Wall clock time and date at job start Wed Apr 1 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00337 * 2 1 4 4 C 1.52992 * 109.47323 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47213 * 65.00252 * 4 3 2 6 6 C 1.42901 * 113.99917 * 180.02562 * 5 4 3 7 7 C 1.53043 * 109.45663 * 209.99751 * 6 5 4 8 8 C 1.53194 * 109.31269 * 178.62717 * 7 6 5 9 9 N 1.46927 * 108.77186 * 54.63327 * 8 7 6 10 10 C 1.34782 * 120.62659 * 126.37506 * 9 8 7 11 11 O 1.21280 * 120.00203 * 359.97438 * 10 9 8 12 12 C 1.50697 * 119.99717 * 179.97438 * 10 9 8 13 13 H 1.09001 * 109.47033 * 299.99237 * 12 10 9 14 14 C 1.50695 * 109.47516 * 59.99459 * 12 10 9 15 15 H 1.08006 * 120.00017 * 25.79532 * 14 12 10 16 16 C 1.37879 * 120.00371 * 205.79350 * 14 12 10 17 17 N 1.31513 * 120.00286 * 187.69421 * 16 14 12 18 18 Si 1.86801 * 119.99519 * 7.69858 * 16 14 12 19 19 H 1.48492 * 109.47113 * 275.40844 * 18 16 14 20 20 H 1.48499 * 109.47262 * 35.41175 * 18 16 14 21 21 H 1.48506 * 109.46836 * 155.40881 * 18 16 14 22 22 C 1.50701 * 109.46985 * 179.97438 * 12 10 9 23 23 C 1.38232 * 120.00306 * 293.79296 * 22 12 10 24 24 C 1.38236 * 119.99966 * 179.80811 * 23 22 12 25 25 C 1.38230 * 119.99907 * 0.39829 * 24 23 22 26 26 C 1.38229 * 120.00440 * 359.86002 * 25 24 23 27 27 C 1.38237 * 119.99621 * 359.94818 * 26 25 24 28 28 C 1.46920 * 118.74125 * 306.64245 * 9 8 7 29 29 C 1.52764 * 109.00798 * 53.31217 * 28 9 8 30 30 H 1.08996 * 109.47136 * 300.00374 * 1 2 3 31 31 H 1.09002 * 109.47090 * 60.00160 * 1 2 3 32 32 H 1.08999 * 109.46831 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46556 * 59.99695 * 3 2 1 34 34 H 1.08999 * 109.46816 * 300.00258 * 3 2 1 35 35 H 1.09002 * 109.47431 * 305.00137 * 4 3 2 36 36 H 1.09001 * 109.46996 * 184.99986 * 4 3 2 37 37 H 1.08995 * 109.45877 * 329.96527 * 6 5 4 38 38 H 1.08992 * 109.49859 * 58.67350 * 7 6 5 39 39 H 1.09004 * 109.49468 * 298.57586 * 7 6 5 40 40 H 1.09000 * 109.58629 * 294.84638 * 8 7 6 41 41 H 1.08993 * 109.70311 * 174.49199 * 8 7 6 42 42 H 0.97000 * 120.00082 * 180.02562 * 17 16 14 43 43 H 1.08003 * 119.99371 * 0.02562 * 23 22 12 44 44 H 1.08006 * 119.99647 * 180.23526 * 24 23 22 45 45 H 1.08010 * 119.99408 * 179.82765 * 25 24 23 46 46 H 1.08005 * 120.00131 * 179.97438 * 26 25 24 47 47 H 1.08007 * 119.99603 * 179.97438 * 27 26 25 48 48 H 1.09004 * 109.58618 * 173.14964 * 28 9 8 49 49 H 1.09004 * 109.59000 * 293.56952 * 28 9 8 50 50 H 1.08997 * 109.56234 * 185.54937 * 29 28 9 51 51 H 1.08996 * 109.35639 * 65.49815 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9659 0.5792 -1.2202 6 6 5.3822 0.4186 -1.3215 7 6 5.8001 0.4961 -2.7918 8 6 7.3224 0.3580 -2.8937 9 7 7.7314 -0.8790 -2.2144 10 6 8.4830 -1.7971 -2.8538 11 8 8.8277 -1.6065 -4.0008 12 6 8.8950 -3.0606 -2.1432 13 1 9.4834 -2.8063 -1.2617 14 6 7.6658 -3.8246 -1.7234 15 1 6.7405 -3.6994 -2.2663 16 6 7.7222 -4.6835 -0.6464 17 7 6.6985 -5.4622 -0.3718 18 14 9.2528 -4.7411 0.4230 19 1 10.2497 -5.6562 -0.1885 20 1 9.8327 -3.3783 0.5311 21 1 8.8927 -5.2347 1.7765 22 6 9.7224 -3.9120 -3.0715 23 6 9.1461 -4.4658 -4.1993 24 6 9.9061 -5.2435 -5.0529 25 6 11.2403 -5.4740 -4.7743 26 6 11.8153 -4.9246 -3.6437 27 6 11.0563 -4.1437 -2.7922 28 6 7.3007 -1.0987 -0.8271 29 6 5.7833 -0.9417 -0.7465 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8508 0.5685 0.8427 36 1 3.9785 2.1765 0.0902 37 1 5.8785 1.2106 -0.7608 38 1 5.4933 1.4560 -3.2071 39 1 5.3234 -0.3108 -3.3484 40 1 7.7998 1.2129 -2.4149 41 1 7.6180 0.3142 -3.9419 42 1 6.7381 -6.0662 0.3862 43 1 8.1030 -4.2880 -4.4154 44 1 9.4568 -5.6731 -5.9361 45 1 11.8333 -6.0839 -5.4398 46 1 12.8576 -5.1051 -3.4258 47 1 11.5054 -3.7147 -1.9086 48 1 7.5798 -2.1044 -0.5127 49 1 7.7763 -0.3650 -0.1762 50 1 5.4646 -1.0051 0.2939 51 1 5.3069 -1.7350 -1.3224 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627748410.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:05 Heat of formation + Delta-G solvation = -119.590928 kcal Electronic energy + Delta-G solvation = -31644.727876 eV Core-core repulsion = 27508.402493 eV Total energy + Delta-G solvation = -4136.325383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.40766 -40.04065 -39.35152 -38.54604 -37.09534 -35.66519 -33.47945 -32.93034 -32.00579 -31.62669 -30.78678 -29.39202 -27.18987 -26.23775 -24.87695 -24.32603 -23.40560 -23.32637 -22.61670 -21.48575 -19.86617 -19.05803 -18.30361 -17.78708 -17.64334 -17.53562 -16.83830 -16.42797 -16.36280 -16.27711 -15.95277 -15.75347 -15.64516 -15.37882 -14.97039 -14.76468 -14.60649 -14.33161 -14.23072 -14.08087 -13.77232 -13.61194 -13.45380 -13.14774 -13.09938 -12.94539 -12.89897 -12.68361 -12.37515 -12.18443 -12.03225 -11.99996 -11.88934 -11.87048 -11.61358 -11.46936 -11.39306 -10.83975 -10.63386 -10.54092 -10.32756 -9.64634 -9.53575 -9.37005 -8.31916 -6.35518 0.64042 0.70541 1.33021 1.39219 1.43381 1.81123 2.25047 2.31371 2.69571 2.90389 2.97230 3.13707 3.71992 3.86652 4.02418 4.09074 4.13990 4.19739 4.20202 4.22362 4.26334 4.32787 4.35780 4.36932 4.38776 4.43815 4.52789 4.56542 4.58493 4.59038 4.66504 4.78347 4.81177 4.83342 4.85018 4.89861 4.90682 5.00234 5.13121 5.17622 5.20251 5.31571 5.38093 5.44302 5.68637 5.72989 5.80377 5.95921 6.21331 6.23384 6.29931 6.38884 6.52181 6.62634 7.23402 7.38746 8.82480 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013446 B = 0.003120 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.885092 B = 8972.486157 C = 9904.967924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.059 3.941 4 C 0.053 3.947 5 O -0.398 6.398 6 C 0.100 3.900 7 C -0.120 4.120 8 C 0.113 3.887 9 N -0.606 5.606 10 C 0.531 3.469 11 O -0.587 6.587 12 C 0.027 3.973 13 H 0.074 0.926 14 C -0.487 4.487 15 H 0.033 0.967 16 C 0.043 3.957 17 N -0.926 5.926 18 Si 0.908 3.092 19 H -0.265 1.265 20 H -0.232 1.232 21 H -0.283 1.283 22 C -0.057 4.057 23 C -0.102 4.102 24 C -0.135 4.135 25 C -0.136 4.136 26 C -0.125 4.125 27 C -0.151 4.151 28 C 0.099 3.901 29 C -0.139 4.139 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.039 0.961 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.269 0.731 43 H 0.085 0.915 44 H 0.132 0.868 45 H 0.150 0.850 46 H 0.149 0.851 47 H 0.122 0.878 48 H 0.101 0.899 49 H 0.088 0.912 50 H 0.077 0.923 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.438 14.590 3.065 14.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.017 4.017 4 C -0.023 4.023 5 O -0.318 6.318 6 C 0.042 3.958 7 C -0.159 4.159 8 C -0.009 4.009 9 N -0.339 5.339 10 C 0.322 3.678 11 O -0.468 6.468 12 C 0.006 3.994 13 H 0.092 0.908 14 C -0.525 4.525 15 H 0.052 0.948 16 C -0.157 4.157 17 N -0.564 5.564 18 Si 0.732 3.268 19 H -0.190 1.190 20 H -0.155 1.155 21 H -0.209 1.209 22 C -0.058 4.058 23 C -0.121 4.121 24 C -0.153 4.153 25 C -0.154 4.154 26 C -0.143 4.143 27 C -0.170 4.170 28 C -0.023 4.023 29 C -0.178 4.178 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.058 0.942 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.150 0.850 45 H 0.168 0.832 46 H 0.167 0.833 47 H 0.140 0.860 48 H 0.119 0.881 49 H 0.106 0.894 50 H 0.095 0.905 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.377 14.348 2.461 14.623 hybrid contribution -0.336 -0.530 0.644 0.899 sum -1.713 13.819 3.105 14.266 Atomic orbital electron populations 1.22885 0.79742 1.03349 1.00991 1.87978 1.21375 1.29143 1.95600 1.22754 0.92056 0.84784 1.02082 1.22827 0.93980 0.98421 0.87053 1.87971 1.22489 1.82419 1.38906 1.22067 0.81224 0.95998 0.96480 1.21893 0.95083 1.03127 0.95772 1.21647 0.93806 0.86414 0.99019 1.48043 1.51360 1.19570 1.14885 1.20983 0.76635 0.84337 0.85863 1.90548 1.58089 1.79070 1.19123 1.18431 0.96081 0.90186 0.94742 0.90786 1.20249 0.93842 1.24487 1.13926 0.94845 1.25566 0.98371 0.93576 0.98224 1.70013 1.33048 1.23835 1.29459 0.86275 0.80974 0.80978 0.78594 1.19009 1.15504 1.20876 1.20135 0.93708 0.97095 0.94884 1.20801 0.98659 0.97504 0.95095 1.21345 0.95266 0.98981 0.99683 1.21337 0.94729 1.01089 0.98225 1.21365 1.00621 0.97520 0.94786 1.21240 0.93398 1.01406 1.00907 1.21990 0.93961 1.04921 0.81411 1.22115 0.96062 0.98095 1.01530 0.92242 0.93336 0.89766 0.89141 0.92169 0.93093 0.88688 0.89024 0.87823 0.94176 0.88466 0.90405 0.92159 0.89668 0.84967 0.83194 0.83319 0.86017 0.88134 0.89372 0.90469 0.94793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.42 -11.34 10.67 -144.35 -1.54 -12.88 16 3 C 0.06 1.16 6.32 71.98 0.45 1.62 16 4 C 0.05 1.13 6.13 71.98 0.44 1.57 16 5 O -0.40 -11.63 9.95 -144.35 -1.44 -13.07 16 6 C 0.10 2.74 2.57 30.62 0.08 2.82 16 7 C -0.12 -3.43 5.73 30.67 0.18 -3.26 16 8 C 0.11 3.41 6.44 86.36 0.56 3.97 16 9 N -0.61 -22.95 2.98 -819.73 -2.44 -25.40 16 10 C 0.53 24.16 6.98 87.66 0.61 24.77 16 11 O -0.59 -29.10 14.84 -3.03 -0.04 -29.15 16 12 C 0.03 1.26 1.11 -13.03 -0.01 1.24 16 13 H 0.07 3.27 4.97 -2.39 -0.01 3.26 16 14 C -0.49 -25.98 5.65 25.60 0.14 -25.83 16 15 H 0.03 2.07 8.05 -2.91 -0.02 2.05 16 16 C 0.04 2.33 5.22 84.66 0.44 2.78 16 17 N -0.93 -54.38 13.96 21.45 0.30 -54.08 16 18 Si 0.91 40.21 26.66 68.60 1.83 42.04 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.23 -9.01 6.36 99.48 0.63 -8.38 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 C -0.06 -2.64 3.97 -19.87 -0.08 -2.72 16 23 C -0.10 -4.77 8.32 22.27 0.19 -4.58 16 24 C -0.13 -5.17 10.05 22.27 0.22 -4.94 16 25 C -0.14 -4.47 10.05 22.27 0.22 -4.24 16 26 C -0.13 -4.20 10.05 22.27 0.22 -3.98 16 27 C -0.15 -6.02 9.31 22.27 0.21 -5.82 16 28 C 0.10 3.49 5.86 86.22 0.50 3.99 16 29 C -0.14 -4.82 5.68 30.53 0.17 -4.65 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 1.14 7.84 -2.39 -0.02 1.13 16 36 H 0.10 1.34 8.09 -2.39 -0.02 1.32 16 37 H 0.09 1.89 7.79 -2.39 -0.02 1.87 16 38 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.08 2.61 7.00 -2.39 -0.02 2.59 16 42 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 43 H 0.08 4.37 7.89 -2.91 -0.02 4.35 16 44 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 45 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 46 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 47 H 0.12 4.35 7.96 -2.91 -0.02 4.32 16 48 H 0.10 4.22 4.23 -2.39 -0.01 4.21 16 49 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 50 H 0.08 2.49 7.84 -2.39 -0.02 2.47 16 51 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -74.02 405.61 3.29 -70.73 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: 0.83 Total: 37.32 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 5.80 Total: -15.52 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.14 Total: -79.48 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -3.02 Total: -55.10 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 1.83 Total: 42.04 kcal Total: -74.02 3.29 -70.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627748410.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.863 kcal (2) G-P(sol) polarization free energy of solvation -74.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds