Wall clock time and date at job start Wed Apr 1 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00403 * 2 1 4 4 H 1.48498 * 109.47126 * 271.97558 * 3 2 1 5 5 H 1.48497 * 109.46788 * 31.97518 * 3 2 1 6 6 H 1.48500 * 109.47143 * 151.97950 * 3 2 1 7 7 C 1.38816 * 119.99382 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00199 * 339.44177 * 7 2 1 9 9 N 1.36938 * 119.99656 * 159.44214 * 7 2 1 10 10 C 1.47073 * 120.88292 * 333.50750 * 9 7 2 11 11 C 1.53246 * 108.52178 * 231.16075 * 10 9 7 12 12 N 1.46891 * 109.34361 * 306.17035 * 11 10 9 13 13 C 1.46890 * 111.00410 * 187.25243 * 12 11 10 14 14 C 1.53005 * 109.47489 * 170.00152 * 13 12 11 15 15 N 1.46493 * 109.47103 * 180.02562 * 14 13 12 16 16 C 1.34782 * 119.99956 * 180.02562 * 15 14 13 17 17 O 1.21695 * 120.00049 * 359.97438 * 16 15 14 18 18 C 1.46655 * 119.99973 * 180.02562 * 16 15 14 19 19 C 1.36771 * 125.95662 * 179.71267 * 18 16 15 20 20 C 1.39654 * 106.53751 * 179.90789 * 19 18 16 21 21 C 1.35577 * 107.41197 * 0.40243 * 20 19 18 22 22 O 1.33499 * 108.60750 * 359.69612 * 21 20 19 23 23 C 1.50994 * 123.79484 * 179.61197 * 21 20 19 24 24 C 1.53324 * 108.41894 * 343.27998 * 23 21 20 25 25 C 1.53118 * 109.55310 * 50.16933 * 24 23 21 26 26 C 1.50693 * 128.12981 * 180.21491 * 20 19 18 27 27 C 1.46900 * 111.26750 * 63.10243 * 12 11 10 28 28 C 1.47086 * 120.88062 * 153.48823 * 9 7 2 29 29 H 0.97005 * 119.99601 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.62967 * 111.45625 * 10 9 7 31 31 H 1.09002 * 109.79305 * 350.96820 * 10 9 7 32 32 H 1.09000 * 109.49458 * 186.20549 * 11 10 9 33 33 H 1.09000 * 109.48668 * 66.13568 * 11 10 9 34 34 H 1.08995 * 109.47322 * 49.99638 * 13 12 11 35 35 H 1.09005 * 109.47079 * 290.00307 * 13 12 11 36 36 H 1.09001 * 109.46940 * 60.00076 * 14 13 12 37 37 H 1.08998 * 109.46837 * 299.99918 * 14 13 12 38 38 H 0.97003 * 120.00464 * 359.97438 * 15 14 13 39 39 H 1.07999 * 126.73148 * 0.03451 * 19 18 16 40 40 H 1.09007 * 109.67259 * 103.00824 * 23 21 20 41 41 H 1.09002 * 109.67546 * 223.50830 * 23 21 20 42 42 H 1.09002 * 109.45657 * 170.19336 * 24 23 21 43 43 H 1.08992 * 109.45424 * 290.14704 * 24 23 21 44 44 H 1.09000 * 109.47445 * 49.75422 * 25 24 23 45 45 H 1.08992 * 109.47798 * 169.77744 * 25 24 23 46 46 H 1.08999 * 109.68356 * 44.13398 * 26 20 19 47 47 H 1.09003 * 109.71200 * 283.59814 * 26 20 19 48 48 H 1.09000 * 109.49422 * 56.85569 * 27 12 11 49 49 H 1.08998 * 109.49537 * 176.93809 * 27 12 11 50 50 H 1.09007 * 109.62356 * 248.54747 * 28 9 7 51 51 H 1.08996 * 109.62471 * 9.12128 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4560 2.0705 -1.3992 5 1 1.4693 2.6401 0.7414 6 1 3.5681 1.4283 0.6577 7 6 2.0101 -1.2023 -0.0005 8 1 1.5216 -2.1079 0.3275 9 7 3.3141 -1.2399 -0.4170 10 6 3.8306 -0.2475 -1.3717 11 6 4.5271 -0.9902 -2.5169 12 7 5.5361 -1.9026 -1.9627 13 6 6.3437 -2.5061 -3.0309 14 6 7.5323 -3.2471 -2.4152 15 7 8.3380 -3.8484 -3.4806 16 6 9.4432 -4.5556 -3.1723 17 8 9.7720 -4.6942 -2.0089 18 6 10.2501 -5.1572 -4.2390 19 6 11.3915 -5.8905 -4.0661 20 6 11.8216 -6.2631 -5.3415 21 6 10.9436 -5.7427 -6.2339 22 8 9.9988 -5.0787 -5.5642 23 6 11.0642 -5.9151 -7.7291 24 6 12.4924 -6.3711 -8.0505 25 6 12.8627 -7.5614 -7.1614 26 6 13.0293 -7.0842 -5.7132 27 6 4.9159 -2.9366 -1.1235 28 6 4.2354 -2.2737 0.0789 29 1 -0.4850 0.8401 -0.0004 30 1 4.5453 0.4053 -0.8705 31 1 3.0073 0.3469 -1.7679 32 1 5.0111 -0.2699 -3.1764 33 1 3.7901 -1.5621 -3.0808 34 1 6.7084 -1.7240 -3.6967 35 1 5.7313 -3.2083 -3.5967 36 1 7.1675 -4.0293 -1.7495 37 1 8.1446 -2.5448 -1.8494 38 1 8.0758 -3.7383 -4.4080 39 1 11.8660 -6.1354 -3.1273 40 1 10.3532 -6.6677 -8.0702 41 1 10.8608 -4.9663 -8.2256 42 1 12.5518 -6.6678 -9.0977 43 1 13.1856 -5.5505 -7.8659 44 1 12.0719 -8.3101 -7.2086 45 1 13.7983 -7.9983 -7.5101 46 1 13.1062 -7.9454 -5.0494 47 1 13.9287 -6.4742 -5.6289 48 1 4.1735 -3.4814 -1.7068 49 1 5.6819 -3.6278 -0.7723 50 1 4.9890 -1.8156 0.7195 51 1 3.6774 -3.0216 0.6422 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713806424.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:35 Heat of formation + Delta-G solvation = 5.973827 kcal Electronic energy + Delta-G solvation = -29822.702023 eV Core-core repulsion = 25724.114288 eV Total energy + Delta-G solvation = -4098.587735 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.22197 -39.76485 -38.46865 -37.64912 -35.71572 -34.15784 -33.46591 -31.66343 -30.77859 -30.56160 -30.10482 -28.83663 -26.24426 -24.60535 -23.64124 -23.19394 -22.56233 -22.15586 -21.58845 -21.04706 -19.56850 -19.32845 -18.16854 -16.99806 -16.93858 -16.38002 -16.23170 -15.68544 -15.43170 -15.17933 -14.73149 -14.61289 -14.41868 -14.12656 -14.06674 -14.04584 -13.88088 -13.68050 -13.34051 -13.26641 -13.01995 -12.94960 -12.70927 -12.47272 -12.11751 -11.77600 -11.67057 -11.49042 -11.44583 -11.40230 -11.12655 -10.89546 -10.60967 -10.57633 -10.31857 -10.07375 -10.06665 -9.83166 -9.46002 -9.35036 -8.70916 -8.64938 -8.09178 -6.96047 -5.93991 -3.29228 0.70927 1.91406 2.17814 2.83531 2.92122 3.32674 3.50382 3.55171 4.02171 4.12865 4.25000 4.26961 4.33457 4.54396 4.55314 4.64486 4.80701 4.86123 4.90519 4.94094 4.96092 5.02654 5.19100 5.25344 5.31732 5.31908 5.38543 5.39841 5.51250 5.57663 5.61013 5.62570 5.69134 5.71318 5.75865 5.86396 5.92486 6.00823 6.05235 6.06237 6.10389 6.21058 6.37563 6.51486 6.57135 6.65298 6.88218 7.16882 7.32727 7.38825 7.81934 7.94861 8.33188 8.93756 9.72554 10.11833 11.22014 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.031307 B = 0.001652 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.143720 B =16950.184746 C =17307.318051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.259 4.259 8 H 0.086 0.914 9 N -0.608 5.608 10 C 0.130 3.870 11 C 0.045 3.955 12 N -0.530 5.530 13 C 0.044 3.956 14 C 0.120 3.880 15 N -0.718 5.718 16 C 0.604 3.396 17 O -0.518 6.518 18 C -0.082 4.082 19 C -0.108 4.108 20 C -0.191 4.191 21 C 0.018 3.982 22 O -0.157 6.157 23 C -0.041 4.041 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.051 4.051 27 C 0.036 3.964 28 C 0.151 3.849 29 H 0.262 0.738 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.404 0.596 39 H 0.160 0.840 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.034 0.966 49 H 0.070 0.930 50 H 0.032 0.968 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.180 -14.088 -18.694 35.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.177 4.177 3 Si 0.714 3.286 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.387 4.387 8 H 0.103 0.897 9 N -0.333 5.333 10 C 0.004 3.996 11 C -0.084 4.084 12 N -0.256 5.256 13 C -0.085 4.085 14 C -0.003 4.003 15 N -0.369 5.369 16 C 0.390 3.610 17 O -0.395 6.395 18 C -0.134 4.134 19 C -0.129 4.129 20 C -0.192 4.192 21 C -0.035 4.035 22 O -0.053 6.053 23 C -0.078 4.078 24 C -0.154 4.154 25 C -0.161 4.161 26 C -0.088 4.088 27 C -0.093 4.093 28 C 0.025 3.975 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.238 0.762 39 H 0.178 0.822 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.053 0.947 49 H 0.088 0.912 50 H 0.050 0.950 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 27.254 -13.642 -17.618 35.203 hybrid contribution -0.259 0.567 -0.867 1.068 sum 26.995 -13.075 -18.485 35.233 Atomic orbital electron populations 1.69839 1.05721 1.26532 1.53191 1.25266 0.95250 0.97609 0.99596 0.86946 0.80040 0.84522 0.77046 1.21668 1.23171 1.19420 1.18937 0.84782 0.94821 1.40184 0.89670 1.44414 1.08515 1.32155 1.48177 1.21435 0.96530 0.91993 0.89669 1.22651 0.92629 0.95338 0.97795 1.61830 1.24739 1.18906 1.20105 1.22202 0.94233 0.97918 0.94122 1.21463 0.91985 0.97560 0.89268 1.45843 1.26271 1.53485 1.11291 1.16476 0.80038 0.78320 0.86194 1.90908 1.70337 1.60542 1.17756 1.22089 1.00989 1.09346 0.80947 1.21609 0.94673 0.97628 0.98964 1.20171 1.00909 1.06002 0.92132 1.22746 0.88987 0.96301 0.95443 1.83884 1.44924 1.58825 1.17647 1.20354 0.98943 1.03248 0.85258 1.21603 0.94748 0.98816 1.00245 1.21653 1.02292 0.97765 0.94377 1.20105 0.94022 0.98172 0.96484 1.22758 0.96946 0.93145 0.96411 1.21013 0.92091 0.91620 0.92748 0.92796 0.94865 0.90661 0.91547 0.94480 0.90476 0.94520 0.90706 0.89996 0.76163 0.82187 0.89038 0.89283 0.90193 0.91038 0.91374 0.90889 0.90427 0.90538 0.94723 0.91178 0.95025 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.03 13.97 55.49 0.78 -27.25 16 2 C 0.02 0.63 5.24 -17.43 -0.09 0.53 16 3 Si 0.88 22.59 24.31 -169.99 -4.13 18.46 16 4 H -0.29 -7.05 6.58 56.52 0.37 -6.68 16 5 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16 6 H -0.27 -6.84 6.61 56.52 0.37 -6.47 16 7 C -0.26 -7.31 10.08 -15.06 -0.15 -7.46 16 8 H 0.09 2.56 8.05 -52.49 -0.42 2.13 16 9 N -0.61 -14.70 2.82 -172.01 -0.48 -15.18 16 10 C 0.13 2.86 4.35 -3.60 -0.02 2.85 16 11 C 0.05 0.80 5.62 -3.70 -0.02 0.78 16 12 N -0.53 -8.57 4.63 -234.33 -1.08 -9.65 16 13 C 0.04 0.55 5.08 -3.83 -0.02 0.53 16 14 C 0.12 1.46 5.61 -4.04 -0.02 1.44 16 15 N -0.72 -7.82 5.55 -61.63 -0.34 -8.16 16 16 C 0.60 7.72 7.79 -12.86 -0.10 7.62 16 17 O -0.52 -8.26 16.86 5.19 0.09 -8.18 16 18 C -0.08 -0.92 7.14 -36.72 -0.26 -1.18 16 19 C -0.11 -1.10 10.60 -39.58 -0.42 -1.52 16 20 C -0.19 -1.60 5.93 -105.05 -0.62 -2.22 16 21 C 0.02 0.15 7.22 -35.12 -0.25 -0.10 16 22 O -0.16 -1.56 10.39 5.55 0.06 -1.51 16 23 C -0.04 -0.19 6.30 -27.57 -0.17 -0.37 16 24 C -0.12 -0.40 5.89 -26.50 -0.16 -0.56 16 25 C -0.12 -0.48 5.91 -26.47 -0.16 -0.63 16 26 C -0.05 -0.28 6.28 -27.69 -0.17 -0.45 16 27 C 0.04 0.61 5.46 -3.70 -0.02 0.59 16 28 C 0.15 3.05 6.69 -3.60 -0.02 3.03 16 29 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.03 0.75 6.94 -51.93 -0.36 0.39 16 31 H 0.08 1.79 4.61 -51.93 -0.24 1.56 16 32 H 0.07 1.02 7.99 -51.93 -0.41 0.60 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.86 7.97 -51.93 -0.41 0.44 16 35 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.07 0.98 6.40 -51.93 -0.33 0.65 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.40 3.52 8.23 -40.82 -0.34 3.18 16 39 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.09 0.34 8.14 -51.92 -0.42 -0.08 16 41 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.07 0.27 8.11 -51.93 -0.42 -0.15 16 44 H 0.07 0.28 8.11 -51.93 -0.42 -0.14 16 45 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.07 1.02 6.16 -51.93 -0.32 0.70 16 50 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.07 1.31 7.95 -51.93 -0.41 0.89 16 LS Contribution 396.44 15.07 5.97 5.97 Total: -1.00 -33.79 396.44 -10.19 -43.98 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -8.36 Total: -1.34 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -2.68 Total: 2.86 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -1.14 Total: -60.25 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.15 Total: -9.68 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.13 Total: 18.46 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.79 -10.19 -43.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713806424.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.957 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds