8 7 11 11 O 1.21280 * 120.00203 * 359.97438 * 10 9 8 12 12 C 1.50697 * 119.99717 * 179.97438 * 10 9 8 13 13 H 1.09001 * 109.47033 * 299.99237 * 12 10 9 14 14 C 1.50695 * 109.47516 * 59.99459 * 12 10 9 15 15 H 1.08006 * 120.00017 * 25.79532 * 14 12 10 16 16 C 1.37879 * 120.00371 * 205.79350 * 14 12 10 17 17 N 1.31513 * 120.00286 * 187.69421 * 16 14 12 18 18 Si 1.86801 * 119.99519 * 7.69858 * 16 14 12 19 19 H 1.48492 * 109.47113 * 275.40844 * 18 16 14 20 20 H 1.48499 * 109.47262 * 35.41175 * 18 16 14 21 21 H 1.48506 * 109.46836 * 155.40881 * 18 16 14 22 22 C 1.50701 * 109.46985 * 179.97438 * 12 10 9 23 23 C 1.38232 * 120.00306 * 293.79296 * 22 12 10 24 24 C 1.38236 * 119.99966 * 179.80811 * 23 22 12 25 25 C 1.38230 * 119.99907 * 0.39829 * 24 23 22 26 26 C 1.38229 * 120.00440 * 359.86002 * 25 24 23 27 27 C 1.38237 * 119.99621 * 359.94818 * 26 25 24 28 28 C 1.46920 * 118.74125 * 306.64245 * 9 8 7 29 29 C 1.52764 * 109.00798 * 53.31217 * 28 9 8 30 30 H 1.08996 * 109.47136 * 300.00374 * 1 2 3 31 31 H 1.09002 * 109.47090 * 60.00160 * 1 2 3 32 32 H 1.08999 * 109.46831 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46556 * 59.99695 * 3 2 1 34 34 H 1.08999 * 109.46816 * 300.00258 * 3 2 1 35 35 H 1.09002 * 109.47431 * 305.00137 * 4 3 2 36 36 H 1.09001 * 109.46996 * 184.99986 * 4 3 2 37 37 H 1.08995 * 109.45877 * 329.96527 * 6 5 4 38 38 H 1.08992 * 109.49859 * 58.67350 * 7 6 5 39 39 H 1.09004 * 109.49468 * 298.57586 * 7 6 5 40 40 H 1.09000 * 109.58629 * 294.84638 * 8 7 6 41 41 H 1.08993 * 109.70311 * 174.49199 * 8 7 6 42 42 H 0.97000 * 120.00082 * 180.02562 * 17 16 14 43 43 H 1.08003 * 119.99371 * 0.02562 * 23 22 12 44 44 H 1.08006 * 119.99647 * 180.23526 * 24 23 22 45 45 H 1.08010 * 119.99408 * 179.82765 * 25 24 23 46 46 H 1.08005 * 120.00131 * 179.97438 * 26 25 24 47 47 H 1.08007 * 119.99603 * 179.97438 * 27 26 25 48 48 H 1.09004 * 109.58618 * 173.14964 * 28 9 8 49 49 H 1.09004 * 109.59000 * 293.56952 * 28 9 8 50 50 H 1.08997 * 109.56234 * 185.54937 * 29 28 9 51 51 H 1.08996 * 109.35639 * 65.49815 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9659 0.5792 -1.2202 6 6 5.3822 0.4186 -1.3215 7 6 5.8001 0.4961 -2.7918 8 6 7.3224 0.3580 -2.8937 9 7 7.7314 -0.8790 -2.2144 10 6 8.4830 -1.7971 -2.8538 11 8 8.8277 -1.6065 -4.0008 12 6 8.8950 -3.0606 -2.1432 13 1 9.4834 -2.8063 -1.2617 14 6 7.6658 -3.8246 -1.7234 15 1 6.7405 -3.6994 -2.2663 16 6 7.7222 -4.6835 -0.6464 17 7 6.6985 -5.4622 -0.3718 18 14 9.2528 -4.7411 0.4230 19 1 10.2497 -5.6562 -0.1885 20 1 9.8327 -3.3783 0.5311 21 1 8.8927 -5.2347 1.7765 22 6 9.7224 -3.9120 -3.0715 23 6 9.1461 -4.4658 -4.1993 24 6 9.9061 -5.2435 -5.0529 25 6 11.2403 -5.4740 -4.7743 26 6 11.8153 -4.9246 -3.6437 27 6 11.0563 -4.1437 -2.7922 28 6 7.3007 -1.0987 -0.8271 29 6 5.7833 -0.9417 -0.7465 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8508 0.5685 0.8427 36 1 3.9785 2.1765 0.0902 37 1 5.8785 1.2106 -0.7608 38 1 5.4933 1.4560 -3.2071 39 1 5.3234 -0.3108 -3.3484 40 1 7.7998 1.2129 -2.4149 41 1 7.6180 0.3142 -3.9419 42 1 6.7381 -6.0662 0.3862 43 1 8.1030 -4.2880 -4.4154 44 1 9.4568 -5.6731 -5.9361 45 1 11.8333 -6.0839 -5.4398 46 1 12.8576 -5.1051 -3.4258 47 1 11.5054 -3.7147 -1.9086 48 1 7.5798 -2.1044 -0.5127 49 1 7.7763 -0.3650 -0.1762 50 1 5.4646 -1.0051 0.2939 51 1 5.3069 -1.7350 -1.3224 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627748410.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:06 Heat of formation + Delta-G solvation = -100.637063 kcal Electronic energy + Delta-G solvation = -31643.905975 eV Core-core repulsion = 27508.402493 eV Total energy + Delta-G solvation = -4135.503482 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.85424 -38.74276 -38.07983 -37.40194 -35.71168 -33.84489 -31.84561 -31.43548 -30.63518 -30.08327 -29.78711 -27.72069 -26.38261 -24.67130 -23.22647 -23.03516 -22.39717 -21.80404 -21.14602 -20.06885 -18.32185 -17.15708 -17.03692 -16.76485 -16.33570 -16.04864 -15.49364 -15.36703 -15.18017 -14.70034 -14.68155 -14.37139 -14.13898 -13.92841 -13.68295 -13.33983 -13.03639 -12.84321 -12.66147 -12.65247 -12.50223 -12.11679 -12.09625 -11.85875 -11.81691 -11.72607 -11.44861 -11.11779 -11.03388 -10.88563 -10.84152 -10.65317 -10.41857 -10.26677 -10.18593 -9.93402 -9.79506 -9.53350 -9.26001 -8.90417 -8.65080 -8.08966 -8.02601 -7.77421 -6.30309 -4.31110 2.19759 2.26456 3.15054 3.22001 3.27240 3.50906 3.62612 3.67642 3.83236 4.21704 4.65853 4.85195 4.98408 5.00393 5.03294 5.11929 5.19295 5.19772 5.24286 5.33692 5.38626 5.48001 5.56866 5.56990 5.60292 5.63026 5.64528 5.72882 5.81146 5.87740 5.92954 5.97500 6.04265 6.12586 6.31133 6.33365 6.35934 6.44105 6.50045 6.64613 6.77264 6.82454 6.89773 7.03977 7.19610 7.24694 7.29138 7.31321 7.39413 7.64075 7.84333 8.11080 8.24198 8.70708 9.07206 9.25801 10.80018 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013446 B = 0.003120 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.885092 B = 8972.486157 C = 9904.967924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.064 3.936 4 C 0.063 3.937 5 O -0.374 6.374 6 C 0.092 3.908 7 C -0.127 4.127 8 C 0.115 3.885 9 N -0.608 5.608 10 C 0.540 3.460 11 O -0.561 6.561 12 C 0.022 3.978 13 H 0.066 0.934 14 C -0.508 4.508 15 H 0.084 0.916 16 C 0.089 3.911 17 N -0.875 5.875 18 Si 0.855 3.145 19 H -0.264 1.264 20 H -0.262 1.262 21 H -0.284 1.284 22 C -0.029 4.029 23 C -0.069 4.069 24 C -0.130 4.130 25 C -0.143 4.143 26 C -0.130 4.130 27 C -0.136 4.136 28 C 0.100 3.900 29 C -0.146 4.146 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.093 0.907 42 H 0.269 0.731 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.106 0.894 48 H 0.132 0.868 49 H 0.046 0.954 50 H 0.069 0.931 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 12.382 2.071 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.013 4.013 4 C -0.014 4.014 5 O -0.293 6.293 6 C 0.034 3.966 7 C -0.165 4.165 8 C -0.009 4.009 9 N -0.342 5.342 10 C 0.331 3.669 11 O -0.439 6.439 12 C 0.001 3.999 13 H 0.084 0.916 14 C -0.545 4.545 15 H 0.102 0.898 16 C -0.117 4.117 17 N -0.510 5.510 18 Si 0.682 3.318 19 H -0.189 1.189 20 H -0.187 1.187 21 H -0.210 1.210 22 C -0.030 4.030 23 C -0.087 4.087 24 C -0.148 4.148 25 C -0.161 4.161 26 C -0.148 4.148 27 C -0.154 4.154 28 C -0.022 4.022 29 C -0.184 4.184 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.136 0.864 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.125 0.875 48 H 0.150 0.850 49 H 0.064 0.936 50 H 0.087 0.913 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.852 12.095 1.457 12.777 hybrid contribution 0.538 0.148 1.049 1.189 sum -3.313 12.243 2.507 12.928 Atomic orbital electron populations 1.22738 0.81347 1.02916 0.99533 1.88036 1.19324 1.27068 1.95273 1.22552 0.92736 0.85583 1.00414 1.22504 0.93038 0.97110 0.88767 1.87985 1.22453 1.81782 1.37074 1.22160 0.80732 0.96961 0.96711 1.21953 0.96117 1.02900 0.95549 1.21418 0.92932 0.86848 0.99659 1.47953 1.52662 1.19169 1.14405 1.21045 0.75908 0.83907 0.86076 1.90582 1.56594 1.78479 1.18276 1.18531 0.97234 0.89956 0.94195 0.91590 1.20473 0.94545 1.24624 1.14879 0.89757 1.24910 0.95607 0.94092 0.97072 1.69871 1.30496 1.22199 1.28395 0.87137 0.84601 0.79507 0.80599 1.18870 1.18736 1.20990 1.20074 0.92310 0.96181 0.94400 1.20846 0.99529 0.94998 0.93348 1.21034 0.94309 0.99853 0.99605 1.20853 0.95421 1.01840 0.97964 1.20864 0.98934 0.99323 0.95662 1.20957 0.94123 1.00667 0.99670 1.21999 0.93330 1.05395 0.81502 1.22212 0.96814 0.97672 1.01737 0.94403 0.94191 0.89520 0.92207 0.92639 0.92340 0.92192 0.92773 0.90987 0.90499 0.92442 0.88915 0.92071 0.86429 0.87145 0.87375 0.87335 0.87550 0.85016 0.93565 0.91277 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.10 10.67 -40.08 -0.43 -5.53 16 3 C 0.06 0.68 6.32 37.15 0.23 0.91 16 4 C 0.06 0.73 6.13 37.15 0.23 0.95 16 5 O -0.37 -5.59 9.95 -40.08 -0.40 -5.99 16 6 C 0.09 1.32 2.57 -26.69 -0.07 1.25 16 7 C -0.13 -1.84 5.73 -26.61 -0.15 -1.99 16 8 C 0.11 1.78 6.44 -3.71 -0.02 1.76 16 9 N -0.61 -11.38 2.98 -173.03 -0.52 -11.89 16 10 C 0.54 11.83 6.98 -10.98 -0.08 11.75 16 11 O -0.56 -13.36 14.84 5.56 0.08 -13.27 16 12 C 0.02 0.50 1.11 -94.08 -0.10 0.40 16 13 H 0.07 1.47 4.97 -51.93 -0.26 1.21 16 14 C -0.51 -12.66 5.65 -34.44 -0.19 -12.86 16 15 H 0.08 2.35 8.05 -52.48 -0.42 1.92 16 16 C 0.09 2.28 5.22 -17.82 -0.09 2.19 16 17 N -0.87 -24.22 13.96 55.43 0.77 -23.45 16 18 Si 0.86 19.44 26.66 -169.99 -4.53 14.91 16 19 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.26 -5.53 6.36 56.52 0.36 -5.17 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.03 -0.65 3.97 -104.62 -0.42 -1.06 16 23 C -0.07 -1.54 8.32 -39.58 -0.33 -1.87 16 24 C -0.13 -2.52 10.05 -39.59 -0.40 -2.92 16 25 C -0.14 -2.56 10.05 -39.59 -0.40 -2.96 16 26 C -0.13 -2.40 10.05 -39.59 -0.40 -2.80 16 27 C -0.14 -2.82 9.31 -39.58 -0.37 -3.18 16 28 C 0.10 1.76 5.86 -3.93 -0.02 1.74 16 29 C -0.15 -2.45 5.68 -26.83 -0.15 -2.60 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.70 7.84 -51.93 -0.41 0.29 16 36 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 37 H 0.05 0.67 7.79 -51.93 -0.40 0.27 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 1.55 7.00 -51.93 -0.36 1.18 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.12 2.73 7.89 -52.48 -0.41 2.31 16 44 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 45 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 46 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 47 H 0.11 2.04 7.96 -52.48 -0.42 1.62 16 48 H 0.13 2.69 4.23 -51.93 -0.22 2.47 16 49 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.07 1.09 7.84 -51.93 -0.41 0.69 16 51 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 405.61 15.07 6.11 6.11 Total: -1.00 -30.80 405.61 -8.93 -39.73 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -8.41 Total: 9.24 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -1.62 Total: -9.87 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.26 Total: -35.34 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.74 Total: -24.79 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.53 Total: 14.91 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.80 -8.93 -39.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627748410.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.902 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds