Wall clock time and date at job start Wed Apr 1 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86806 * 119.99560 * 2 1 4 4 H 1.48502 * 109.47125 * 269.99889 * 3 2 1 5 5 H 1.48495 * 109.47337 * 29.99808 * 3 2 1 6 6 H 1.48507 * 109.46966 * 150.00032 * 3 2 1 7 7 C 1.38942 * 120.00483 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00486 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99987 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00375 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99775 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00191 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.46964 * 179.97438 * 12 10 9 14 14 C 1.46847 * 110.99790 * 189.99832 * 13 12 10 15 15 C 1.53225 * 109.43382 * 172.17256 * 14 13 12 16 16 C 1.52706 * 109.01712 * 56.78283 * 15 14 13 17 17 C 1.53414 * 113.70821 * 174.92097 * 16 15 14 18 18 N 1.47676 * 85.96128 * 268.83725 * 17 16 15 19 19 C 1.34784 * 134.44835 * 155.68563 * 18 17 16 20 20 O 1.21284 * 119.99804 * 180.02562 * 19 18 17 21 21 C 1.50700 * 119.99855 * 0.05608 * 19 18 17 22 22 H 1.08995 * 115.55367 * 34.28713 * 21 19 18 23 23 C 1.53002 * 117.50042 * 248.61068 * 21 19 18 24 24 C 1.52994 * 60.00107 * 252.51554 * 23 21 19 25 25 C 1.52988 * 138.59105 * 130.88988 * 24 23 21 26 26 C 1.52999 * 138.58945 * 229.11146 * 24 23 21 27 27 C 1.47670 * 91.10546 * 335.72624 * 18 17 16 28 28 C 1.52700 * 112.84458 * 306.33931 * 16 15 14 29 29 C 1.46831 * 111.00160 * 65.47522 * 13 12 10 30 30 H 0.96998 * 120.00094 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99871 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.47342 * 59.99920 * 12 10 9 33 33 H 1.09002 * 109.47025 * 299.99304 * 12 10 9 34 34 H 1.09003 * 109.47304 * 52.18290 * 14 13 12 35 35 H 1.08994 * 109.47610 * 292.16155 * 14 13 12 36 36 H 1.09002 * 109.54862 * 296.92379 * 15 14 13 37 37 H 1.09000 * 109.54788 * 176.64316 * 15 14 13 38 38 H 1.09002 * 113.79826 * 23.09752 * 17 16 15 39 39 H 1.08998 * 113.79701 * 154.57615 * 17 16 15 40 40 H 1.09004 * 117.50101 * 0.02562 * 23 21 19 41 41 H 1.08997 * 117.50175 * 145.02876 * 23 21 19 42 42 H 1.08997 * 117.50464 * 238.38099 * 25 24 23 43 43 H 1.08997 * 117.49967 * 23.40969 * 25 24 23 44 44 H 1.08997 * 117.49598 * 336.59480 * 26 24 23 45 45 H 1.08996 * 117.49559 * 121.58671 * 26 24 23 46 46 H 1.09001 * 113.79616 * 270.01351 * 27 18 17 47 47 H 1.08997 * 113.90315 * 138.53782 * 27 18 17 48 48 H 1.08994 * 109.55168 * 173.51640 * 28 16 15 49 49 H 1.08999 * 109.54781 * 293.80413 * 28 16 15 50 50 H 1.09007 * 109.47549 * 307.81965 * 29 13 12 51 51 H 1.08996 * 109.48069 * 67.83248 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0466 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 3.0890 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2104 -3.5577 0.0021 12 6 1.2440 -4.8629 0.0022 13 7 2.1987 -5.9794 0.0027 14 6 1.5145 -7.2568 -0.2348 15 6 2.5555 -8.3656 -0.4217 16 6 3.4598 -8.4115 0.8079 17 6 4.4678 -9.5679 0.7895 18 7 3.4333 -10.3430 1.5035 19 6 3.1590 -11.6563 1.6326 20 8 2.2143 -12.0155 2.3030 21 6 4.0266 -12.6784 0.9444 22 1 5.0844 -12.4255 0.8728 23 6 3.4086 -13.4655 -0.2130 24 6 3.6634 -14.1531 1.1298 25 6 2.9102 -15.0322 2.1299 26 6 4.3085 -15.4360 1.6578 27 6 2.8190 -9.1029 2.0187 28 6 4.0849 -7.0572 1.1349 29 6 2.9732 -6.0090 1.2498 30 1 -0.4850 0.8400 -0.0004 31 1 0.3535 -2.3907 0.0005 32 1 0.6177 -4.9213 -0.8880 33 1 0.6171 -4.9201 0.8920 34 1 0.9011 -7.1791 -1.1324 35 1 0.8805 -7.4938 0.6195 36 1 3.1551 -8.1573 -1.3078 37 1 2.0501 -9.3243 -0.5387 38 1 4.6876 -9.9439 -0.2097 39 1 5.3635 -9.3801 1.3816 40 1 2.3745 -13.2437 -0.4769 41 1 4.0598 -13.7307 -1.0458 42 1 2.8110 -14.6622 3.1504 43 1 2.0660 -15.6109 1.7553 44 1 4.3841 -16.2802 0.9725 45 1 5.1293 -15.3314 2.3672 46 1 3.2239 -8.7765 2.9766 47 1 1.7293 -9.1076 1.9965 48 1 4.6234 -7.1227 2.0803 49 1 4.7741 -6.7722 0.3400 50 1 3.4151 -5.0283 1.4265 51 1 2.3155 -6.2661 2.0800 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673016982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:54 Heat of formation + Delta-G solvation = 12.541962 kcal Electronic energy + Delta-G solvation = -30324.295031 eV Core-core repulsion = 26225.992111 eV Total energy + Delta-G solvation = -4098.302920 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.03938 -40.54518 -39.94799 -38.34599 -37.62436 -35.86400 -33.79273 -33.36357 -33.01843 -31.86406 -29.67867 -27.85082 -27.36696 -25.86622 -24.50134 -24.10811 -23.30878 -22.62194 -20.99966 -20.86396 -19.84872 -19.59487 -19.23943 -18.14362 -17.67646 -16.95222 -16.91113 -16.64099 -16.43091 -16.23865 -15.92078 -15.83551 -15.58293 -15.36663 -15.18129 -14.98053 -14.84002 -14.15487 -13.93277 -13.73284 -13.50520 -13.46628 -13.40861 -13.18405 -12.90330 -12.79071 -12.68250 -12.54353 -12.39121 -12.38807 -12.11805 -12.06587 -11.65512 -11.50880 -11.37635 -11.30665 -11.17580 -11.10196 -10.95369 -10.64647 -10.18713 -9.96436 -9.73424 -9.13453 -8.44037 -5.92411 1.39429 1.40144 1.42950 1.55469 1.72765 2.08976 2.30054 2.71636 2.74527 2.79483 3.23048 3.24579 3.30370 3.44932 3.48137 3.73242 3.81524 3.87460 4.02672 4.07952 4.25940 4.30110 4.30889 4.38620 4.45530 4.50356 4.53642 4.55102 4.57317 4.57832 4.63818 4.70519 4.72109 4.74899 4.77972 4.80579 4.82517 4.91392 4.99068 5.03650 5.06173 5.13842 5.21961 5.24409 5.30265 5.39806 5.43520 5.93723 6.14042 6.31092 6.63641 6.67388 7.09989 7.15917 7.60087 8.15616 8.73406 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.039258 B = 0.001711 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.067220 B =16364.762441 C =16536.407391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.330 4.330 8 H 0.081 0.919 9 N -0.577 5.577 10 C 0.444 3.556 11 O -0.609 6.609 12 C 0.057 3.943 13 N -0.528 5.528 14 C 0.056 3.944 15 C -0.079 4.079 16 C -0.082 4.082 17 C 0.119 3.881 18 N -0.639 5.639 19 C 0.553 3.447 20 O -0.588 6.588 21 C -0.140 4.140 22 H 0.145 0.855 23 C -0.085 4.085 24 C -0.228 4.228 25 C -0.134 4.134 26 C -0.104 4.104 27 C 0.109 3.891 28 C -0.085 4.085 29 C 0.054 3.946 30 H 0.276 0.724 31 H 0.395 0.605 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.032 0.968 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.135 0.865 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.120 0.880 45 H 0.104 0.896 46 H 0.091 0.909 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.073 0.927 50 H 0.063 0.937 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.506 -27.473 -0.093 28.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.214 4.214 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.099 0.901 9 N -0.214 5.214 10 C 0.231 3.769 11 O -0.495 6.495 12 C -0.074 4.074 13 N -0.254 5.254 14 C -0.072 4.072 15 C -0.117 4.117 16 C -0.083 4.083 17 C -0.002 4.002 18 N -0.373 5.373 19 C 0.345 3.655 20 O -0.469 6.469 21 C -0.161 4.161 22 H 0.162 0.838 23 C -0.122 4.122 24 C -0.229 4.229 25 C -0.171 4.171 26 C -0.141 4.141 27 C -0.014 4.014 28 C -0.124 4.124 29 C -0.074 4.074 30 H 0.086 0.914 31 H 0.228 0.772 32 H 0.125 0.875 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.050 0.950 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.108 0.892 41 H 0.153 0.847 42 H 0.097 0.903 43 H 0.119 0.881 44 H 0.138 0.862 45 H 0.122 0.878 46 H 0.109 0.891 47 H 0.084 0.916 48 H 0.103 0.897 49 H 0.092 0.908 50 H 0.081 0.919 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 7.962 -27.647 -0.096 28.771 hybrid contribution -1.172 1.280 1.024 2.015 sum 6.790 -26.368 0.928 27.244 Atomic orbital electron populations 1.69679 1.06863 1.29162 1.50670 1.26024 0.96505 1.02394 0.96459 0.84934 0.77886 0.76960 0.78594 1.19700 1.19781 1.19687 1.19665 0.92720 0.83957 1.49617 0.90142 1.41956 1.09264 1.04765 1.65443 1.20727 0.88345 0.85797 0.82041 1.90454 1.15447 1.87701 1.55903 1.21706 0.93779 0.88935 1.03016 1.61411 1.25092 1.02152 1.36698 1.22190 0.95799 0.88211 1.00953 1.21233 0.96398 0.97213 0.96823 1.22018 0.96611 0.94322 0.95352 1.23484 0.91913 0.86186 0.98667 1.50080 1.32612 1.03386 1.51174 1.19951 0.84175 0.81578 0.79829 1.90673 1.32679 1.80244 1.43264 1.21937 1.00377 0.89436 1.04356 0.83783 1.22737 1.01857 0.97386 0.90219 1.21463 1.09799 0.90786 1.00831 1.22587 0.96421 1.00556 0.97527 1.22853 0.95545 0.93954 1.01718 1.23325 0.99199 0.80742 0.98098 1.21376 0.96806 0.91500 1.02687 1.22163 0.95729 1.00540 0.88936 0.91436 0.77192 0.87451 0.92191 0.89742 0.95025 0.89855 0.90794 0.87566 0.87434 0.89239 0.84678 0.90287 0.88129 0.86237 0.87817 0.89136 0.91615 0.89695 0.90793 0.91866 0.95545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.87 13.05 21.66 0.28 -49.59 16 2 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 3 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.33 -18.59 9.68 84.04 0.81 -17.78 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.78 16 9 N -0.58 -29.42 5.29 -306.99 -1.62 -31.04 16 10 C 0.44 20.74 7.44 87.66 0.65 21.40 16 11 O -0.61 -32.50 13.89 -3.07 -0.04 -32.54 16 12 C 0.06 1.95 5.45 85.56 0.47 2.42 16 13 N -0.53 -16.18 4.36 -900.19 -3.92 -20.10 16 14 C 0.06 1.28 5.42 86.39 0.47 1.75 16 15 C -0.08 -1.47 5.22 30.57 0.16 -1.31 16 16 C -0.08 -1.44 0.79 -52.06 -0.04 -1.48 16 17 C 0.12 1.53 7.75 86.29 0.67 2.20 16 18 N -0.64 -12.25 3.46 -843.80 -2.92 -15.17 16 19 C 0.55 12.90 7.84 87.66 0.69 13.59 16 20 O -0.59 -19.01 16.97 -3.04 -0.05 -19.06 16 21 C -0.14 -2.26 5.94 -11.54 -0.07 -2.33 16 22 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 23 C -0.08 -1.12 10.23 30.59 0.31 -0.81 16 24 C -0.23 -3.71 5.05 -52.19 -0.26 -3.98 16 25 C -0.13 -2.31 10.16 30.59 0.31 -2.00 16 26 C -0.10 -1.20 10.53 30.59 0.32 -0.88 16 27 C 0.11 2.16 7.73 86.30 0.67 2.83 16 28 C -0.09 -1.85 5.29 30.57 0.16 -1.69 16 29 C 0.05 1.62 5.06 86.39 0.44 2.05 16 30 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 31 H 0.39 19.28 7.90 -92.71 -0.73 18.55 16 32 H 0.11 3.27 7.96 -2.39 -0.02 3.25 16 33 H 0.06 1.90 8.13 -2.39 -0.02 1.88 16 34 H 0.08 1.79 7.98 -2.39 -0.02 1.77 16 35 H 0.03 0.72 7.68 -2.39 -0.02 0.70 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.31 8.01 -2.39 -0.02 1.29 16 38 H 0.11 0.98 8.09 -2.39 -0.02 0.96 16 39 H 0.11 1.04 8.09 -2.39 -0.02 1.02 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.09 1.69 8.02 -2.39 -0.02 1.67 16 47 H 0.07 1.50 7.66 -2.39 -0.02 1.48 16 48 H 0.08 1.54 8.04 -2.39 -0.02 1.52 16 49 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.06 2.45 5.74 -2.38 -0.01 2.44 16 51 H 0.03 0.74 8.09 -2.39 -0.02 0.72 16 Total: -1.00 -73.82 413.12 0.17 -73.65 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: 0.20 Total: 35.36 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 6.22 Total: 13.68 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -8.18 Total: -115.90 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: -0.09 Total: -51.61 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -73.82 0.17 -73.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673016982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.192 kcal (2) G-P(sol) polarization free energy of solvation -73.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds