Wall clock time and date at job start Wed Apr 1 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00374 * 2 1 4 4 H 1.48496 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47049 * 299.99911 * 3 2 1 6 6 H 1.48500 * 109.46845 * 59.99964 * 3 2 1 7 7 C 1.38817 * 119.99496 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99506 * 201.68380 * 7 2 1 9 9 N 1.36932 * 120.00505 * 21.41220 * 7 2 1 10 10 C 1.46500 * 120.00063 * 36.66617 * 9 7 2 11 11 C 1.52998 * 109.47085 * 90.00053 * 10 9 7 12 12 O 1.42910 * 109.46823 * 65.00363 * 11 10 9 13 13 C 1.46503 * 120.00047 * 216.67389 * 9 7 2 14 14 H 1.09002 * 109.49778 * 176.07262 * 13 9 7 15 15 C 1.53045 * 109.49428 * 296.16657 * 13 9 7 16 16 C 1.53041 * 109.53508 * 181.32004 * 15 13 9 17 17 C 1.53194 * 109.31108 * 298.63096 * 16 15 13 18 18 N 1.46927 * 108.77226 * 54.63853 * 17 16 15 19 19 C 1.34778 * 120.62656 * 126.36712 * 18 17 16 20 20 O 1.21696 * 119.99992 * 180.29601 * 19 18 17 21 21 C 1.46678 * 120.00230 * 0.29553 * 19 18 17 22 22 C 1.37756 * 126.22439 * 205.14929 * 21 19 18 23 23 C 1.40111 * 107.10555 * 179.84953 * 22 21 19 24 24 C 1.35324 * 107.92703 * 0.42537 * 23 22 21 25 25 N 1.36004 * 108.68015 * 359.72652 * 24 23 22 26 26 H 0.97002 * 125.63256 * 179.97438 * 25 24 23 27 27 C 1.51502 * 110.12214 * 179.73507 * 24 23 22 28 28 C 1.54404 * 105.03206 * 17.00266 * 27 24 23 29 29 C 1.51350 * 141.74176 * 180.02562 * 23 22 21 30 30 C 1.46919 * 118.74297 * 306.39082 * 18 17 16 31 31 H 0.97000 * 119.99861 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47573 * 210.00403 * 10 9 7 33 33 H 1.09004 * 109.47163 * 330.00001 * 10 9 7 34 34 H 1.09004 * 109.47045 * 184.99897 * 11 10 9 35 35 H 1.08992 * 109.47247 * 305.00317 * 11 10 9 36 36 H 0.96698 * 113.99710 * 179.97438 * 12 11 10 37 37 H 1.08999 * 109.45781 * 301.34012 * 15 13 9 38 38 H 1.08997 * 109.45894 * 61.29584 * 15 13 9 39 39 H 1.09003 * 109.49199 * 178.68135 * 16 15 13 40 40 H 1.08997 * 109.52430 * 58.60155 * 16 15 13 41 41 H 1.08992 * 109.58660 * 294.85088 * 17 16 15 42 42 H 1.09002 * 109.58378 * 174.42260 * 17 16 15 43 43 H 1.08003 * 126.44885 * 359.96479 * 22 21 19 44 44 H 1.09001 * 110.33311 * 135.89327 * 27 24 23 45 45 H 1.09004 * 110.33034 * 258.11069 * 27 24 23 46 46 H 1.08992 * 110.92178 * 92.34099 * 28 27 24 47 47 H 1.09002 * 110.92187 * 215.94273 * 28 27 24 48 48 H 1.09006 * 110.33506 * 44.53534 * 29 23 22 49 49 H 1.08996 * 110.33794 * 282.29590 * 29 23 22 50 50 H 1.09002 * 109.58719 * 293.82075 * 30 18 17 51 51 H 1.08993 * 109.70673 * 173.47018 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0329 -1.2355 0.3451 9 7 1.3964 -2.3470 -0.4340 10 6 0.4567 -2.2943 -1.5566 11 6 1.2156 -2.5100 -2.8675 12 8 1.7593 -3.8314 -2.8913 13 6 1.6793 -3.6245 0.2251 14 1 1.0517 -4.4038 -0.2072 15 6 3.1532 -3.9860 0.0269 16 6 3.4421 -5.3363 0.6869 17 6 3.1673 -5.2343 2.1905 18 7 1.7953 -4.7471 2.3885 19 6 0.9300 -5.4288 3.1651 20 8 -0.2054 -5.0178 3.3168 21 6 1.3566 -6.6661 3.8273 22 6 0.5381 -7.6998 4.2263 23 6 1.3593 -8.6748 4.8078 24 6 2.6350 -8.2253 4.7635 25 7 2.6456 -7.0026 4.1681 26 1 3.4324 -6.4576 4.0104 27 6 3.5680 -9.2426 5.3880 28 6 2.7581 -10.5565 5.4292 29 6 1.3043 -10.0370 5.4650 30 6 1.3844 -3.5032 1.7235 31 1 -0.4850 0.8401 -0.0004 32 1 -0.2944 -3.0755 -1.4389 33 1 -0.0322 -1.3203 -1.5758 34 1 0.5330 -2.3828 -3.7077 35 1 2.0242 -1.7830 -2.9430 36 1 2.2546 -4.0385 -3.6956 37 1 3.3714 -4.0488 -1.0391 38 1 3.7796 -3.2183 0.4810 39 1 4.4862 -5.6041 0.5252 40 1 2.7987 -6.1002 0.2504 41 1 3.8716 -4.5372 2.6443 42 1 3.2758 -6.2171 2.6493 43 1 -0.5345 -7.7502 4.1107 44 1 4.4595 -9.3663 4.7732 45 1 3.8427 -8.9352 6.3971 46 1 2.9369 -11.1521 4.5341 47 1 2.9897 -11.1285 6.3277 48 1 0.6500 -10.7029 4.9023 49 1 0.9593 -9.9470 6.4950 50 1 1.9434 -2.6648 2.1391 51 1 0.3172 -3.3411 1.8740 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707214702.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:39 Heat of formation + Delta-G solvation = -13.316149 kcal Electronic energy + Delta-G solvation = -31852.516627 eV Core-core repulsion = 27753.092415 eV Total energy + Delta-G solvation = -4099.424212 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.85853 -40.87477 -39.04204 -37.78165 -36.97938 -36.29800 -33.92999 -32.93369 -32.17825 -31.46292 -29.48343 -28.63153 -28.15899 -26.41419 -26.10746 -23.91287 -23.38330 -22.28926 -21.89634 -21.37787 -20.33193 -20.23699 -18.52138 -18.29685 -18.02438 -17.37996 -16.95713 -16.71835 -16.52837 -16.14729 -16.05199 -15.43838 -15.37149 -15.07276 -14.84179 -14.55771 -14.45818 -14.35678 -14.07285 -13.93414 -13.89555 -13.52576 -13.44570 -13.13172 -12.89723 -12.83557 -12.69481 -12.37215 -12.31128 -12.29709 -12.09507 -11.94229 -11.92739 -11.75348 -11.61574 -11.58690 -11.31000 -11.13865 -10.69665 -10.55010 -9.89395 -9.72532 -8.90918 -8.55851 -7.82385 -5.43440 0.41106 1.44039 1.47795 1.57194 1.61550 1.71749 1.88464 2.29556 2.50627 3.23517 3.39576 3.51674 3.63414 3.74544 3.84798 3.90345 4.01462 4.08896 4.23911 4.28695 4.31103 4.38538 4.46088 4.50934 4.56148 4.58422 4.60867 4.67045 4.81077 4.86612 4.89250 4.92047 4.94424 5.02068 5.06680 5.12316 5.16845 5.21444 5.26972 5.29840 5.40526 5.48051 5.49699 5.58793 5.65274 5.75078 5.77383 5.94799 6.32678 6.45378 6.46649 6.99629 7.08749 7.16116 7.83697 8.41049 9.14900 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016844 B = 0.002739 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.888677 B =10219.325027 C =10642.438023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.041 4.041 3 Si 0.957 3.043 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.298 1.298 7 C -0.251 4.251 8 H 0.063 0.937 9 N -0.582 5.582 10 C 0.144 3.856 11 C 0.075 3.925 12 O -0.576 6.576 13 C 0.181 3.819 14 H 0.033 0.967 15 C -0.112 4.112 16 C -0.119 4.119 17 C 0.083 3.917 18 N -0.601 5.601 19 C 0.577 3.423 20 O -0.586 6.586 21 C -0.058 4.058 22 C -0.110 4.110 23 C -0.216 4.216 24 C 0.024 3.976 25 N -0.515 5.515 26 H 0.428 0.572 27 C -0.038 4.038 28 C -0.107 4.107 29 C -0.052 4.052 30 C 0.123 3.877 31 H 0.251 0.749 32 H 0.013 0.987 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.381 0.619 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.108 0.892 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.130 0.870 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.106 0.894 48 H 0.071 0.929 49 H 0.078 0.922 50 H 0.059 0.941 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.280 -21.051 6.206 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.238 4.238 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.225 1.225 7 C -0.381 4.381 8 H 0.081 0.919 9 N -0.302 5.302 10 C 0.018 3.982 11 C -0.005 4.005 12 O -0.383 6.383 13 C 0.073 3.927 14 H 0.051 0.949 15 C -0.151 4.151 16 C -0.158 4.158 17 C -0.039 4.039 18 N -0.333 5.333 19 C 0.367 3.633 20 O -0.467 6.467 21 C -0.170 4.170 22 C -0.137 4.137 23 C -0.222 4.222 24 C -0.094 4.094 25 N -0.118 5.118 26 H 0.274 0.726 27 C -0.076 4.076 28 C -0.144 4.144 29 C -0.089 4.089 30 C -0.001 4.001 31 H 0.060 0.940 32 H 0.032 0.968 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.229 0.771 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.127 0.873 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.124 0.876 43 H 0.148 0.852 44 H 0.114 0.886 45 H 0.118 0.882 46 H 0.100 0.900 47 H 0.124 0.876 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.078 0.922 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.429 -20.551 6.803 24.962 hybrid contribution -0.189 2.187 -0.907 2.375 sum 12.240 -18.364 5.896 22.843 Atomic orbital electron populations 1.70136 1.06968 1.25943 1.53578 1.25873 0.95571 1.01587 1.00751 0.85384 0.79095 0.80372 0.76632 1.18796 1.21546 1.22533 1.19191 0.94126 0.86101 1.38674 0.91925 1.43893 1.50580 1.03042 1.32704 1.20996 0.90859 1.00570 0.85817 1.22691 0.96386 0.83336 0.98060 1.86525 1.74137 1.32034 1.45567 1.20593 0.95686 0.87680 0.88758 0.94893 1.21770 0.96076 0.96133 1.01101 1.21848 1.03302 0.97200 0.93404 1.22567 0.81443 1.00942 0.98935 1.48247 1.13476 1.24613 1.46921 1.17611 0.84499 0.82473 0.78698 1.90803 1.21392 1.69202 1.65294 1.19737 0.84939 0.97913 1.14395 1.20802 0.98787 0.92867 1.01232 1.20696 0.93336 0.99973 1.08165 1.22129 0.99661 0.87245 1.00395 1.42176 1.07264 1.16097 1.46274 0.72555 1.20939 0.96184 0.89770 1.00728 1.22374 0.92219 0.95527 1.04309 1.20612 0.98774 0.89905 0.99653 1.21900 0.99040 0.84201 0.94937 0.94007 0.96828 0.90123 0.93618 0.94767 0.77128 0.91407 0.92967 0.87330 0.92500 0.89134 0.87568 0.85185 0.88556 0.88239 0.90029 0.87606 0.91051 0.90325 0.92240 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.12 11.41 21.65 0.25 -53.87 16 2 C -0.04 -2.23 4.96 84.86 0.42 -1.81 16 3 Si 0.96 43.88 29.61 68.60 2.03 45.91 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.25 -13.19 8.01 84.04 0.67 -12.52 16 8 H 0.06 3.24 7.04 -2.91 -0.02 3.22 16 9 N -0.58 -28.88 2.34 -677.59 -1.58 -30.47 16 10 C 0.14 7.02 5.68 86.38 0.49 7.51 16 11 C 0.07 2.91 7.39 71.98 0.53 3.45 16 12 O -0.58 -19.99 12.16 -148.98 -1.81 -21.80 16 13 C 0.18 7.92 2.39 45.07 0.11 8.02 16 14 H 0.03 1.56 7.77 -2.39 -0.02 1.54 16 15 C -0.11 -3.87 5.17 30.62 0.16 -3.71 16 16 C -0.12 -3.02 6.08 30.67 0.19 -2.84 16 17 C 0.08 2.07 5.57 86.36 0.48 2.55 16 18 N -0.60 -21.95 2.97 -823.64 -2.45 -24.40 16 19 C 0.58 22.97 7.64 86.45 0.66 23.63 16 20 O -0.59 -29.20 16.39 -4.33 -0.07 -29.27 16 21 C -0.06 -1.82 6.46 40.34 0.26 -1.56 16 22 C -0.11 -3.33 10.74 22.61 0.24 -3.09 16 23 C -0.22 -4.92 6.89 -19.88 -0.14 -5.06 16 24 C 0.02 0.45 8.01 41.49 0.33 0.78 16 25 N -0.51 -11.26 4.82 -171.11 -0.82 -12.08 16 26 H 0.43 7.08 6.14 -92.71 -0.57 6.51 16 27 C -0.04 -0.36 6.79 30.58 0.21 -0.15 16 28 C -0.11 -0.85 7.12 31.55 0.22 -0.62 16 29 C -0.05 -0.75 6.79 30.54 0.21 -0.54 16 30 C 0.12 5.61 5.71 86.36 0.49 6.10 16 31 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.01 0.67 7.89 -2.39 -0.02 0.65 16 33 H 0.08 4.42 5.45 -2.39 -0.01 4.40 16 34 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.38 8.96 9.12 -74.06 -0.68 8.29 16 37 H 0.07 2.41 7.06 -2.39 -0.02 2.39 16 38 H 0.05 1.88 7.19 -2.39 -0.02 1.86 16 39 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.11 2.11 3.66 -2.39 -0.01 2.10 16 43 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 44 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.07 1.00 8.14 -2.38 -0.02 0.99 16 49 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.06 2.85 7.41 -2.39 -0.02 2.83 16 51 H 0.04 2.21 7.01 -2.39 -0.02 2.19 16 Total: -1.00 -77.06 394.07 0.80 -76.26 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: -0.28 Total: 29.55 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 5.54 Total: 20.16 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -4.61 Total: -120.81 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -1.88 Total: -51.06 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -77.06 0.80 -76.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707214702.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.942 kcal (2) G-P(sol) polarization free energy of solvation -77.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds