Wall clock time and date at job start Wed Apr 1 2020 04:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00020 * 2 1 4 4 O 1.20827 * 119.99945 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99772 * 179.97438 * 3 2 1 6 6 N 1.46895 * 109.24935 * 321.55653 * 5 3 2 7 7 C 1.46910 * 110.99938 * 298.84104 * 6 5 3 8 8 C 1.52997 * 109.46829 * 174.48725 * 7 6 5 9 9 O 1.42900 * 109.47484 * 65.00012 * 8 7 6 10 10 C 1.42898 * 114.00305 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47352 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00039 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00232 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99787 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00365 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47231 * 89.99364 * 15 13 11 17 17 H 1.48494 * 109.47338 * 209.99775 * 15 13 11 18 18 H 1.48504 * 109.46676 * 329.99947 * 15 13 11 19 19 C 1.52736 * 109.24937 * 202.09124 * 5 3 2 20 20 C 1.53333 * 108.37755 * 290.80921 * 19 5 3 21 21 C 1.52735 * 108.37100 * 290.07857 * 20 19 5 22 22 H 1.09003 * 109.25445 * 290.78949 * 21 20 19 23 23 C 1.52998 * 109.25470 * 171.31651 * 21 20 19 24 24 C 1.50634 * 110.58441 * 51.06892 * 21 20 19 25 25 C 1.38916 * 117.74315 * 162.51124 * 24 21 20 26 26 C 1.37936 * 120.54573 * 179.80188 * 25 24 21 27 27 C 1.38262 * 119.76953 * 359.96382 * 26 25 24 28 28 C 1.37936 * 119.77402 * 0.10703 * 27 26 25 29 29 C 1.37664 * 122.57345 * 342.45261 * 24 21 20 30 30 H 1.09007 * 109.47035 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47554 * 300.00511 * 1 2 3 32 32 H 1.09002 * 109.47059 * 60.00772 * 1 2 3 33 33 H 1.00898 * 111.00007 * 174.89200 * 6 5 3 34 34 H 1.09000 * 109.46517 * 294.48624 * 7 6 5 35 35 H 1.08991 * 109.47022 * 54.48537 * 7 6 5 36 36 H 1.09004 * 109.47111 * 184.99832 * 8 7 6 37 37 H 1.09000 * 109.47431 * 304.99561 * 8 7 6 38 38 H 1.08997 * 109.47059 * 299.99864 * 10 9 8 39 39 H 1.09005 * 109.47286 * 59.99790 * 10 9 8 40 40 H 0.97005 * 119.99844 * 179.97438 * 14 13 11 41 41 H 1.08997 * 109.68488 * 171.08494 * 19 5 3 42 42 H 1.09003 * 109.68543 * 50.52638 * 19 5 3 43 43 H 1.08995 * 109.69168 * 170.35556 * 20 19 5 44 44 H 1.09000 * 109.68171 * 49.79185 * 20 19 5 45 45 H 1.09006 * 109.46979 * 59.47290 * 23 21 20 46 46 H 1.09000 * 109.47260 * 179.46692 * 23 21 20 47 47 H 1.08993 * 109.47511 * 299.47126 * 23 21 20 48 48 H 1.08002 * 119.72986 * 359.75567 * 25 24 21 49 49 H 1.07998 * 120.11309 * 179.97438 * 26 25 24 50 50 H 1.07998 * 120.11435 * 180.02562 * 27 26 25 51 51 H 1.07996 * 119.72760 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1064 0.2156 0.8633 7 6 3.6457 0.3789 2.2486 8 6 4.1134 -0.8135 3.0855 9 8 5.5405 -0.8132 3.1592 10 6 6.0834 -1.8926 3.9222 11 6 7.5872 -1.7943 3.9324 12 1 8.0792 -0.9883 3.4082 13 6 8.3349 -2.7337 4.6099 14 7 7.7358 -3.7155 5.2479 15 14 10.1989 -2.6123 4.6219 16 1 10.6342 -1.7927 5.7813 17 1 10.7830 -3.9732 4.7306 18 1 10.6614 -1.9741 3.3633 19 6 3.9991 2.6355 0.5428 20 6 3.6142 3.7090 -0.4822 21 6 4.5141 3.5507 -1.7061 22 1 5.5329 3.8346 -1.4422 23 6 4.0095 4.4641 -2.8249 24 6 4.5055 2.1238 -2.1888 25 6 4.9559 1.8750 -3.4792 26 6 4.9767 0.5894 -3.9787 27 6 4.5466 -0.4609 -3.1891 28 6 4.0976 -0.2158 -1.9081 29 6 4.0738 1.0785 -1.4040 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5137 -0.8901 33 1 5.1141 0.1910 0.8179 34 1 4.0593 1.2983 2.6630 35 1 2.5571 0.4301 2.2658 36 1 3.6978 -0.7376 4.0903 37 1 3.7738 -1.7392 2.6208 38 1 5.7086 -1.8396 4.9443 39 1 5.7846 -2.8405 3.4744 40 1 8.2619 -4.3767 5.7243 41 1 5.0783 2.6436 0.6952 42 1 3.4929 2.8321 1.4879 43 1 3.7555 4.6987 -0.0481 44 1 2.5718 3.5809 -0.7740 45 1 4.0234 5.4991 -2.4831 46 1 4.6550 4.3610 -3.6972 47 1 2.9907 4.1832 -3.0917 48 1 5.2919 2.6949 -4.0966 49 1 5.3279 0.4040 -4.9830 50 1 4.5609 -1.4697 -3.5744 51 1 3.7615 -1.0367 -1.2922 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001655106285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:42 Heat of formation + Delta-G solvation = -108.760841 kcal Electronic energy + Delta-G solvation = -31968.251756 eV Core-core repulsion = 27832.396001 eV Total energy + Delta-G solvation = -4135.855755 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.51995 -39.67758 -37.50448 -36.87470 -36.05176 -35.56706 -32.86950 -32.04199 -30.43724 -29.70490 -28.71357 -27.95866 -26.78740 -25.42296 -23.60942 -23.06831 -22.55417 -22.29308 -21.51620 -20.24173 -19.67897 -17.57105 -17.34266 -16.51492 -16.38028 -16.19200 -15.74452 -15.58691 -15.50310 -15.04733 -14.71244 -14.41868 -14.09827 -13.94941 -13.93322 -13.66378 -13.30687 -13.26527 -13.00710 -12.79179 -12.68353 -12.36840 -12.22965 -12.13285 -11.93232 -11.83640 -11.68947 -11.49330 -11.33051 -11.23460 -10.84233 -10.82143 -10.79296 -10.64864 -10.60419 -10.42161 -10.10714 -10.03660 -9.10759 -8.85439 -8.81800 -8.71029 -8.39989 -8.17124 -6.10732 -4.12437 1.15445 1.35955 2.11556 2.66723 3.30196 3.35390 3.40477 3.68965 3.95313 4.34657 4.36167 4.47409 4.60344 4.69211 4.78361 4.90189 4.94229 4.99071 5.02504 5.05885 5.09551 5.22592 5.25903 5.31324 5.35845 5.39347 5.44338 5.49436 5.52964 5.56872 5.63318 5.76752 5.84437 5.88331 5.95998 5.97519 6.03190 6.06408 6.13965 6.14217 6.30123 6.43021 6.47254 6.50368 6.55402 6.89010 6.96339 7.11594 7.40598 7.45298 7.71128 7.79003 8.15341 8.57108 9.00493 9.52427 11.00749 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010865 B = 0.003010 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.558912 B = 9299.851421 C =10244.159510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.334 6.334 3 C 0.485 3.515 4 O -0.507 6.507 5 C 0.174 3.826 6 N -0.660 5.660 7 C 0.061 3.939 8 C 0.067 3.933 9 O -0.398 6.398 10 C 0.198 3.802 11 C -0.514 4.514 12 H 0.065 0.935 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.907 3.093 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.137 4.137 20 C -0.124 4.124 21 C -0.058 4.058 22 H 0.083 0.917 23 C -0.144 4.144 24 C -0.052 4.052 25 C -0.132 4.132 26 C -0.108 4.108 27 C -0.132 4.132 28 C -0.075 4.075 29 C -0.087 4.087 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.369 0.631 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.049 0.951 38 H 0.003 0.997 39 H 0.006 0.994 40 H 0.264 0.736 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.123 0.877 49 H 0.120 0.880 50 H 0.124 0.876 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.647 12.259 -17.255 24.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.249 6.249 3 C 0.327 3.673 4 O -0.394 6.394 5 C 0.081 3.919 6 N -0.295 5.295 7 C -0.068 4.068 8 C -0.011 4.011 9 O -0.318 6.318 10 C 0.124 3.876 11 C -0.552 4.552 12 H 0.084 0.916 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.734 3.266 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.176 4.176 20 C -0.162 4.162 21 C -0.076 4.076 22 H 0.101 0.899 23 C -0.201 4.201 24 C -0.052 4.052 25 C -0.150 4.150 26 C -0.126 4.126 27 C -0.150 4.150 28 C -0.093 4.093 29 C -0.088 4.088 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.191 0.809 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.021 0.979 39 H 0.024 0.976 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.112 0.888 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.141 0.859 49 H 0.138 0.862 50 H 0.142 0.858 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.216 12.041 -17.373 24.930 hybrid contribution 1.136 0.399 0.589 1.341 sum -12.080 12.440 -16.784 24.133 Atomic orbital electron populations 1.23286 0.77160 1.03720 1.02146 1.86669 1.22404 1.32705 1.83072 1.23500 0.91141 0.81378 0.71283 1.90580 1.66646 1.36253 1.45951 1.19429 0.87002 0.92602 0.92889 1.60656 1.17453 1.43393 1.07983 1.22061 0.98974 0.98223 0.87539 1.22214 0.85020 0.96929 0.96909 1.87784 1.16630 1.52505 1.74906 1.20165 0.93901 0.84088 0.89456 1.21044 0.90286 1.11489 1.32401 0.91630 1.24941 0.99389 0.94972 0.95181 1.69966 1.35865 1.14241 1.33670 0.86354 0.84337 0.77312 0.78593 1.20523 1.21081 1.19626 1.22214 1.02337 0.93335 0.99680 1.21886 1.01718 0.98364 0.94223 1.20127 1.00409 0.91167 0.95862 0.89851 1.21886 1.01417 0.98967 0.97799 1.19617 0.97328 0.94525 0.93767 1.21122 1.01581 0.97067 0.95237 1.21145 0.98894 0.92908 0.99687 1.21141 1.00201 0.99191 0.94491 1.21375 0.96289 0.96618 0.95063 1.19008 1.02821 0.93742 0.93220 0.88044 0.92074 0.92228 0.80864 0.93828 0.91112 0.94070 0.93235 0.97875 0.97575 0.92671 0.89826 0.90512 0.91316 0.88806 0.92287 0.92323 0.92490 0.85924 0.86151 0.85841 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.36 16 2 O -0.33 -4.35 10.02 -39.25 -0.39 -4.74 16 3 C 0.48 6.67 5.13 36.01 0.18 6.86 16 4 O -0.51 -7.47 13.49 -18.75 -0.25 -7.73 16 5 C 0.17 2.28 0.49 -134.08 -0.07 2.22 16 6 N -0.66 -9.62 4.96 -102.50 -0.51 -10.13 16 7 C 0.06 0.92 5.28 -3.82 -0.02 0.90 16 8 C 0.07 1.23 6.28 37.16 0.23 1.46 16 9 O -0.40 -9.25 9.94 -35.23 -0.35 -9.60 16 10 C 0.20 5.37 5.69 36.01 0.20 5.57 16 11 C -0.51 -14.97 9.43 -34.44 -0.32 -15.30 16 12 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 15 Si 0.91 21.75 29.54 -169.99 -5.02 16.73 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.14 -1.67 3.83 -26.69 -0.10 -1.77 16 20 C -0.12 -1.37 5.06 -26.69 -0.14 -1.51 16 21 C -0.06 -0.58 2.77 -91.94 -0.25 -0.84 16 22 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 23 C -0.14 -1.20 8.70 37.16 0.32 -0.87 16 24 C -0.05 -0.60 5.43 -104.61 -0.57 -1.17 16 25 C -0.13 -1.37 9.04 -39.44 -0.36 -1.72 16 26 C -0.11 -1.09 10.05 -39.68 -0.40 -1.49 16 27 C -0.13 -1.46 10.05 -39.68 -0.40 -1.86 16 28 C -0.08 -0.96 9.12 -39.44 -0.36 -1.31 16 29 C -0.09 -1.12 4.73 -104.62 -0.50 -1.62 16 30 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.37 5.86 8.40 -39.29 -0.33 5.53 16 34 H 0.04 0.65 6.78 -51.93 -0.35 0.30 16 35 H 0.07 0.99 6.71 -51.93 -0.35 0.64 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 39 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 42 H 0.08 0.96 6.98 -51.93 -0.36 0.60 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.19 5.43 -51.93 -0.28 0.91 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.42 6.38 -51.93 -0.33 0.09 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.12 1.02 6.33 -52.49 -0.33 0.68 16 49 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 50 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 51 H 0.14 1.87 7.62 -52.49 -0.40 1.47 16 LS Contribution 404.19 15.07 6.09 6.09 Total: -1.00 -31.97 404.19 -9.46 -41.43 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -8.20 Total: 3.58 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -1.56 Total: -9.57 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.23 Total: -36.20 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -1.00 Total: -22.06 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.97 -9.46 -41.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655106285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.327 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds