Wall clock time and date at job start Wed Apr 1 2020 04:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00020 * 2 1 4 4 O 1.20827 * 119.99945 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99772 * 179.97438 * 3 2 1 6 6 N 1.46895 * 109.24935 * 321.55653 * 5 3 2 7 7 C 1.46910 * 110.99938 * 298.84104 * 6 5 3 8 8 C 1.52997 * 109.46829 * 174.48725 * 7 6 5 9 9 O 1.42900 * 109.47484 * 65.00012 * 8 7 6 10 10 C 1.42898 * 114.00305 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47352 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00039 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00232 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99787 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00365 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47231 * 89.99364 * 15 13 11 17 17 H 1.48494 * 109.47338 * 209.99775 * 15 13 11 18 18 H 1.48504 * 109.46676 * 329.99947 * 15 13 11 19 19 C 1.52736 * 109.24937 * 202.09124 * 5 3 2 20 20 C 1.53333 * 108.37755 * 290.80921 * 19 5 3 21 21 C 1.52735 * 108.37100 * 290.07857 * 20 19 5 22 22 H 1.09003 * 109.25445 * 290.78949 * 21 20 19 23 23 C 1.52998 * 109.25470 * 171.31651 * 21 20 19 24 24 C 1.50634 * 110.58441 * 51.06892 * 21 20 19 25 25 C 1.38916 * 117.74315 * 162.51124 * 24 21 20 26 26 C 1.37936 * 120.54573 * 179.80188 * 25 24 21 27 27 C 1.38262 * 119.76953 * 359.96382 * 26 25 24 28 28 C 1.37936 * 119.77402 * 0.10703 * 27 26 25 29 29 C 1.37664 * 122.57345 * 342.45261 * 24 21 20 30 30 H 1.09007 * 109.47035 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47554 * 300.00511 * 1 2 3 32 32 H 1.09002 * 109.47059 * 60.00772 * 1 2 3 33 33 H 1.00898 * 111.00007 * 174.89200 * 6 5 3 34 34 H 1.09000 * 109.46517 * 294.48624 * 7 6 5 35 35 H 1.08991 * 109.47022 * 54.48537 * 7 6 5 36 36 H 1.09004 * 109.47111 * 184.99832 * 8 7 6 37 37 H 1.09000 * 109.47431 * 304.99561 * 8 7 6 38 38 H 1.08997 * 109.47059 * 299.99864 * 10 9 8 39 39 H 1.09005 * 109.47286 * 59.99790 * 10 9 8 40 40 H 0.97005 * 119.99844 * 179.97438 * 14 13 11 41 41 H 1.08997 * 109.68488 * 171.08494 * 19 5 3 42 42 H 1.09003 * 109.68543 * 50.52638 * 19 5 3 43 43 H 1.08995 * 109.69168 * 170.35556 * 20 19 5 44 44 H 1.09000 * 109.68171 * 49.79185 * 20 19 5 45 45 H 1.09006 * 109.46979 * 59.47290 * 23 21 20 46 46 H 1.09000 * 109.47260 * 179.46692 * 23 21 20 47 47 H 1.08993 * 109.47511 * 299.47126 * 23 21 20 48 48 H 1.08002 * 119.72986 * 359.75567 * 25 24 21 49 49 H 1.07998 * 120.11309 * 179.97438 * 26 25 24 50 50 H 1.07998 * 120.11435 * 180.02562 * 27 26 25 51 51 H 1.07996 * 119.72760 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1064 0.2156 0.8633 7 6 3.6457 0.3789 2.2486 8 6 4.1134 -0.8135 3.0855 9 8 5.5405 -0.8132 3.1592 10 6 6.0834 -1.8926 3.9222 11 6 7.5872 -1.7943 3.9324 12 1 8.0792 -0.9883 3.4082 13 6 8.3349 -2.7337 4.6099 14 7 7.7358 -3.7155 5.2479 15 14 10.1989 -2.6123 4.6219 16 1 10.6342 -1.7927 5.7813 17 1 10.7830 -3.9732 4.7306 18 1 10.6614 -1.9741 3.3633 19 6 3.9991 2.6355 0.5428 20 6 3.6142 3.7090 -0.4822 21 6 4.5141 3.5507 -1.7061 22 1 5.5329 3.8346 -1.4422 23 6 4.0095 4.4641 -2.8249 24 6 4.5055 2.1238 -2.1888 25 6 4.9559 1.8750 -3.4792 26 6 4.9767 0.5894 -3.9787 27 6 4.5466 -0.4609 -3.1891 28 6 4.0976 -0.2158 -1.9081 29 6 4.0738 1.0785 -1.4040 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5137 -0.8901 33 1 5.1141 0.1910 0.8179 34 1 4.0593 1.2983 2.6630 35 1 2.5571 0.4301 2.2658 36 1 3.6978 -0.7376 4.0903 37 1 3.7738 -1.7392 2.6208 38 1 5.7086 -1.8396 4.9443 39 1 5.7846 -2.8405 3.4744 40 1 8.2619 -4.3767 5.7243 41 1 5.0783 2.6436 0.6952 42 1 3.4929 2.8321 1.4879 43 1 3.7555 4.6987 -0.0481 44 1 2.5718 3.5809 -0.7740 45 1 4.0234 5.4991 -2.4831 46 1 4.6550 4.3610 -3.6972 47 1 2.9907 4.1832 -3.0917 48 1 5.2919 2.6949 -4.0966 49 1 5.3279 0.4040 -4.9830 50 1 4.5609 -1.4697 -3.5744 51 1 3.7615 -1.0367 -1.2922 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001655106285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:41 Heat of formation + Delta-G solvation = -126.806841 kcal Electronic energy + Delta-G solvation = -31969.034290 eV Core-core repulsion = 27832.396001 eV Total energy + Delta-G solvation = -4136.638288 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.51073 -40.60424 -38.93453 -38.04876 -37.26869 -36.53367 -34.93391 -33.28556 -31.31223 -30.64017 -29.99865 -29.07652 -28.47761 -26.45450 -24.55026 -24.47405 -23.96515 -23.47110 -22.74347 -21.20467 -20.61274 -18.70935 -18.61241 -18.20152 -17.58488 -17.39677 -17.09678 -16.68220 -16.54906 -16.34154 -16.27043 -15.80638 -15.29372 -15.12240 -14.87308 -14.69438 -14.55270 -14.30094 -14.14347 -13.87636 -13.67030 -13.57117 -13.41993 -13.24782 -13.00553 -12.91974 -12.79525 -12.73816 -12.61679 -12.60491 -12.41459 -12.23790 -12.13035 -11.90675 -11.78236 -11.53741 -11.30372 -11.26016 -11.07345 -10.85676 -10.21992 -9.72481 -9.56027 -9.54839 -8.30595 -6.42613 0.27644 0.50163 1.06157 1.41136 1.43684 1.55700 1.73048 2.35527 2.76486 2.89678 3.03590 3.17998 3.41584 3.57895 3.70529 3.86194 3.89121 4.05719 4.06463 4.23875 4.24910 4.26874 4.27828 4.29808 4.46914 4.48865 4.52200 4.57574 4.63910 4.66568 4.69967 4.74513 4.76934 4.83851 4.88354 4.94038 5.01901 5.07513 5.13340 5.18066 5.20485 5.24342 5.35051 5.53091 5.55896 5.56879 5.62689 5.66681 5.80498 5.97454 6.11232 6.16301 6.53807 6.67799 6.82687 7.29123 8.81725 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010865 B = 0.003010 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.558912 B = 9299.851421 C =10244.159510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.346 6.346 3 C 0.483 3.517 4 O -0.520 6.520 5 C 0.176 3.824 6 N -0.664 5.664 7 C 0.073 3.927 8 C 0.063 3.937 9 O -0.404 6.404 10 C 0.213 3.787 11 C -0.545 4.545 12 H 0.063 0.937 13 C 0.006 3.994 14 N -0.931 5.931 15 Si 0.982 3.018 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.264 1.264 19 C -0.136 4.136 20 C -0.119 4.119 21 C -0.057 4.057 22 H 0.091 0.909 23 C -0.139 4.139 24 C -0.063 4.063 25 C -0.133 4.133 26 C -0.107 4.107 27 C -0.140 4.140 28 C -0.093 4.093 29 C -0.105 4.105 30 H 0.126 0.874 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.360 0.640 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.047 0.953 38 H -0.015 1.015 39 H -0.015 1.015 40 H 0.270 0.730 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.046 0.954 48 H 0.148 0.852 49 H 0.149 0.851 50 H 0.138 0.862 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.624 13.407 -18.832 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.261 6.261 3 C 0.326 3.674 4 O -0.409 6.409 5 C 0.084 3.916 6 N -0.297 5.297 7 C -0.056 4.056 8 C -0.014 4.014 9 O -0.324 6.324 10 C 0.138 3.862 11 C -0.583 4.583 12 H 0.081 0.919 13 C -0.192 4.192 14 N -0.570 5.570 15 Si 0.805 3.195 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.188 1.188 19 C -0.175 4.175 20 C -0.157 4.157 21 C -0.075 4.075 22 H 0.109 0.891 23 C -0.196 4.196 24 C -0.064 4.064 25 C -0.151 4.151 26 C -0.125 4.125 27 C -0.158 4.158 28 C -0.112 4.112 29 C -0.106 4.106 30 H 0.144 0.856 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.181 0.819 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.002 0.998 39 H 0.003 0.997 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.065 0.935 48 H 0.165 0.835 49 H 0.166 0.834 50 H 0.156 0.844 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.230 13.194 -18.959 26.137 hybrid contribution 0.688 0.010 1.037 1.245 sum -11.543 13.204 -17.922 25.076 Atomic orbital electron populations 1.23563 0.75357 1.05534 1.02455 1.86654 1.24304 1.32410 1.82780 1.23602 0.91382 0.81405 0.70965 1.90569 1.66988 1.36625 1.46725 1.19444 0.86720 0.92374 0.93072 1.60600 1.16727 1.44695 1.07692 1.21918 0.99529 0.96577 0.87527 1.22452 0.82401 0.98440 0.98127 1.87748 1.19585 1.50945 1.74161 1.19778 0.93616 0.84248 0.88595 1.21379 0.91415 1.12115 1.33367 0.91868 1.25946 1.04983 0.94150 0.94159 1.70076 1.38150 1.14863 1.33956 0.85202 0.77385 0.77839 0.79106 1.19382 1.20061 1.18782 1.22202 1.02086 0.93411 0.99811 1.21831 1.00946 0.98484 0.94444 1.20161 1.00556 0.90770 0.95969 0.89121 1.21859 1.01021 0.99077 0.97657 1.19886 0.97201 0.94933 0.94337 1.21448 1.00722 0.98034 0.94862 1.21499 0.97824 0.92459 1.00713 1.21383 0.99903 1.00482 0.93992 1.21355 0.97590 0.96303 0.95920 1.19079 1.04027 0.94337 0.93157 0.85558 0.91830 0.91864 0.81874 0.93562 0.89762 0.93278 0.93517 0.99775 0.99702 0.92109 0.89955 0.91146 0.89962 0.90425 0.91126 0.90808 0.93463 0.83489 0.83358 0.84405 0.85715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.56 113.37 1.20 1.64 16 2 O -0.35 -9.09 10.02 -51.40 -0.52 -9.60 16 3 C 0.48 13.44 5.13 71.24 0.37 13.80 16 4 O -0.52 -15.41 13.49 21.96 0.30 -15.12 16 5 C 0.18 4.70 0.49 1.93 0.00 4.70 16 6 N -0.66 -19.86 4.96 -478.20 -2.37 -22.23 16 7 C 0.07 2.24 5.28 86.30 0.46 2.69 16 8 C 0.06 2.36 6.28 71.98 0.45 2.81 16 9 O -0.40 -19.31 9.94 -148.98 -1.48 -20.79 16 10 C 0.21 11.92 5.69 71.24 0.41 12.33 16 11 C -0.55 -32.28 9.43 25.60 0.24 -32.03 16 12 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 13 C 0.01 0.35 5.46 84.65 0.46 0.81 16 14 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 15 Si 0.98 44.26 29.54 68.60 2.03 46.29 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 17 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 19 C -0.14 -3.33 3.83 30.62 0.12 -3.21 16 20 C -0.12 -2.54 5.06 30.62 0.16 -2.39 16 21 C -0.06 -1.06 2.77 -11.65 -0.03 -1.09 16 22 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 23 C -0.14 -2.01 8.70 71.98 0.63 -1.38 16 24 C -0.06 -1.39 5.43 -19.86 -0.11 -1.50 16 25 C -0.13 -2.46 9.04 22.36 0.20 -2.26 16 26 C -0.11 -1.93 10.05 22.20 0.22 -1.71 16 27 C -0.14 -2.97 10.05 22.20 0.22 -2.75 16 28 C -0.09 -2.40 9.12 22.36 0.20 -2.20 16 29 C -0.11 -2.71 4.73 -19.86 -0.09 -2.81 16 30 H 0.13 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 32 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 33 H 0.36 11.85 8.40 -89.70 -0.75 11.10 16 34 H 0.05 1.39 6.78 -2.39 -0.02 1.37 16 35 H 0.08 2.36 6.71 -2.39 -0.02 2.34 16 36 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 39 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 40 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 41 H 0.08 2.01 8.10 -2.39 -0.02 1.99 16 42 H 0.07 1.77 6.98 -2.39 -0.02 1.76 16 43 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.08 1.95 5.43 -2.39 -0.01 1.94 16 45 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 46 H 0.07 0.83 6.38 -2.39 -0.02 0.82 16 47 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.15 1.93 6.33 -2.91 -0.02 1.91 16 49 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 50 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 51 H 0.12 3.50 7.62 -2.91 -0.02 3.48 16 Total: -1.00 -69.17 404.19 3.51 -65.66 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.18 Total: 26.11 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 5.10 Total: -14.53 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -2.09 Total: -78.01 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -1.70 Total: -45.51 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -69.17 3.51 -65.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655106285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.150 kcal (2) G-P(sol) polarization free energy of solvation -69.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds