Wall clock time and date at job start Wed Apr 1 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86806 * 119.99560 * 2 1 4 4 H 1.48502 * 109.47125 * 269.99889 * 3 2 1 5 5 H 1.48495 * 109.47337 * 29.99808 * 3 2 1 6 6 H 1.48507 * 109.46966 * 150.00032 * 3 2 1 7 7 C 1.38942 * 120.00483 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00486 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99987 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00375 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99775 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00191 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.46964 * 179.97438 * 12 10 9 14 14 C 1.46847 * 110.99790 * 189.99832 * 13 12 10 15 15 C 1.53225 * 109.43382 * 172.17256 * 14 13 12 16 16 C 1.52706 * 109.01712 * 56.78283 * 15 14 13 17 17 C 1.53414 * 113.70821 * 174.92097 * 16 15 14 18 18 N 1.47676 * 85.96128 * 268.83725 * 17 16 15 19 19 C 1.34784 * 134.44835 * 155.68563 * 18 17 16 20 20 O 1.21284 * 119.99804 * 180.02562 * 19 18 17 21 21 C 1.50700 * 119.99855 * 0.05608 * 19 18 17 22 22 H 1.08995 * 115.55367 * 34.28713 * 21 19 18 23 23 C 1.53002 * 117.50042 * 248.61068 * 21 19 18 24 24 C 1.52994 * 60.00107 * 252.51554 * 23 21 19 25 25 C 1.52988 * 138.59105 * 130.88988 * 24 23 21 26 26 C 1.52999 * 138.58945 * 229.11146 * 24 23 21 27 27 C 1.47670 * 91.10546 * 335.72624 * 18 17 16 28 28 C 1.52700 * 112.84458 * 306.33931 * 16 15 14 29 29 C 1.46831 * 111.00160 * 65.47522 * 13 12 10 30 30 H 0.96998 * 120.00094 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99871 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.47342 * 59.99920 * 12 10 9 33 33 H 1.09002 * 109.47025 * 299.99304 * 12 10 9 34 34 H 1.09003 * 109.47304 * 52.18290 * 14 13 12 35 35 H 1.08994 * 109.47610 * 292.16155 * 14 13 12 36 36 H 1.09002 * 109.54862 * 296.92379 * 15 14 13 37 37 H 1.09000 * 109.54788 * 176.64316 * 15 14 13 38 38 H 1.09002 * 113.79826 * 23.09752 * 17 16 15 39 39 H 1.08998 * 113.79701 * 154.57615 * 17 16 15 40 40 H 1.09004 * 117.50101 * 0.02562 * 23 21 19 41 41 H 1.08997 * 117.50175 * 145.02876 * 23 21 19 42 42 H 1.08997 * 117.50464 * 238.38099 * 25 24 23 43 43 H 1.08997 * 117.49967 * 23.40969 * 25 24 23 44 44 H 1.08997 * 117.49598 * 336.59480 * 26 24 23 45 45 H 1.08996 * 117.49559 * 121.58671 * 26 24 23 46 46 H 1.09001 * 113.79616 * 270.01351 * 27 18 17 47 47 H 1.08997 * 113.90315 * 138.53782 * 27 18 17 48 48 H 1.08994 * 109.55168 * 173.51640 * 28 16 15 49 49 H 1.08999 * 109.54781 * 293.80413 * 28 16 15 50 50 H 1.09007 * 109.47549 * 307.81965 * 29 13 12 51 51 H 1.08996 * 109.48069 * 67.83248 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0466 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 3.0890 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2104 -3.5577 0.0021 12 6 1.2440 -4.8629 0.0022 13 7 2.1987 -5.9794 0.0027 14 6 1.5145 -7.2568 -0.2348 15 6 2.5555 -8.3656 -0.4217 16 6 3.4598 -8.4115 0.8079 17 6 4.4678 -9.5679 0.7895 18 7 3.4333 -10.3430 1.5035 19 6 3.1590 -11.6563 1.6326 20 8 2.2143 -12.0155 2.3030 21 6 4.0266 -12.6784 0.9444 22 1 5.0844 -12.4255 0.8728 23 6 3.4086 -13.4655 -0.2130 24 6 3.6634 -14.1531 1.1298 25 6 2.9102 -15.0322 2.1299 26 6 4.3085 -15.4360 1.6578 27 6 2.8190 -9.1029 2.0187 28 6 4.0849 -7.0572 1.1349 29 6 2.9732 -6.0090 1.2498 30 1 -0.4850 0.8400 -0.0004 31 1 0.3535 -2.3907 0.0005 32 1 0.6177 -4.9213 -0.8880 33 1 0.6171 -4.9201 0.8920 34 1 0.9011 -7.1791 -1.1324 35 1 0.8805 -7.4938 0.6195 36 1 3.1551 -8.1573 -1.3078 37 1 2.0501 -9.3243 -0.5387 38 1 4.6876 -9.9439 -0.2097 39 1 5.3635 -9.3801 1.3816 40 1 2.3745 -13.2437 -0.4769 41 1 4.0598 -13.7307 -1.0458 42 1 2.8110 -14.6622 3.1504 43 1 2.0660 -15.6109 1.7553 44 1 4.3841 -16.2802 0.9725 45 1 5.1293 -15.3314 2.3672 46 1 3.2239 -8.7765 2.9766 47 1 1.7293 -9.1076 1.9965 48 1 4.6234 -7.1227 2.0803 49 1 4.7741 -6.7722 0.3400 50 1 3.4151 -5.0283 1.4265 51 1 2.3155 -6.2661 2.0800 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673016982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:55 Heat of formation + Delta-G solvation = 33.636757 kcal Electronic energy + Delta-G solvation = -30323.380292 eV Core-core repulsion = 26225.992111 eV Total energy + Delta-G solvation = -4097.388181 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.17463 -39.54149 -38.47971 -37.41776 -36.44130 -33.90245 -33.05464 -32.20692 -31.20026 -30.85100 -28.52249 -26.87896 -26.12575 -24.26528 -23.60356 -23.16353 -22.73662 -21.55131 -20.18450 -19.19171 -18.82195 -18.38873 -17.84984 -17.30985 -16.12121 -16.06824 -15.95292 -15.42103 -15.35565 -15.09769 -14.94707 -14.58267 -14.35272 -14.10701 -13.84370 -13.75277 -13.61442 -13.21616 -12.82641 -12.65746 -12.46721 -12.33316 -12.12244 -12.03059 -11.82766 -11.80513 -11.49419 -11.36895 -11.09803 -11.02613 -10.65285 -10.57688 -10.51322 -10.43743 -10.41025 -10.38079 -10.32137 -10.21485 -9.75478 -9.45332 -8.89786 -8.40878 -7.96953 -7.81790 -6.41442 -3.82255 2.22791 2.50977 3.17730 3.26455 3.31835 3.34923 3.37134 3.88873 3.90669 3.95483 4.10554 4.19134 4.26629 4.40404 4.56225 4.61843 4.73831 4.96129 5.02078 5.04817 5.12361 5.16078 5.19462 5.24941 5.26064 5.28151 5.30222 5.31461 5.37281 5.44596 5.49589 5.54978 5.59049 5.59596 5.65501 5.68961 5.82025 5.82748 5.86851 5.89858 6.01215 6.05310 6.14086 6.28757 6.38544 6.49145 7.31870 7.45567 7.48880 7.55354 7.97599 8.06895 8.62233 9.18450 9.55193 10.06844 10.76277 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.039258 B = 0.001711 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.067220 B =16364.762441 C =16536.407391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.444 3.556 11 O -0.577 6.577 12 C 0.046 3.954 13 N -0.515 5.515 14 C 0.056 3.944 15 C -0.086 4.086 16 C -0.089 4.089 17 C 0.109 3.891 18 N -0.639 5.639 19 C 0.561 3.439 20 O -0.538 6.538 21 C -0.136 4.136 22 H 0.122 0.878 23 C -0.099 4.099 24 C -0.203 4.203 25 C -0.113 4.113 26 C -0.129 4.129 27 C 0.115 3.885 28 C -0.096 4.096 29 C 0.054 3.946 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.029 0.971 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.067 0.933 49 H 0.081 0.919 50 H 0.106 0.894 51 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.246 -26.032 0.914 26.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.230 3.770 11 O -0.462 6.462 12 C -0.085 4.085 13 N -0.240 5.240 14 C -0.072 4.072 15 C -0.123 4.123 16 C -0.090 4.090 17 C -0.014 4.014 18 N -0.374 5.374 19 C 0.351 3.649 20 O -0.415 6.415 21 C -0.157 4.157 22 H 0.139 0.861 23 C -0.136 4.136 24 C -0.203 4.203 25 C -0.150 4.150 26 C -0.166 4.166 27 C -0.007 4.007 28 C -0.134 4.134 29 C -0.074 4.074 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.103 0.897 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.100 0.900 50 H 0.124 0.876 51 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 6.694 -26.203 0.928 27.061 hybrid contribution -0.755 0.850 0.678 1.324 sum 5.939 -25.353 1.606 26.089 Atomic orbital electron populations 1.69612 1.05935 1.28126 1.50654 1.25254 0.95617 0.99700 0.97373 0.85866 0.79205 0.80875 0.78379 1.20421 1.20984 1.19451 1.19692 0.93347 0.82222 1.47554 0.87908 1.41879 1.09198 1.04613 1.64438 1.19747 0.88413 0.84543 0.84338 1.90475 1.13668 1.86891 1.55141 1.21828 0.93962 0.91241 1.01454 1.61398 1.24944 1.01301 1.36310 1.22098 0.95185 0.89451 1.00480 1.21279 0.96768 0.97781 0.96500 1.22155 0.96089 0.94777 0.95977 1.23342 0.92400 0.88278 0.97372 1.49994 1.32182 1.03729 1.51541 1.19355 0.84458 0.80786 0.80292 1.90700 1.30440 1.79386 1.40986 1.21887 0.99861 0.90205 1.03722 0.86060 1.22654 1.02001 0.98885 0.90058 1.21178 1.08883 0.90239 1.00048 1.22596 0.94685 0.99402 0.98319 1.22768 0.96972 0.94643 1.02216 1.23279 0.99826 0.80200 0.97395 1.21469 0.98137 0.91794 1.01988 1.22254 0.94745 1.01590 0.88797 0.91899 0.77514 0.89417 0.93595 0.90649 0.95284 0.90199 0.91592 0.89745 0.89415 0.88059 0.87516 0.88252 0.88478 0.88261 0.88553 0.89731 0.90202 0.91413 0.89991 0.87640 0.96104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 9 N -0.56 -14.05 5.29 -10.97 -0.06 -14.11 16 10 C 0.44 10.16 7.44 -10.99 -0.08 10.08 16 11 O -0.58 -14.92 13.89 5.55 0.08 -14.85 16 12 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 13 N -0.51 -8.06 4.36 -235.88 -1.03 -9.09 16 14 C 0.06 0.69 5.42 -3.74 -0.02 0.67 16 15 C -0.09 -0.89 5.22 -26.77 -0.14 -1.03 16 16 C -0.09 -0.87 0.79 -154.47 -0.12 -0.99 16 17 C 0.11 0.87 7.75 -3.19 -0.02 0.85 16 18 N -0.64 -6.71 3.46 -180.64 -0.63 -7.34 16 19 C 0.56 6.82 7.84 -10.98 -0.09 6.73 16 20 O -0.54 -8.55 16.97 5.55 0.09 -8.46 16 21 C -0.14 -1.24 5.94 -91.77 -0.54 -1.79 16 22 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 23 C -0.10 -0.77 10.23 -26.73 -0.27 -1.04 16 24 C -0.20 -1.82 5.05 -154.52 -0.78 -2.60 16 25 C -0.11 -0.99 10.16 -26.74 -0.27 -1.26 16 26 C -0.13 -0.89 10.53 -26.73 -0.28 -1.17 16 27 C 0.11 1.22 7.73 -3.18 -0.02 1.19 16 28 C -0.10 -1.10 5.29 -26.76 -0.14 -1.24 16 29 C 0.05 0.80 5.06 -3.74 -0.02 0.79 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 32 H 0.09 1.39 7.96 -51.93 -0.41 0.97 16 33 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 34 H 0.08 0.88 7.98 -51.93 -0.41 0.46 16 35 H 0.03 0.35 7.68 -51.93 -0.40 -0.05 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.66 8.01 -51.93 -0.42 0.24 16 38 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 39 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.84 8.02 -51.93 -0.42 0.42 16 47 H 0.08 0.93 7.66 -51.93 -0.40 0.53 16 48 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 49 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.11 1.98 5.74 -51.93 -0.30 1.68 16 51 H 0.02 0.29 8.09 -51.93 -0.42 -0.13 16 LS Contribution 413.12 15.07 6.23 6.23 Total: -1.00 -32.83 413.12 -11.19 -44.02 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -8.49 Total: 9.27 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -3.08 Total: 2.13 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.99 Total: -54.15 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.17 Total: -23.30 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.83 -11.19 -44.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673016982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.655 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds