Wall clock time and date at job start Wed Apr 1 2020 05:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86807 * 120.00206 * 2 1 4 4 H 1.48498 * 109.47151 * 270.00361 * 3 2 1 5 5 H 1.48502 * 109.46668 * 30.00151 * 3 2 1 6 6 H 1.48492 * 109.47217 * 149.99674 * 3 2 1 7 7 C 1.38948 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00167 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99969 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00130 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99944 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00161 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47430 * 179.97438 * 12 10 9 14 14 C 1.46832 * 111.00186 * 169.99822 * 13 12 10 15 15 C 1.53226 * 109.43194 * 187.84308 * 14 13 12 16 16 C 1.52712 * 109.00787 * 303.22424 * 15 14 13 17 17 C 1.53443 * 113.67316 * 282.33721 * 16 15 14 18 18 N 1.47681 * 85.95888 * 268.80712 * 17 16 15 19 19 C 1.34779 * 134.45080 * 155.74744 * 18 17 16 20 20 O 1.21274 * 120.00028 * 179.97438 * 19 18 17 21 21 C 1.50697 * 119.99899 * 359.97438 * 19 18 17 22 22 H 1.09003 * 115.55335 * 325.57959 * 21 19 18 23 23 C 1.52998 * 117.50078 * 111.25365 * 21 19 18 24 24 C 1.52997 * 117.49878 * 179.91226 * 21 19 18 25 25 C 1.52993 * 138.59067 * 121.61721 * 24 21 19 26 26 C 1.52994 * 138.58731 * 23.40153 * 24 21 19 27 27 C 1.47676 * 91.09652 * 335.72936 * 18 17 16 28 28 C 1.52708 * 112.84989 * 53.66645 * 16 15 14 29 29 C 1.46822 * 111.00040 * 294.55567 * 13 12 10 30 30 H 0.96997 * 119.99623 * 0.02562 * 1 2 3 31 31 H 0.96994 * 120.00395 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47000 * 59.99511 * 12 10 9 33 33 H 1.09007 * 109.47129 * 300.00149 * 12 10 9 34 34 H 1.08997 * 109.47860 * 67.85465 * 14 13 12 35 35 H 1.09000 * 109.49010 * 307.83292 * 14 13 12 36 36 H 1.09000 * 109.54964 * 63.08679 * 15 14 13 37 37 H 1.09007 * 109.54472 * 183.36834 * 15 14 13 38 38 H 1.08996 * 113.79723 * 23.06556 * 17 16 15 39 39 H 1.08999 * 113.79611 * 154.54725 * 17 16 15 40 40 H 1.09005 * 117.49765 * 214.97975 * 23 21 19 41 41 H 1.08997 * 117.49997 * 359.97438 * 23 21 19 42 42 H 1.09006 * 117.49685 * 336.59151 * 25 24 21 43 43 H 1.08997 * 117.50440 * 121.61255 * 25 24 21 44 44 H 1.09001 * 117.49393 * 238.38344 * 26 24 21 45 45 H 1.08993 * 117.50293 * 23.40194 * 26 24 21 46 46 H 1.08999 * 113.79387 * 270.01269 * 27 18 17 47 47 H 1.09004 * 113.78981 * 138.53759 * 27 18 17 48 48 H 1.08996 * 109.54550 * 186.47661 * 28 16 15 49 49 H 1.09000 * 109.62187 * 66.24199 * 28 16 15 50 50 H 1.09007 * 109.47727 * 292.14362 * 29 13 12 51 51 H 1.09003 * 109.48319 * 52.16911 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0026 11 8 3.2102 -3.5578 -0.0022 12 6 1.2439 -4.8629 -0.0032 13 7 2.1984 -5.9795 -0.0050 14 6 1.5144 -7.2569 0.2325 15 6 2.5555 -8.3657 0.4184 16 6 3.4592 -8.4109 -0.8118 17 6 2.8175 -9.1014 -2.0226 18 7 3.4319 -10.3421 -1.5087 19 6 3.1579 -11.6553 -1.6392 20 8 3.8565 -12.4783 -1.0866 21 6 1.9836 -12.1008 -2.4719 22 1 1.1154 -11.4420 -2.4510 23 6 2.2833 -12.8330 -3.7814 24 6 1.7263 -13.6049 -2.5828 25 6 0.6068 -14.6029 -2.2804 26 6 2.0316 -14.8821 -1.7978 27 6 4.4670 -9.5675 -0.7949 28 6 4.0841 -7.0564 -1.1386 29 6 2.9723 -6.0081 -1.2523 30 1 -0.4849 0.8400 -0.0004 31 1 0.3535 -2.3906 -0.0016 32 1 0.6168 -4.9200 -0.8930 33 1 0.6175 -4.9213 0.8870 34 1 0.8799 -7.4937 -0.6215 35 1 0.9014 -7.1798 1.1305 36 1 3.1556 -8.1578 1.3043 37 1 2.0502 -9.3245 0.5352 38 1 1.7278 -9.1077 -1.9988 39 1 3.2218 -8.7745 -2.9806 40 1 1.6122 -12.6560 -4.6220 41 1 3.3299 -12.9920 -4.0410 42 1 -0.1318 -14.3188 -1.5307 43 1 0.2295 -15.2023 -3.1089 44 1 2.5917 -15.6652 -2.3089 45 1 2.2304 -14.7818 -0.7308 46 1 5.3623 -9.3794 -1.3875 47 1 4.6874 -9.9442 0.2040 48 1 4.6221 -7.1216 -2.0843 49 1 4.7747 -6.7709 -0.3451 50 1 2.3143 -6.2650 -2.0825 51 1 3.4142 -5.0274 -1.4286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673016976.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:50 Heat of formation + Delta-G solvation = 12.745443 kcal Electronic energy + Delta-G solvation = -30376.385735 eV Core-core repulsion = 26278.091639 eV Total energy + Delta-G solvation = -4098.294096 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.04282 -40.53704 -39.94228 -38.35157 -37.60025 -35.85330 -33.79846 -33.35592 -33.00869 -31.85631 -29.71809 -27.73929 -27.33189 -25.96137 -24.50120 -24.14005 -23.30870 -22.50455 -20.98205 -20.82756 -19.84020 -19.73693 -19.18140 -18.17511 -17.66163 -16.95990 -16.87924 -16.60076 -16.42609 -16.17578 -15.92028 -15.84833 -15.55867 -15.36213 -15.21559 -14.98373 -14.78919 -14.16414 -13.93855 -13.76957 -13.51939 -13.45481 -13.38203 -13.14544 -12.87600 -12.79851 -12.67746 -12.52785 -12.38676 -12.38343 -12.11791 -12.06337 -11.66497 -11.50647 -11.34739 -11.32147 -11.17855 -11.11413 -10.96013 -10.64493 -10.17291 -9.95050 -9.73454 -9.06869 -8.43276 -5.91161 1.39573 1.41974 1.43360 1.55663 1.69660 2.11070 2.30803 2.69803 2.75135 2.82528 3.23429 3.24272 3.29859 3.45052 3.49972 3.72238 3.80991 3.86762 4.03966 4.05342 4.26790 4.33517 4.34323 4.38268 4.45696 4.51059 4.54814 4.55782 4.59281 4.60264 4.62287 4.71377 4.72317 4.74479 4.76957 4.79801 4.80648 4.93144 4.99116 5.01474 5.06971 5.13376 5.24030 5.24564 5.31509 5.40514 5.44593 5.96103 6.17867 6.36664 6.65317 6.65953 7.09594 7.17525 7.62099 8.18141 8.74111 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028459 B = 0.001786 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.636374 B =15672.453500 C =16033.380780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.990 3.010 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.329 4.329 8 H 0.079 0.921 9 N -0.577 5.577 10 C 0.442 3.558 11 O -0.612 6.612 12 C 0.059 3.941 13 N -0.537 5.537 14 C 0.060 3.940 15 C -0.081 4.081 16 C -0.082 4.082 17 C 0.116 3.884 18 N -0.638 5.638 19 C 0.555 3.445 20 O -0.586 6.586 21 C -0.142 4.142 22 H 0.141 0.859 23 C -0.085 4.085 24 C -0.228 4.228 25 C -0.106 4.106 26 C -0.132 4.132 27 C 0.112 3.888 28 C -0.087 4.087 29 C 0.058 3.942 30 H 0.276 0.724 31 H 0.395 0.605 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.119 0.881 44 H 0.101 0.899 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.060 0.940 50 H 0.041 0.959 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.110 -24.875 -7.833 26.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.459 4.459 8 H 0.097 0.903 9 N -0.214 5.214 10 C 0.230 3.770 11 O -0.498 6.498 12 C -0.072 4.072 13 N -0.263 5.263 14 C -0.067 4.067 15 C -0.119 4.119 16 C -0.083 4.083 17 C -0.005 4.005 18 N -0.372 5.372 19 C 0.346 3.654 20 O -0.466 6.466 21 C -0.163 4.163 22 H 0.159 0.841 23 C -0.122 4.122 24 C -0.229 4.229 25 C -0.142 4.142 26 C -0.168 4.168 27 C -0.010 4.010 28 C -0.125 4.125 29 C -0.070 4.070 30 H 0.086 0.914 31 H 0.229 0.771 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.152 0.848 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.137 0.863 44 H 0.120 0.880 45 H 0.098 0.902 46 H 0.115 0.885 47 H 0.090 0.910 48 H 0.105 0.895 49 H 0.079 0.921 50 H 0.059 0.941 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.795 -25.292 -7.172 26.302 hybrid contribution -0.376 1.108 -0.238 1.194 sum -1.171 -24.185 -7.409 25.321 Atomic orbital electron populations 1.69668 1.06768 1.29128 1.50702 1.25990 0.96510 1.02292 0.96540 0.84961 0.77872 0.77131 0.78580 1.19664 1.19750 1.19902 1.19636 0.92651 0.84034 1.49563 0.90332 1.41949 1.09278 1.04723 1.65495 1.20828 0.88348 0.85933 0.81937 1.90464 1.15647 1.87746 1.55913 1.21686 0.93640 0.88566 1.03275 1.61311 1.25472 1.02365 1.37110 1.22153 0.95384 0.87631 1.01536 1.21233 0.96565 0.97671 0.96454 1.22008 0.96228 0.93698 0.96362 1.23500 1.00395 0.78924 0.97722 1.50073 1.32154 1.03937 1.51050 1.19882 0.85129 0.80259 0.80141 1.90668 1.53152 1.52661 1.50149 1.21928 0.98290 0.94662 1.01423 0.84108 1.22748 1.02108 0.97373 0.90013 1.21471 1.08440 0.89396 1.03580 1.22856 0.90692 0.97704 1.02993 1.22592 0.99355 0.95763 0.99134 1.23311 0.92823 0.87323 0.97546 1.21370 0.97013 0.91745 1.02379 1.22129 0.95583 1.00115 0.89183 0.91436 0.77107 0.91444 0.87569 0.93283 0.89983 0.91561 0.90647 0.88467 0.87664 0.84823 0.89131 0.87878 0.86269 0.88027 0.90167 0.88507 0.90974 0.89453 0.92147 0.94117 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.15 13.05 21.66 0.28 -48.86 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 0.99 42.54 29.55 68.60 2.03 44.56 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.33 -18.38 9.68 84.04 0.81 -17.57 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.58 -28.88 5.29 -306.98 -1.62 -30.50 16 10 C 0.44 20.25 7.43 87.66 0.65 20.90 16 11 O -0.61 -32.50 13.90 -3.06 -0.04 -32.54 16 12 C 0.06 1.93 5.45 85.56 0.47 2.39 16 13 N -0.54 -15.70 4.35 -900.25 -3.92 -19.62 16 14 C 0.06 1.24 5.42 86.39 0.47 1.71 16 15 C -0.08 -1.56 5.22 30.57 0.16 -1.40 16 16 C -0.08 -1.45 0.79 -52.05 -0.04 -1.49 16 17 C 0.12 1.63 7.51 86.30 0.65 2.28 16 18 N -0.64 -12.24 3.46 -843.56 -2.92 -15.16 16 19 C 0.55 12.92 7.84 87.66 0.69 13.61 16 20 O -0.59 -18.64 16.97 -3.01 -0.05 -18.69 16 21 C -0.14 -2.37 5.93 -11.54 -0.07 -2.44 16 22 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 23 C -0.09 -1.15 10.24 30.62 0.31 -0.84 16 24 C -0.23 -3.79 5.06 -52.16 -0.26 -4.06 16 25 C -0.11 -1.27 10.53 30.59 0.32 -0.95 16 26 C -0.13 -2.27 10.16 30.59 0.31 -1.95 16 27 C 0.11 2.11 7.98 86.29 0.69 2.80 16 28 C -0.09 -1.89 5.29 30.57 0.16 -1.73 16 29 C 0.06 1.61 5.06 86.39 0.44 2.04 16 30 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 31 H 0.40 18.82 7.90 -92.71 -0.73 18.08 16 32 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 33 H 0.11 3.06 7.96 -2.38 -0.02 3.04 16 34 H 0.05 0.84 7.68 -2.39 -0.02 0.83 16 35 H 0.08 1.61 7.98 -2.39 -0.02 1.59 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 1.34 8.01 -2.38 -0.02 1.32 16 38 H 0.10 1.09 7.66 -2.39 -0.02 1.08 16 39 H 0.11 1.19 8.02 -2.39 -0.02 1.17 16 40 H 0.13 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.10 1.62 8.09 -2.39 -0.02 1.60 16 47 H 0.07 1.51 8.09 -2.38 -0.02 1.49 16 48 H 0.09 1.56 8.04 -2.39 -0.02 1.54 16 49 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.04 0.96 8.09 -2.38 -0.02 0.94 16 51 H 0.06 2.27 5.74 -2.39 -0.01 2.26 16 Total: -1.00 -73.22 413.12 0.17 -73.05 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: 0.20 Total: 34.73 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 6.22 Total: 13.04 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -8.18 Total: -114.15 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -0.09 Total: -51.23 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -73.22 0.17 -73.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673016976.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.795 kcal (2) G-P(sol) polarization free energy of solvation -73.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds