Wall clock time and date at job start Wed Apr 1 2020 05:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00374 * 2 1 4 4 H 1.48496 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47049 * 299.99911 * 3 2 1 6 6 H 1.48500 * 109.46845 * 59.99964 * 3 2 1 7 7 C 1.38817 * 119.99496 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99506 * 201.68380 * 7 2 1 9 9 N 1.36932 * 120.00505 * 21.41220 * 7 2 1 10 10 C 1.46500 * 120.00063 * 36.66617 * 9 7 2 11 11 C 1.52998 * 109.47085 * 90.00053 * 10 9 7 12 12 O 1.42910 * 109.46823 * 65.00363 * 11 10 9 13 13 C 1.46503 * 120.00047 * 216.67389 * 9 7 2 14 14 H 1.09002 * 109.49778 * 176.07262 * 13 9 7 15 15 C 1.53045 * 109.49428 * 296.16657 * 13 9 7 16 16 C 1.53041 * 109.53508 * 181.32004 * 15 13 9 17 17 C 1.53194 * 109.31108 * 298.63096 * 16 15 13 18 18 N 1.46927 * 108.77226 * 54.63853 * 17 16 15 19 19 C 1.34778 * 120.62656 * 126.36712 * 18 17 16 20 20 O 1.21696 * 119.99992 * 180.29601 * 19 18 17 21 21 C 1.46678 * 120.00230 * 0.29553 * 19 18 17 22 22 C 1.37756 * 126.22439 * 205.14929 * 21 19 18 23 23 C 1.40111 * 107.10555 * 179.84953 * 22 21 19 24 24 C 1.35324 * 107.92703 * 0.42537 * 23 22 21 25 25 N 1.36004 * 108.68015 * 359.72652 * 24 23 22 26 26 H 0.97002 * 125.63256 * 179.97438 * 25 24 23 27 27 C 1.51502 * 110.12214 * 179.73507 * 24 23 22 28 28 C 1.54404 * 105.03206 * 17.00266 * 27 24 23 29 29 C 1.51350 * 141.74176 * 180.02562 * 23 22 21 30 30 C 1.46919 * 118.74297 * 306.39082 * 18 17 16 31 31 H 0.97000 * 119.99861 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47573 * 210.00403 * 10 9 7 33 33 H 1.09004 * 109.47163 * 330.00001 * 10 9 7 34 34 H 1.09004 * 109.47045 * 184.99897 * 11 10 9 35 35 H 1.08992 * 109.47247 * 305.00317 * 11 10 9 36 36 H 0.96698 * 113.99710 * 179.97438 * 12 11 10 37 37 H 1.08999 * 109.45781 * 301.34012 * 15 13 9 38 38 H 1.08997 * 109.45894 * 61.29584 * 15 13 9 39 39 H 1.09003 * 109.49199 * 178.68135 * 16 15 13 40 40 H 1.08997 * 109.52430 * 58.60155 * 16 15 13 41 41 H 1.08992 * 109.58660 * 294.85088 * 17 16 15 42 42 H 1.09002 * 109.58378 * 174.42260 * 17 16 15 43 43 H 1.08003 * 126.44885 * 359.96479 * 22 21 19 44 44 H 1.09001 * 110.33311 * 135.89327 * 27 24 23 45 45 H 1.09004 * 110.33034 * 258.11069 * 27 24 23 46 46 H 1.08992 * 110.92178 * 92.34099 * 28 27 24 47 47 H 1.09002 * 110.92187 * 215.94273 * 28 27 24 48 48 H 1.09006 * 110.33506 * 44.53534 * 29 23 22 49 49 H 1.08996 * 110.33794 * 282.29590 * 29 23 22 50 50 H 1.09002 * 109.58719 * 293.82075 * 30 18 17 51 51 H 1.08993 * 109.70673 * 173.47018 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0329 -1.2355 0.3451 9 7 1.3964 -2.3470 -0.4340 10 6 0.4567 -2.2943 -1.5566 11 6 1.2156 -2.5100 -2.8675 12 8 1.7593 -3.8314 -2.8913 13 6 1.6793 -3.6245 0.2251 14 1 1.0517 -4.4038 -0.2072 15 6 3.1532 -3.9860 0.0269 16 6 3.4421 -5.3363 0.6869 17 6 3.1673 -5.2343 2.1905 18 7 1.7953 -4.7471 2.3885 19 6 0.9300 -5.4288 3.1651 20 8 -0.2054 -5.0178 3.3168 21 6 1.3566 -6.6661 3.8273 22 6 0.5381 -7.6998 4.2263 23 6 1.3593 -8.6748 4.8078 24 6 2.6350 -8.2253 4.7635 25 7 2.6456 -7.0026 4.1681 26 1 3.4324 -6.4576 4.0104 27 6 3.5680 -9.2426 5.3880 28 6 2.7581 -10.5565 5.4292 29 6 1.3043 -10.0370 5.4650 30 6 1.3844 -3.5032 1.7235 31 1 -0.4850 0.8401 -0.0004 32 1 -0.2944 -3.0755 -1.4389 33 1 -0.0322 -1.3203 -1.5758 34 1 0.5330 -2.3828 -3.7077 35 1 2.0242 -1.7830 -2.9430 36 1 2.2546 -4.0385 -3.6956 37 1 3.3714 -4.0488 -1.0391 38 1 3.7796 -3.2183 0.4810 39 1 4.4862 -5.6041 0.5252 40 1 2.7987 -6.1002 0.2504 41 1 3.8716 -4.5372 2.6443 42 1 3.2758 -6.2171 2.6493 43 1 -0.5345 -7.7502 4.1107 44 1 4.4595 -9.3663 4.7732 45 1 3.8427 -8.9352 6.3971 46 1 2.9369 -11.1521 4.5341 47 1 2.9897 -11.1285 6.3277 48 1 0.6500 -10.7029 4.9023 49 1 0.9593 -9.9470 6.4950 50 1 1.9434 -2.6648 2.1391 51 1 0.3172 -3.3411 1.8740 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707214702.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:40 Heat of formation + Delta-G solvation = 8.136726 kcal Electronic energy + Delta-G solvation = -31851.586360 eV Core-core repulsion = 27753.092415 eV Total energy + Delta-G solvation = -4098.493945 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.82282 -39.46553 -37.41484 -36.28922 -36.11865 -34.67415 -32.26929 -31.31618 -31.08949 -29.87730 -28.19353 -27.43135 -27.05381 -25.07804 -24.29366 -22.55596 -22.14515 -21.06884 -20.53281 -19.83998 -19.26952 -19.06107 -17.17334 -16.80966 -16.26928 -16.14047 -15.80064 -15.42324 -15.10332 -14.63910 -14.45387 -14.01216 -13.83495 -13.64464 -13.41734 -13.39291 -13.16114 -13.07625 -12.98961 -12.81561 -12.54236 -12.37364 -11.95418 -11.83758 -11.49547 -11.38533 -11.29990 -11.21382 -11.12162 -11.02585 -10.72842 -10.60121 -10.43652 -10.25206 -9.96552 -9.86276 -9.69624 -9.57307 -9.16930 -8.78454 -8.54069 -8.27115 -7.90510 -6.59476 -5.82422 -3.39126 1.59492 2.62949 2.77991 3.22838 3.31229 3.41000 3.42427 3.60949 4.33087 4.42666 4.44831 4.68631 4.75165 4.88690 5.04103 5.12907 5.20704 5.21520 5.25699 5.34164 5.39174 5.45064 5.49810 5.51757 5.65624 5.66519 5.81368 5.90711 5.93831 5.97973 6.01826 6.13855 6.17792 6.22490 6.28813 6.36557 6.44364 6.54511 6.68321 6.74687 6.77081 6.84387 6.99081 7.05152 7.17281 7.20343 7.34527 7.57584 7.75874 7.79402 8.32345 8.45059 8.48965 9.15512 9.78280 10.38480 11.17513 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016844 B = 0.002739 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.888677 B =10219.325027 C =10642.438023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.010 3.990 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.257 4.257 8 H 0.061 0.939 9 N -0.569 5.569 10 C 0.148 3.852 11 C 0.056 3.944 12 O -0.567 6.567 13 C 0.177 3.823 14 H 0.053 0.947 15 C -0.124 4.124 16 C -0.128 4.128 17 C 0.086 3.914 18 N -0.602 5.602 19 C 0.582 3.418 20 O -0.529 6.529 21 C -0.028 4.028 22 C -0.096 4.096 23 C -0.194 4.194 24 C 0.000 4.000 25 N -0.525 5.525 26 H 0.417 0.583 27 C -0.039 4.039 28 C -0.115 4.115 29 C -0.049 4.049 30 C 0.107 3.893 31 H 0.255 0.745 32 H 0.030 0.970 33 H 0.109 0.891 34 H 0.022 0.978 35 H 0.041 0.959 36 H 0.355 0.645 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.144 0.856 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.075 0.925 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.982 -18.194 5.644 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.190 4.190 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.387 4.387 8 H 0.079 0.921 9 N -0.288 5.288 10 C 0.021 3.979 11 C -0.023 4.023 12 O -0.370 6.370 13 C 0.069 3.931 14 H 0.071 0.929 15 C -0.164 4.164 16 C -0.167 4.167 17 C -0.038 4.038 18 N -0.335 5.335 19 C 0.369 3.631 20 O -0.405 6.405 21 C -0.140 4.140 22 C -0.122 4.122 23 C -0.200 4.200 24 C -0.116 4.116 25 N -0.127 5.127 26 H 0.261 0.739 27 C -0.078 4.078 28 C -0.153 4.153 29 C -0.087 4.087 30 C -0.016 4.016 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.126 0.874 34 H 0.040 0.960 35 H 0.059 0.941 36 H 0.198 0.802 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.162 0.838 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.093 0.907 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.050 -17.658 6.273 20.394 hybrid contribution 1.182 1.462 -0.785 2.038 sum 9.232 -16.195 5.487 19.433 Atomic orbital electron populations 1.69982 1.05474 1.25711 1.51568 1.25180 0.94995 0.98683 1.00160 0.86363 0.79691 0.84178 0.77359 1.20188 1.21497 1.21660 1.18997 0.94186 0.85504 1.39981 0.92107 1.43679 1.50666 1.02470 1.32007 1.21100 0.90558 1.02611 0.83597 1.23150 0.96660 0.82662 0.99857 1.86600 1.73653 1.33311 1.43471 1.20533 0.93478 0.89353 0.89756 0.92876 1.21962 0.99560 0.94009 1.00862 1.21883 1.00870 1.00022 0.93926 1.22228 0.83872 0.99070 0.98584 1.48242 1.11648 1.25946 1.47688 1.17098 0.85185 0.81727 0.79049 1.90849 1.18898 1.67514 1.63230 1.20387 0.82993 0.98872 1.11773 1.20636 0.98884 0.91759 1.00963 1.20261 0.93336 0.98541 1.07842 1.21280 0.98773 0.88251 1.03335 1.42323 1.08307 1.15497 1.46587 0.73861 1.20670 0.96203 0.91142 0.99753 1.22321 0.94653 0.95738 1.02561 1.20460 0.96585 0.91900 0.99725 1.22389 1.02297 0.82709 0.94164 0.93462 0.95158 0.87396 0.96000 0.94080 0.80158 0.91091 0.92410 0.91633 0.91847 0.91306 0.90256 0.83805 0.90976 0.90138 0.90723 0.90262 0.91232 0.90980 0.90681 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.73 11.41 55.49 0.63 -24.09 16 2 C 0.01 0.27 4.96 -17.43 -0.09 0.18 16 3 Si 0.89 20.91 29.61 -169.99 -5.03 15.88 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 7 C -0.26 -6.60 8.01 -15.06 -0.12 -6.72 16 8 H 0.06 1.57 7.04 -52.49 -0.37 1.20 16 9 N -0.57 -13.58 2.34 -165.52 -0.39 -13.96 16 10 C 0.15 3.45 5.68 -4.04 -0.02 3.42 16 11 C 0.06 1.10 7.39 37.16 0.27 1.38 16 12 O -0.57 -10.19 12.16 -35.23 -0.43 -10.62 16 13 C 0.18 3.74 2.39 -67.81 -0.16 3.58 16 14 H 0.05 1.20 7.77 -51.93 -0.40 0.79 16 15 C -0.12 -2.22 5.17 -26.69 -0.14 -2.36 16 16 C -0.13 -1.80 6.08 -26.61 -0.16 -1.97 16 17 C 0.09 1.16 5.57 -3.71 -0.02 1.14 16 18 N -0.60 -10.65 2.97 -174.32 -0.52 -11.17 16 19 C 0.58 10.94 7.64 -12.85 -0.10 10.84 16 20 O -0.53 -12.02 16.39 5.19 0.09 -11.94 16 21 C -0.03 -0.43 6.46 -82.09 -0.53 -0.96 16 22 C -0.10 -1.42 10.74 -39.06 -0.42 -1.84 16 23 C -0.19 -2.36 6.89 -104.64 -0.72 -3.08 16 24 C 0.00 0.01 8.01 -81.39 -0.65 -0.65 16 25 N -0.52 -6.32 4.82 -5.44 -0.03 -6.35 16 26 H 0.42 4.12 6.14 -40.82 -0.25 3.87 16 27 C -0.04 -0.29 6.79 -26.75 -0.18 -0.47 16 28 C -0.11 -0.73 7.12 -25.25 -0.18 -0.91 16 29 C -0.05 -0.42 6.79 -26.82 -0.18 -0.61 16 30 C 0.11 2.28 5.71 -3.72 -0.02 2.25 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.03 0.71 7.89 -51.93 -0.41 0.30 16 33 H 0.11 2.79 5.45 -51.93 -0.28 2.51 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.35 4.61 9.12 45.56 0.42 5.03 16 37 H 0.07 1.32 7.06 -51.93 -0.37 0.96 16 38 H 0.06 1.08 7.19 -51.93 -0.37 0.71 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.91 3.66 -51.93 -0.19 0.72 16 43 H 0.14 2.09 8.06 -52.48 -0.42 1.67 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.07 1.70 7.41 -51.93 -0.38 1.31 16 51 H 0.09 2.22 7.01 -51.93 -0.36 1.86 16 LS Contribution 394.07 15.07 5.94 5.94 Total: -1.00 -32.07 394.07 -10.35 -42.42 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -7.19 Total: 10.66 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -3.42 Total: 3.23 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.30 Total: -55.57 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.34 Total: -22.56 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.07 -10.35 -42.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707214702.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.558 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds