Wall clock time and date at job start Wed Apr 1 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86793 * 120.00077 * 2 1 4 4 H 1.48506 * 109.46981 * 239.99903 * 3 2 1 5 5 H 1.48493 * 109.47408 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47449 * 120.00264 * 3 2 1 7 7 C 1.38954 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99835 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99671 * 359.97438 * 7 2 1 10 10 C 1.34786 * 119.99930 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99496 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00208 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47030 * 174.33779 * 12 10 9 14 14 C 1.46815 * 110.99808 * 64.93187 * 13 12 10 15 15 C 1.53264 * 109.44681 * 170.79797 * 14 13 12 16 16 C 1.53222 * 108.61813 * 55.59056 * 15 14 13 17 17 C 1.52736 * 117.84116 * 162.98982 * 16 15 14 18 18 C 1.52763 * 117.78682 * 93.99672 * 16 15 14 19 19 H 1.09002 * 117.53074 * 215.27795 * 18 16 15 20 20 N 1.46501 * 117.50860 * 0.35481 * 18 16 15 21 21 C 1.34775 * 119.99914 * 204.93279 * 20 18 16 22 22 O 1.21280 * 120.00258 * 0.02562 * 21 20 18 23 23 C 1.50697 * 120.00005 * 180.02562 * 21 20 18 24 24 H 1.09003 * 115.55862 * 325.70461 * 23 21 20 25 25 C 1.52998 * 117.50302 * 111.39056 * 23 21 20 26 26 C 1.52993 * 117.50162 * 180.02562 * 23 21 20 27 27 C 1.52995 * 138.59217 * 121.61726 * 26 23 21 28 28 C 1.52993 * 138.58893 * 23.40044 * 26 23 21 29 29 C 1.53215 * 114.74574 * 308.58664 * 16 15 14 30 30 C 1.46814 * 111.00569 * 300.23518 * 13 12 10 31 31 H 0.97003 * 120.00011 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00483 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.46902 * 54.34595 * 12 10 9 34 34 H 1.08991 * 109.47230 * 294.34047 * 12 10 9 35 35 H 1.09004 * 109.47316 * 50.80674 * 14 13 12 36 36 H 1.08996 * 109.47565 * 290.79041 * 14 13 12 37 37 H 1.09002 * 109.61335 * 295.85914 * 15 14 13 38 38 H 1.08994 * 109.61495 * 175.33501 * 15 14 13 39 39 H 1.09005 * 117.49854 * 144.78473 * 17 16 15 40 40 H 1.09001 * 117.53325 * 359.73370 * 17 16 15 41 41 H 0.96997 * 120.00233 * 24.93507 * 20 18 16 42 42 H 1.09000 * 117.50430 * 214.98199 * 25 23 21 43 43 H 1.09005 * 117.49930 * 0.02562 * 25 23 21 44 44 H 1.09006 * 117.49808 * 336.59788 * 27 26 23 45 45 H 1.09001 * 117.50230 * 121.61633 * 27 26 23 46 46 H 1.09001 * 117.50206 * 238.38773 * 28 26 23 47 47 H 1.09003 * 117.49824 * 23.37994 * 28 26 23 48 48 H 1.09002 * 109.61353 * 171.15131 * 29 16 15 49 49 H 1.09002 * 109.61340 * 291.67861 * 29 16 15 50 50 H 1.09005 * 109.47247 * 309.19810 * 30 13 12 51 51 H 1.09007 * 109.47417 * 69.20046 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3232 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2436 -4.8630 -0.0010 13 7 2.1921 -5.9761 -0.1390 14 6 3.0799 -6.0585 1.0274 15 6 3.8938 -7.3554 0.9587 16 6 4.6384 -7.3952 -0.3798 17 6 5.8050 -8.3714 -0.5183 18 6 6.0718 -6.8682 -0.4133 19 1 6.3974 -6.3505 -1.3156 20 7 6.6382 -6.3676 0.8416 21 6 7.6373 -5.4633 0.8167 22 8 8.0671 -5.0636 -0.2446 23 6 8.2202 -4.9488 2.1076 24 1 7.5165 -4.8466 2.9337 25 6 9.6545 -5.3585 2.4480 26 6 9.3516 -3.9232 2.0126 27 6 9.6489 -2.4963 2.4775 28 6 9.8828 -2.8896 1.0176 29 6 3.7589 -7.1520 -1.6105 30 6 2.9530 -5.8672 -1.3899 31 1 -0.4850 0.8401 0.0004 32 1 0.3533 -2.3906 -0.0005 33 1 0.5422 -4.8779 -0.8353 34 1 0.6962 -4.9661 0.9358 35 1 2.4831 -6.0518 1.9395 36 1 3.7570 -5.2043 1.0298 37 1 3.2236 -8.2121 1.0301 38 1 4.6122 -7.3803 1.7780 39 1 5.9544 -8.8426 -1.4898 40 1 6.0513 -8.9880 0.3461 41 1 6.2942 -6.6869 1.6905 42 1 9.8944 -5.5260 3.4980 43 1 10.1766 -6.0000 1.7380 44 1 8.7982 -1.8501 2.6946 45 1 10.5273 -2.3439 3.1047 46 1 10.9151 -2.9960 0.6842 47 1 9.1862 -2.5026 0.2738 48 1 4.3879 -7.0422 -2.4939 49 1 3.0778 -7.9923 -1.7454 50 1 2.2646 -5.7223 -2.2225 51 1 3.6331 -5.0175 -1.3287 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752435035.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:16 Heat of formation + Delta-G solvation = -1.812381 kcal Electronic energy + Delta-G solvation = -31409.938529 eV Core-core repulsion = 27311.013159 eV Total energy + Delta-G solvation = -4098.925371 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.50658 -40.82077 -39.74718 -38.36767 -37.22071 -35.82564 -34.39510 -33.46718 -33.32710 -31.90259 -31.27858 -27.96579 -26.07830 -25.56997 -24.32007 -23.36104 -22.88503 -22.63884 -21.56212 -21.10673 -20.36680 -20.00761 -19.40846 -18.26104 -17.77518 -17.31951 -16.71867 -16.42543 -16.24263 -16.13622 -15.96761 -15.74911 -15.69314 -15.56702 -15.33905 -15.24554 -14.66560 -14.48486 -13.77165 -13.62371 -13.56912 -13.32619 -13.16700 -13.06384 -12.94077 -12.80199 -12.63322 -12.50014 -12.44227 -12.40378 -12.18006 -11.99153 -11.67697 -11.46257 -11.31780 -11.25196 -11.14569 -11.02085 -10.97449 -10.88287 -10.60429 -10.02735 -9.62861 -9.00376 -8.50088 -6.00051 1.32194 1.34863 1.38471 1.45433 1.97168 1.99413 2.24412 2.64379 2.78100 2.86511 3.06775 3.15495 3.25155 3.27500 3.66451 3.70281 3.73707 3.80181 3.87757 3.95744 4.04878 4.25180 4.38162 4.39542 4.44164 4.53613 4.55013 4.62973 4.64078 4.66062 4.67919 4.70513 4.76444 4.80926 4.89737 4.92065 4.93991 4.96924 4.97916 5.01788 5.08862 5.20151 5.26004 5.31708 5.33863 5.48354 5.51602 5.88930 6.06354 6.15264 6.48868 6.55585 7.08239 7.21123 7.51867 8.08173 8.64967 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007304 B = 0.003836 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3832.352212 B = 7297.598384 C =10438.725673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.986 3.014 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.071 0.929 9 N -0.571 5.571 10 C 0.406 3.594 11 O -0.620 6.620 12 C 0.049 3.951 13 N -0.497 5.497 14 C 0.042 3.958 15 C -0.063 4.063 16 C -0.123 4.123 17 C -0.148 4.148 18 C 0.061 3.939 19 H 0.097 0.903 20 N -0.682 5.682 21 C 0.536 3.464 22 O -0.583 6.583 23 C -0.156 4.156 24 H 0.140 0.860 25 C -0.067 4.067 26 C -0.228 4.228 27 C -0.110 4.110 28 C -0.134 4.134 29 C -0.067 4.067 30 C 0.044 3.956 31 H 0.279 0.721 32 H 0.396 0.604 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.031 0.969 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.412 0.588 42 H 0.141 0.859 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.128 0.872 46 H 0.110 0.890 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.093 0.907 50 H 0.065 0.935 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.534 -17.472 6.511 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.209 4.209 3 Si 0.810 3.190 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.089 0.911 9 N -0.208 5.208 10 C 0.193 3.807 11 O -0.508 6.508 12 C -0.083 4.083 13 N -0.220 5.220 14 C -0.086 4.086 15 C -0.101 4.101 16 C -0.124 4.124 17 C -0.186 4.186 18 C -0.045 4.045 19 H 0.115 0.885 20 N -0.332 5.332 21 C 0.324 3.676 22 O -0.463 6.463 23 C -0.177 4.177 24 H 0.158 0.842 25 C -0.104 4.104 26 C -0.229 4.229 27 C -0.147 4.147 28 C -0.171 4.171 29 C -0.105 4.105 30 C -0.084 4.084 31 H 0.088 0.912 32 H 0.230 0.770 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.250 0.750 42 H 0.159 0.841 43 H 0.117 0.883 44 H 0.108 0.892 45 H 0.146 0.854 46 H 0.128 0.872 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.112 0.888 50 H 0.084 0.916 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 12.212 -17.474 5.748 22.080 hybrid contribution -0.244 2.163 -0.103 2.179 sum 11.968 -15.311 5.646 20.237 Atomic orbital electron populations 1.69651 1.06667 1.29381 1.50051 1.25955 0.96491 1.02170 0.96257 0.85099 0.77925 0.77209 0.78776 1.20208 1.18962 1.19771 1.19523 0.92343 0.84378 1.50080 0.91100 1.42114 1.09316 1.04923 1.64410 1.22249 0.88817 0.87192 0.82410 1.90469 1.15680 1.87679 1.56968 1.22171 0.95603 0.85341 1.05216 1.62393 1.18422 1.38289 1.02858 1.22250 0.95542 0.98109 0.92682 1.21093 0.97766 0.97334 0.93921 1.21979 0.89050 1.03583 0.97806 1.23628 0.99063 0.90795 1.05101 1.21628 0.97761 0.96770 0.88311 0.88510 1.45183 1.35823 1.43223 1.08953 1.20236 0.79095 0.77868 0.90376 1.90657 1.62418 1.59334 1.33898 1.22032 0.94227 1.04827 0.96644 0.84225 1.22786 0.91581 0.92195 1.03823 1.21442 1.02614 0.90095 1.08702 1.22827 1.03410 0.91846 0.96602 1.22550 1.01488 1.00191 0.92878 1.21148 0.97114 0.97079 0.95154 1.22192 0.96551 0.97985 0.91698 0.91190 0.77016 0.87546 0.87061 0.90973 0.95043 0.88895 0.90501 0.86804 0.86291 0.74957 0.84116 0.88336 0.89221 0.85412 0.87197 0.91527 0.91481 0.88815 0.91644 0.95807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.10 13.05 21.66 0.28 -49.81 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 3 Si 0.99 44.18 29.55 68.60 2.03 46.21 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.33 -19.36 9.68 84.04 0.81 -18.55 16 8 H 0.07 4.46 7.16 -2.91 -0.02 4.44 16 9 N -0.57 -29.66 5.29 -306.97 -1.62 -31.29 16 10 C 0.41 19.27 7.19 87.65 0.63 19.90 16 11 O -0.62 -33.90 11.30 -3.08 -0.03 -33.93 16 12 C 0.05 1.69 5.82 85.56 0.50 2.18 16 13 N -0.50 -15.85 4.78 -900.18 -4.30 -20.15 16 14 C 0.04 1.30 5.05 86.41 0.44 1.74 16 15 C -0.06 -1.39 5.67 30.76 0.17 -1.22 16 16 C -0.12 -2.87 2.02 -52.20 -0.11 -2.97 16 17 C -0.15 -2.67 9.92 30.52 0.30 -2.36 16 18 C 0.06 1.66 6.10 44.92 0.27 1.94 16 19 H 0.10 3.33 7.40 -2.39 -0.02 3.31 16 20 N -0.68 -17.69 5.35 -442.86 -2.37 -20.06 16 21 C 0.54 16.79 7.61 87.66 0.67 17.45 16 22 O -0.58 -23.71 15.81 -3.03 -0.05 -23.76 16 23 C -0.16 -3.75 6.19 -11.54 -0.07 -3.82 16 24 H 0.14 2.82 8.14 -2.39 -0.02 2.80 16 25 C -0.07 -1.17 10.24 30.60 0.31 -0.86 16 26 C -0.23 -5.52 5.05 -52.18 -0.26 -5.78 16 27 C -0.11 -2.33 10.53 30.59 0.32 -2.00 16 28 C -0.13 -3.53 10.16 30.59 0.31 -3.22 16 29 C -0.07 -1.71 5.87 30.75 0.18 -1.53 16 30 C 0.04 1.48 4.96 86.41 0.43 1.91 16 31 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 32 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 33 H 0.11 3.32 8.13 -2.38 -0.02 3.30 16 34 H 0.11 3.38 8.04 -2.39 -0.02 3.36 16 35 H 0.07 2.05 8.02 -2.39 -0.02 2.03 16 36 H 0.03 1.28 5.79 -2.39 -0.01 1.26 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.08 1.37 6.18 -2.39 -0.01 1.35 16 39 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.41 8.10 6.85 -92.71 -0.64 7.47 16 42 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 44 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 45 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 49 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.07 2.13 8.08 -2.38 -0.02 2.11 16 51 H 0.02 1.06 5.79 -2.38 -0.01 1.04 16 Total: -1.00 -77.10 409.31 -1.09 -78.20 By element: Atomic # 1 Polarization: 52.19 SS G_CDS: -0.41 Total: 51.78 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 5.38 Total: 2.81 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -8.01 Total: -121.31 kcal Atomic # 8 Polarization: -57.61 SS G_CDS: -0.08 Total: -57.69 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -77.10 -1.09 -78.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752435035.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.386 kcal (2) G-P(sol) polarization free energy of solvation -77.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds