Wall clock time and date at job start Wed Apr 1 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86793 * 120.00077 * 2 1 4 4 H 1.48506 * 109.46981 * 239.99903 * 3 2 1 5 5 H 1.48493 * 109.47408 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47449 * 120.00264 * 3 2 1 7 7 C 1.38954 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99835 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99671 * 359.97438 * 7 2 1 10 10 C 1.34786 * 119.99930 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99496 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00208 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47030 * 174.33779 * 12 10 9 14 14 C 1.46815 * 110.99808 * 64.93187 * 13 12 10 15 15 C 1.53264 * 109.44681 * 170.79797 * 14 13 12 16 16 C 1.53222 * 108.61813 * 55.59056 * 15 14 13 17 17 C 1.52736 * 117.84116 * 162.98982 * 16 15 14 18 18 C 1.52763 * 117.78682 * 93.99672 * 16 15 14 19 19 H 1.09002 * 117.53074 * 215.27795 * 18 16 15 20 20 N 1.46501 * 117.50860 * 0.35481 * 18 16 15 21 21 C 1.34775 * 119.99914 * 204.93279 * 20 18 16 22 22 O 1.21280 * 120.00258 * 0.02562 * 21 20 18 23 23 C 1.50697 * 120.00005 * 180.02562 * 21 20 18 24 24 H 1.09003 * 115.55862 * 325.70461 * 23 21 20 25 25 C 1.52998 * 117.50302 * 111.39056 * 23 21 20 26 26 C 1.52993 * 117.50162 * 180.02562 * 23 21 20 27 27 C 1.52995 * 138.59217 * 121.61726 * 26 23 21 28 28 C 1.52993 * 138.58893 * 23.40044 * 26 23 21 29 29 C 1.53215 * 114.74574 * 308.58664 * 16 15 14 30 30 C 1.46814 * 111.00569 * 300.23518 * 13 12 10 31 31 H 0.97003 * 120.00011 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00483 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.46902 * 54.34595 * 12 10 9 34 34 H 1.08991 * 109.47230 * 294.34047 * 12 10 9 35 35 H 1.09004 * 109.47316 * 50.80674 * 14 13 12 36 36 H 1.08996 * 109.47565 * 290.79041 * 14 13 12 37 37 H 1.09002 * 109.61335 * 295.85914 * 15 14 13 38 38 H 1.08994 * 109.61495 * 175.33501 * 15 14 13 39 39 H 1.09005 * 117.49854 * 144.78473 * 17 16 15 40 40 H 1.09001 * 117.53325 * 359.73370 * 17 16 15 41 41 H 0.96997 * 120.00233 * 24.93507 * 20 18 16 42 42 H 1.09000 * 117.50430 * 214.98199 * 25 23 21 43 43 H 1.09005 * 117.49930 * 0.02562 * 25 23 21 44 44 H 1.09006 * 117.49808 * 336.59788 * 27 26 23 45 45 H 1.09001 * 117.50230 * 121.61633 * 27 26 23 46 46 H 1.09001 * 117.50206 * 238.38773 * 28 26 23 47 47 H 1.09003 * 117.49824 * 23.37994 * 28 26 23 48 48 H 1.09002 * 109.61353 * 171.15131 * 29 16 15 49 49 H 1.09002 * 109.61340 * 291.67861 * 29 16 15 50 50 H 1.09005 * 109.47247 * 309.19810 * 30 13 12 51 51 H 1.09007 * 109.47417 * 69.20046 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3232 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2436 -4.8630 -0.0010 13 7 2.1921 -5.9761 -0.1390 14 6 3.0799 -6.0585 1.0274 15 6 3.8938 -7.3554 0.9587 16 6 4.6384 -7.3952 -0.3798 17 6 5.8050 -8.3714 -0.5183 18 6 6.0718 -6.8682 -0.4133 19 1 6.3974 -6.3505 -1.3156 20 7 6.6382 -6.3676 0.8416 21 6 7.6373 -5.4633 0.8167 22 8 8.0671 -5.0636 -0.2446 23 6 8.2202 -4.9488 2.1076 24 1 7.5165 -4.8466 2.9337 25 6 9.6545 -5.3585 2.4480 26 6 9.3516 -3.9232 2.0126 27 6 9.6489 -2.4963 2.4775 28 6 9.8828 -2.8896 1.0176 29 6 3.7589 -7.1520 -1.6105 30 6 2.9530 -5.8672 -1.3899 31 1 -0.4850 0.8401 0.0004 32 1 0.3533 -2.3906 -0.0005 33 1 0.5422 -4.8779 -0.8353 34 1 0.6962 -4.9661 0.9358 35 1 2.4831 -6.0518 1.9395 36 1 3.7570 -5.2043 1.0298 37 1 3.2236 -8.2121 1.0301 38 1 4.6122 -7.3803 1.7780 39 1 5.9544 -8.8426 -1.4898 40 1 6.0513 -8.9880 0.3461 41 1 6.2942 -6.6869 1.6905 42 1 9.8944 -5.5260 3.4980 43 1 10.1766 -6.0000 1.7380 44 1 8.7982 -1.8501 2.6946 45 1 10.5273 -2.3439 3.1047 46 1 10.9151 -2.9960 0.6842 47 1 9.1862 -2.5026 0.2738 48 1 4.3879 -7.0422 -2.4939 49 1 3.0778 -7.9923 -1.7454 50 1 2.2646 -5.7223 -2.2225 51 1 3.6331 -5.0175 -1.3287 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752435035.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:17 Heat of formation + Delta-G solvation = 20.584480 kcal Electronic energy + Delta-G solvation = -31408.967329 eV Core-core repulsion = 27311.013159 eV Total energy + Delta-G solvation = -4097.954170 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.35676 -39.46563 -38.34340 -37.26111 -35.79192 -33.87900 -33.22986 -32.49350 -31.33874 -30.71783 -29.98694 -26.32734 -24.79673 -24.07739 -23.13042 -22.44312 -21.87917 -21.39044 -20.49963 -19.40144 -19.28146 -18.46555 -17.80892 -17.15328 -16.28705 -15.90157 -15.34421 -15.16158 -15.04672 -14.88563 -14.64601 -14.55799 -14.22606 -14.06492 -13.93187 -13.81416 -13.43162 -12.97379 -12.69598 -12.50537 -12.23778 -11.95053 -11.90788 -11.73738 -11.53522 -11.51041 -11.43486 -11.17735 -11.13539 -10.59319 -10.56260 -10.45241 -10.33166 -10.24869 -10.22482 -10.21652 -10.10653 -9.78368 -9.55931 -9.45976 -9.14654 -8.58371 -7.99061 -7.38266 -6.44955 -3.86088 2.47755 2.96710 3.16803 3.23267 3.27990 3.56490 3.70419 3.84192 3.88020 4.15297 4.17370 4.37997 4.60017 4.70294 4.72538 4.76325 4.85066 4.99291 5.00210 5.07359 5.21156 5.30777 5.38859 5.47495 5.50735 5.55538 5.56813 5.59219 5.67900 5.72842 5.76066 5.77827 5.89639 5.91714 5.92755 5.96562 6.03323 6.09306 6.11581 6.15278 6.22889 6.29893 6.33947 6.56479 6.64713 6.79779 7.41222 7.51439 7.51676 7.52679 8.01753 8.29718 8.56989 9.13914 9.50207 10.01311 10.71590 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007304 B = 0.003836 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3832.352212 B = 7297.598384 C =10438.725673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.025 3.975 3 Si 0.929 3.071 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.101 0.899 9 N -0.557 5.557 10 C 0.405 3.595 11 O -0.590 6.590 12 C 0.042 3.958 13 N -0.513 5.513 14 C 0.043 3.957 15 C -0.072 4.072 16 C -0.116 4.116 17 C -0.189 4.189 18 C 0.093 3.907 19 H 0.133 0.867 20 N -0.694 5.694 21 C 0.548 3.452 22 O -0.531 6.531 23 C -0.141 4.141 24 H 0.124 0.876 25 C -0.101 4.101 26 C -0.199 4.199 27 C -0.130 4.130 28 C -0.113 4.113 29 C -0.073 4.073 30 C 0.042 3.958 31 H 0.273 0.727 32 H 0.392 0.608 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.399 0.601 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.064 0.936 49 H 0.071 0.929 50 H 0.063 0.937 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.532 -14.968 4.686 19.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.177 4.177 3 Si 0.756 3.244 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.119 0.881 9 N -0.193 5.193 10 C 0.191 3.809 11 O -0.477 6.477 12 C -0.090 4.090 13 N -0.236 5.236 14 C -0.085 4.085 15 C -0.110 4.110 16 C -0.118 4.118 17 C -0.228 4.228 18 C -0.013 4.013 19 H 0.151 0.849 20 N -0.344 5.344 21 C 0.334 3.666 22 O -0.407 6.407 23 C -0.162 4.162 24 H 0.142 0.858 25 C -0.138 4.138 26 C -0.200 4.200 27 C -0.167 4.167 28 C -0.150 4.150 29 C -0.111 4.111 30 C -0.086 4.086 31 H 0.083 0.917 32 H 0.226 0.774 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.235 0.765 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.120 0.880 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.082 0.918 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.249 -14.926 3.898 19.698 hybrid contribution -0.229 1.426 0.523 1.537 sum 12.020 -13.500 4.422 18.608 Atomic orbital electron populations 1.69600 1.05939 1.28346 1.50146 1.25261 0.95600 0.99739 0.97133 0.85951 0.78832 0.80542 0.79124 1.19864 1.20876 1.19912 1.19651 0.93306 0.82438 1.47723 0.88130 1.42049 1.09253 1.04916 1.63068 1.21138 0.88901 0.85973 0.84908 1.90446 1.13803 1.86891 1.56555 1.22049 0.95510 0.88305 1.03170 1.62254 1.18615 1.40060 1.02693 1.22235 0.95969 0.97643 0.92614 1.21108 0.97532 0.98926 0.93447 1.21948 0.89385 1.02510 0.97945 1.23579 1.02962 0.92978 1.03281 1.21687 0.96299 0.94152 0.89121 0.84903 1.45271 1.36684 1.43965 1.08449 1.19603 0.79011 0.78089 0.89888 1.90686 1.60596 1.57498 1.31903 1.21939 0.92771 1.03776 0.97733 0.85798 1.22650 0.94450 0.94732 1.02009 1.21121 1.01669 0.88494 1.08691 1.22784 1.02819 0.93063 0.97993 1.22610 1.01504 0.98450 0.92408 1.21174 0.96990 0.98467 0.94425 1.22253 0.97150 0.97774 0.91396 0.91747 0.77434 0.89483 0.89464 0.91993 0.90572 0.91045 0.92581 0.88239 0.88796 0.76509 0.87674 0.88206 0.88280 0.88395 0.88630 0.87975 0.91747 0.91077 0.91807 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 9 N -0.56 -13.99 5.29 -10.96 -0.06 -14.05 16 10 C 0.41 9.29 7.19 -10.98 -0.08 9.21 16 11 O -0.59 -15.19 11.30 5.54 0.06 -15.13 16 12 C 0.04 0.73 5.82 -4.98 -0.03 0.71 16 13 N -0.51 -8.42 4.78 -235.88 -1.13 -9.54 16 14 C 0.04 0.68 5.05 -3.73 -0.02 0.67 16 15 C -0.07 -0.89 5.67 -26.48 -0.15 -1.04 16 16 C -0.12 -1.45 2.02 -154.54 -0.31 -1.77 16 17 C -0.19 -1.99 9.92 -26.85 -0.27 -2.25 16 18 C 0.09 1.25 6.10 -68.04 -0.42 0.84 16 19 H 0.13 2.10 7.40 -51.93 -0.38 1.71 16 20 N -0.69 -8.94 5.35 -53.91 -0.29 -9.23 16 21 C 0.55 8.19 7.61 -10.99 -0.08 8.11 16 22 O -0.53 -9.96 15.81 5.56 0.09 -9.87 16 23 C -0.14 -1.70 6.19 -91.78 -0.57 -2.27 16 24 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 25 C -0.10 -0.99 10.24 -26.72 -0.27 -1.26 16 26 C -0.20 -2.42 5.05 -154.51 -0.78 -3.20 16 27 C -0.13 -1.39 10.53 -26.73 -0.28 -1.67 16 28 C -0.11 -1.40 10.16 -26.74 -0.27 -1.67 16 29 C -0.07 -0.96 5.87 -26.49 -0.16 -1.12 16 30 C 0.04 0.70 4.96 -3.74 -0.02 0.68 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 33 H 0.09 1.42 8.13 -51.93 -0.42 0.99 16 34 H 0.09 1.41 8.04 -51.93 -0.42 0.99 16 35 H 0.06 0.93 8.02 -51.93 -0.42 0.52 16 36 H 0.08 1.50 5.79 -51.93 -0.30 1.20 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.59 6.18 -51.93 -0.32 0.27 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.40 4.17 6.85 -40.82 -0.28 3.89 16 42 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 48 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 49 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 51 H 0.07 1.56 5.79 -51.93 -0.30 1.26 16 LS Contribution 409.31 15.07 6.17 6.17 Total: -1.00 -32.58 409.31 -11.56 -44.15 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: -8.16 Total: 19.02 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -3.94 Total: -4.00 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.75 Total: -56.53 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: 0.15 Total: -25.00 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.58 -11.56 -44.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752435035.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.731 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds