Wall clock time and date at job start Wed Apr 1 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00403 * 2 1 4 4 H 1.48498 * 109.47126 * 271.97558 * 3 2 1 5 5 H 1.48497 * 109.46788 * 31.97518 * 3 2 1 6 6 H 1.48500 * 109.47143 * 151.97950 * 3 2 1 7 7 C 1.38816 * 119.99382 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00199 * 339.44177 * 7 2 1 9 9 N 1.36938 * 119.99656 * 159.44214 * 7 2 1 10 10 C 1.47073 * 120.88292 * 333.50750 * 9 7 2 11 11 C 1.53246 * 108.52178 * 231.16075 * 10 9 7 12 12 N 1.46891 * 109.34361 * 306.17035 * 11 10 9 13 13 C 1.46890 * 111.00410 * 187.25243 * 12 11 10 14 14 C 1.53005 * 109.47489 * 170.00152 * 13 12 11 15 15 N 1.46493 * 109.47103 * 180.02562 * 14 13 12 16 16 C 1.34782 * 119.99956 * 180.02562 * 15 14 13 17 17 O 1.21695 * 120.00049 * 359.97438 * 16 15 14 18 18 C 1.46655 * 119.99973 * 180.02562 * 16 15 14 19 19 C 1.36771 * 125.95662 * 179.71267 * 18 16 15 20 20 C 1.39654 * 106.53751 * 179.90789 * 19 18 16 21 21 C 1.35577 * 107.41197 * 0.40243 * 20 19 18 22 22 O 1.33499 * 108.60750 * 359.69612 * 21 20 19 23 23 C 1.50994 * 123.79484 * 179.61197 * 21 20 19 24 24 C 1.53324 * 108.41894 * 343.27998 * 23 21 20 25 25 C 1.53118 * 109.55310 * 50.16933 * 24 23 21 26 26 C 1.50693 * 128.12981 * 180.21491 * 20 19 18 27 27 C 1.46900 * 111.26750 * 63.10243 * 12 11 10 28 28 C 1.47086 * 120.88062 * 153.48823 * 9 7 2 29 29 H 0.97005 * 119.99601 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.62967 * 111.45625 * 10 9 7 31 31 H 1.09002 * 109.79305 * 350.96820 * 10 9 7 32 32 H 1.09000 * 109.49458 * 186.20549 * 11 10 9 33 33 H 1.09000 * 109.48668 * 66.13568 * 11 10 9 34 34 H 1.08995 * 109.47322 * 49.99638 * 13 12 11 35 35 H 1.09005 * 109.47079 * 290.00307 * 13 12 11 36 36 H 1.09001 * 109.46940 * 60.00076 * 14 13 12 37 37 H 1.08998 * 109.46837 * 299.99918 * 14 13 12 38 38 H 0.97003 * 120.00464 * 359.97438 * 15 14 13 39 39 H 1.07999 * 126.73148 * 0.03451 * 19 18 16 40 40 H 1.09007 * 109.67259 * 103.00824 * 23 21 20 41 41 H 1.09002 * 109.67546 * 223.50830 * 23 21 20 42 42 H 1.09002 * 109.45657 * 170.19336 * 24 23 21 43 43 H 1.08992 * 109.45424 * 290.14704 * 24 23 21 44 44 H 1.09000 * 109.47445 * 49.75422 * 25 24 23 45 45 H 1.08992 * 109.47798 * 169.77744 * 25 24 23 46 46 H 1.08999 * 109.68356 * 44.13398 * 26 20 19 47 47 H 1.09003 * 109.71200 * 283.59814 * 26 20 19 48 48 H 1.09000 * 109.49422 * 56.85569 * 27 12 11 49 49 H 1.08998 * 109.49537 * 176.93809 * 27 12 11 50 50 H 1.09007 * 109.62356 * 248.54747 * 28 9 7 51 51 H 1.08996 * 109.62471 * 9.12128 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4560 2.0705 -1.3992 5 1 1.4693 2.6401 0.7414 6 1 3.5681 1.4283 0.6577 7 6 2.0101 -1.2023 -0.0005 8 1 1.5216 -2.1079 0.3275 9 7 3.3141 -1.2399 -0.4170 10 6 3.8306 -0.2475 -1.3717 11 6 4.5271 -0.9902 -2.5169 12 7 5.5361 -1.9026 -1.9627 13 6 6.3437 -2.5061 -3.0309 14 6 7.5323 -3.2471 -2.4152 15 7 8.3380 -3.8484 -3.4806 16 6 9.4432 -4.5556 -3.1723 17 8 9.7720 -4.6942 -2.0089 18 6 10.2501 -5.1572 -4.2390 19 6 11.3915 -5.8905 -4.0661 20 6 11.8216 -6.2631 -5.3415 21 6 10.9436 -5.7427 -6.2339 22 8 9.9988 -5.0787 -5.5642 23 6 11.0642 -5.9151 -7.7291 24 6 12.4924 -6.3711 -8.0505 25 6 12.8627 -7.5614 -7.1614 26 6 13.0293 -7.0842 -5.7132 27 6 4.9159 -2.9366 -1.1235 28 6 4.2354 -2.2737 0.0789 29 1 -0.4850 0.8401 -0.0004 30 1 4.5453 0.4053 -0.8705 31 1 3.0073 0.3469 -1.7679 32 1 5.0111 -0.2699 -3.1764 33 1 3.7901 -1.5621 -3.0808 34 1 6.7084 -1.7240 -3.6967 35 1 5.7313 -3.2083 -3.5967 36 1 7.1675 -4.0293 -1.7495 37 1 8.1446 -2.5448 -1.8494 38 1 8.0758 -3.7383 -4.4080 39 1 11.8660 -6.1354 -3.1273 40 1 10.3532 -6.6677 -8.0702 41 1 10.8608 -4.9663 -8.2256 42 1 12.5518 -6.6678 -9.0977 43 1 13.1856 -5.5505 -7.8659 44 1 12.0719 -8.3101 -7.2086 45 1 13.7983 -7.9983 -7.5101 46 1 13.1062 -7.9454 -5.0494 47 1 13.9287 -6.4742 -5.6289 48 1 4.1735 -3.4814 -1.7068 49 1 5.6819 -3.6278 -0.7723 50 1 4.9890 -1.8156 0.7195 51 1 3.6774 -3.0216 0.6422 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713806424.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:34 Heat of formation + Delta-G solvation = -17.876364 kcal Electronic energy + Delta-G solvation = -29823.736245 eV Core-core repulsion = 25724.114288 eV Total energy + Delta-G solvation = -4099.621957 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.91504 -40.77412 -39.88709 -38.07322 -37.06870 -35.56326 -34.10307 -33.64861 -32.09371 -31.33222 -30.99536 -29.87251 -27.72784 -25.51713 -25.08582 -24.18929 -23.67182 -22.98250 -22.66594 -21.82603 -21.07369 -20.08494 -18.92498 -18.83356 -17.69568 -17.48620 -17.20677 -16.97159 -16.65877 -16.01488 -15.91653 -15.79438 -15.70602 -15.50725 -15.22584 -14.84184 -14.75461 -14.53881 -14.44065 -14.33710 -14.07539 -13.85829 -13.78057 -13.51842 -13.43824 -13.09083 -13.04790 -12.61824 -12.55435 -12.22015 -12.12150 -11.79393 -11.77666 -11.75194 -11.72577 -11.53820 -11.46600 -11.43607 -10.77227 -10.73904 -10.31976 -9.44079 -9.37834 -8.92113 -8.17792 -5.49519 -0.08353 1.23724 1.28917 1.42013 1.43949 1.51871 1.95849 2.01088 2.40729 2.92559 3.07259 3.34114 3.46654 3.69758 3.74214 3.77863 3.99372 4.00088 4.11145 4.12928 4.17692 4.20428 4.37764 4.38551 4.43070 4.47130 4.49037 4.55863 4.58877 4.67716 4.68633 4.76728 4.83306 4.87755 4.89261 4.92106 4.98702 5.00708 5.01898 5.06846 5.15161 5.20007 5.21961 5.26865 5.44305 5.50089 5.80089 5.81169 6.01760 6.04619 6.14848 6.33121 6.88232 6.90515 7.59495 8.02008 9.02032 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.031307 B = 0.001652 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.143720 B =16950.184746 C =17307.318051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.035 4.035 3 Si 0.949 3.051 4 H -0.269 1.269 5 H -0.311 1.311 6 H -0.266 1.266 7 C -0.251 4.251 8 H 0.052 0.948 9 N -0.623 5.623 10 C 0.123 3.877 11 C 0.056 3.944 12 N -0.538 5.538 13 C 0.053 3.947 14 C 0.129 3.871 15 N -0.705 5.705 16 C 0.604 3.396 17 O -0.559 6.559 18 C -0.108 4.108 19 C -0.114 4.114 20 C -0.202 4.202 21 C 0.022 3.978 22 O -0.161 6.161 23 C -0.043 4.043 24 C -0.114 4.114 25 C -0.122 4.122 26 C -0.052 4.052 27 C 0.048 3.952 28 C 0.145 3.855 29 H 0.262 0.738 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.029 0.971 34 H 0.099 0.901 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.416 0.584 39 H 0.159 0.841 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.026 0.974 49 H 0.095 0.905 50 H 0.035 0.965 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.046 -14.277 -21.679 39.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.230 4.230 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.240 1.240 6 H -0.191 1.191 7 C -0.380 4.380 8 H 0.069 0.931 9 N -0.348 5.348 10 C -0.002 4.002 11 C -0.074 4.074 12 N -0.263 5.263 13 C -0.076 4.076 14 C 0.005 3.995 15 N -0.356 5.356 16 C 0.391 3.609 17 O -0.440 6.440 18 C -0.160 4.160 19 C -0.134 4.134 20 C -0.203 4.203 21 C -0.031 4.031 22 O -0.057 6.057 23 C -0.079 4.079 24 C -0.152 4.152 25 C -0.159 4.159 26 C -0.090 4.090 27 C -0.081 4.081 28 C 0.020 3.980 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.047 0.953 34 H 0.117 0.883 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.253 0.747 39 H 0.177 0.823 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.100 0.900 48 H 0.044 0.956 49 H 0.113 0.887 50 H 0.053 0.947 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 30.161 -13.842 -20.655 39.088 hybrid contribution -1.083 0.489 0.022 1.188 sum 29.078 -13.353 -20.633 38.073 Atomic orbital electron populations 1.69966 1.07369 1.27249 1.55707 1.25886 0.95862 1.00949 1.00282 0.85886 0.78361 0.80040 0.77896 1.19490 1.23954 1.19118 1.18879 0.86569 0.93656 1.38924 0.93053 1.44550 1.07689 1.33455 1.49142 1.21481 0.96135 0.92008 0.90615 1.22451 0.92895 0.95911 0.96094 1.61750 1.24118 1.18952 1.21474 1.22184 0.93514 0.98699 0.93157 1.21273 0.91819 0.96996 0.89379 1.45679 1.25532 1.52681 1.11729 1.16644 0.80187 0.78006 0.86035 1.90876 1.71478 1.62215 1.19419 1.21795 1.01691 1.11084 0.81385 1.21846 0.94469 0.97173 0.99955 1.20523 1.02050 1.06446 0.91296 1.23573 0.87889 0.94607 0.97029 1.83868 1.45571 1.59260 1.17034 1.20625 1.00258 1.04402 0.82657 1.21641 0.93668 0.98494 1.01367 1.21671 1.03153 0.97944 0.93167 1.20221 0.92941 0.97926 0.97862 1.22565 0.97225 0.93191 0.95093 1.21176 0.91578 0.90776 0.94454 0.92912 0.94734 0.92596 0.88225 0.95287 0.88269 0.93450 0.91665 0.91033 0.74684 0.82291 0.87652 0.88050 0.87987 0.91244 0.91528 0.89258 0.90231 0.89957 0.95555 0.88700 0.94653 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.67 13.97 21.65 0.30 -60.37 16 2 C -0.04 -2.08 5.24 84.86 0.45 -1.63 16 3 Si 0.95 47.19 24.31 68.60 1.67 48.86 16 4 H -0.27 -12.35 6.58 99.48 0.65 -11.69 16 5 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 6 H -0.27 -12.96 6.61 99.48 0.66 -12.30 16 7 C -0.25 -14.52 10.08 84.03 0.85 -13.67 16 8 H 0.05 3.24 8.05 -2.91 -0.02 3.22 16 9 N -0.62 -30.04 2.82 -698.10 -1.97 -32.01 16 10 C 0.12 5.23 4.35 86.35 0.38 5.61 16 11 C 0.06 1.83 5.62 86.39 0.49 2.32 16 12 N -0.54 -15.92 4.63 -895.28 -4.14 -20.07 16 13 C 0.05 1.13 5.08 86.31 0.44 1.57 16 14 C 0.13 2.88 5.61 86.38 0.48 3.37 16 15 N -0.71 -14.28 5.55 -467.10 -2.59 -16.87 16 16 C 0.60 15.23 7.79 86.44 0.67 15.91 16 17 O -0.56 -18.08 16.86 -4.33 -0.07 -18.15 16 18 C -0.11 -2.39 7.14 24.13 0.17 -2.21 16 19 C -0.11 -2.30 10.60 22.27 0.24 -2.07 16 20 C -0.20 -3.13 5.93 -20.14 -0.12 -3.25 16 21 C 0.02 0.32 7.22 25.16 0.18 0.50 16 22 O -0.16 -3.00 10.39 -3.07 -0.03 -3.03 16 23 C -0.04 -0.28 6.30 30.05 0.19 -0.09 16 24 C -0.11 -0.42 5.89 30.74 0.18 -0.24 16 25 C -0.12 -0.61 5.91 30.76 0.18 -0.43 16 26 C -0.05 -0.49 6.28 29.98 0.19 -0.30 16 27 C 0.05 1.55 5.46 86.38 0.47 2.02 16 28 C 0.15 5.80 6.69 86.35 0.58 6.37 16 29 H 0.26 15.76 8.31 -92.70 -0.77 14.98 16 30 H 0.03 1.48 6.94 -2.39 -0.02 1.46 16 31 H 0.06 2.59 4.61 -2.39 -0.01 2.58 16 32 H 0.10 2.64 7.99 -2.39 -0.02 2.62 16 33 H 0.03 1.00 8.14 -2.39 -0.02 0.99 16 34 H 0.10 1.76 7.97 -2.39 -0.02 1.75 16 35 H 0.05 0.97 8.12 -2.38 -0.02 0.95 16 36 H 0.07 1.60 6.40 -2.39 -0.02 1.59 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.42 6.33 8.23 -92.71 -0.76 5.56 16 39 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 40 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 41 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.07 0.31 8.11 -2.39 -0.02 0.29 16 44 H 0.07 0.37 8.11 -2.39 -0.02 0.35 16 45 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.09 2.59 6.16 -2.39 -0.01 2.57 16 50 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 51 H 0.06 2.43 7.95 -2.39 -0.02 2.41 16 Total: -1.00 -75.35 396.44 -0.76 -76.11 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.07 Total: 11.75 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 6.01 Total: 13.78 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -8.40 Total: -129.32 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.10 Total: -21.18 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.67 Total: 48.86 kcal Total: -75.35 -0.76 -76.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713806424.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.237 kcal (2) G-P(sol) polarization free energy of solvation -75.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds