Wall clock time and date at job start Wed Apr 1 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99784 * 2 1 4 4 H 1.48497 * 109.47289 * 90.00130 * 3 2 1 5 5 H 1.48506 * 109.47101 * 210.00052 * 3 2 1 6 6 H 1.48493 * 109.47284 * 329.99913 * 3 2 1 7 7 C 1.38949 * 120.00384 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99778 * 359.97438 * 7 2 1 9 9 N 1.37102 * 120.00393 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00186 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99994 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99695 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.46633 * 174.43190 * 12 10 9 14 14 C 1.46812 * 110.99523 * 300.17817 * 13 12 10 15 15 C 1.53266 * 109.44202 * 189.20034 * 14 13 12 16 16 C 1.53215 * 108.62194 * 304.39964 * 15 14 13 17 17 C 1.52763 * 117.79411 * 266.02146 * 16 15 14 18 18 C 1.52723 * 117.84834 * 197.00979 * 16 15 14 19 19 H 1.08999 * 117.50863 * 0.27575 * 18 16 15 20 20 N 1.46498 * 117.50416 * 215.21780 * 18 16 15 21 21 C 1.34782 * 119.99741 * 155.00001 * 20 18 16 22 22 O 1.21274 * 120.00316 * 0.02562 * 21 20 18 23 23 C 1.50704 * 119.99695 * 180.02562 * 21 20 18 24 24 H 1.08998 * 115.54998 * 34.41101 * 23 21 20 25 25 C 1.53005 * 117.49388 * 248.74609 * 23 21 20 26 26 C 1.52995 * 117.49820 * 180.09155 * 23 21 20 27 27 C 1.52997 * 138.58591 * 336.58567 * 26 23 21 28 28 C 1.52992 * 138.58484 * 238.38340 * 26 23 21 29 29 C 1.53215 * 114.73046 * 51.42448 * 16 15 14 30 30 C 1.46806 * 111.00407 * 64.87209 * 13 12 10 31 31 H 0.97001 * 120.00375 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99169 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.46719 * 294.42373 * 12 10 9 34 34 H 1.08999 * 109.47336 * 54.43046 * 12 10 9 35 35 H 1.09002 * 109.47901 * 309.19004 * 14 13 12 36 36 H 1.08997 * 109.47876 * 69.21010 * 14 13 12 37 37 H 1.08997 * 109.61310 * 184.65424 * 15 14 13 38 38 H 1.09001 * 109.60874 * 64.13811 * 15 14 13 39 39 H 1.08996 * 117.51072 * 359.63556 * 17 16 15 40 40 H 1.09006 * 117.50211 * 144.69898 * 17 16 15 41 41 H 0.96998 * 120.00357 * 334.99951 * 20 18 16 42 42 H 1.08990 * 117.50521 * 359.97438 * 25 23 21 43 43 H 1.09001 * 117.49619 * 145.02093 * 25 23 21 44 44 H 1.08999 * 117.50134 * 336.60550 * 27 26 23 45 45 H 1.08998 * 117.49313 * 121.62799 * 27 26 23 46 46 H 1.09004 * 117.49848 * 238.38111 * 28 26 23 47 47 H 1.09000 * 117.50349 * 23.36867 * 28 26 23 48 48 H 1.08995 * 109.61158 * 188.84021 * 29 16 15 49 49 H 1.08994 * 109.75628 * 68.40327 * 29 16 15 50 50 H 1.09004 * 109.47610 * 290.79638 * 30 13 12 51 51 H 1.08999 * 109.47821 * 50.80445 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 1.4000 5 1 3.5456 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4474 -3.4209 0.0000 12 6 5.5608 -2.3703 -0.0012 13 7 6.0506 -3.7488 0.1335 14 6 5.5773 -4.3554 1.3838 15 6 6.2873 -5.6963 1.6010 16 6 6.0563 -6.5774 0.3690 17 6 4.8828 -7.5549 0.4022 18 6 6.3183 -8.0758 0.5044 19 1 6.6527 -8.4428 1.4747 20 7 6.8690 -8.7742 -0.6598 21 6 7.5770 -9.9088 -0.4922 22 8 7.7578 -10.3518 0.6221 23 6 8.1440 -10.6269 -1.6897 24 1 8.4722 -9.9877 -2.5093 25 6 7.5378 -11.9843 -2.0517 26 6 8.9363 -11.9104 -1.4339 27 6 9.7254 -12.5646 -0.2980 28 6 10.3376 -12.4654 -1.6966 29 6 6.3926 -5.9100 -0.9685 30 6 5.6764 -4.5565 -1.0339 31 1 -0.4851 0.8400 -0.0004 32 1 3.8648 -0.3632 -0.0011 33 1 5.9233 -1.9458 -0.9373 34 1 5.9248 -1.7721 0.8342 35 1 5.7973 -3.6885 2.2174 36 1 4.5014 -4.5194 1.3237 37 1 5.8789 -6.1876 2.4841 38 1 7.3557 -5.5270 1.7346 39 1 4.2731 -7.5790 1.3054 40 1 4.3483 -7.7316 -0.5312 41 1 6.7241 -8.4202 -1.5511 42 1 6.7293 -12.3582 -1.4235 43 1 7.4677 -12.2383 -3.1094 44 1 10.1290 -11.9115 0.4757 45 1 9.3992 -13.5482 0.0399 46 1 10.4143 -13.3837 -2.2788 47 1 11.1441 -11.7470 -1.8436 48 1 6.0539 -6.5430 -1.7886 49 1 7.4692 -5.7582 -1.0441 50 1 4.5981 -4.7156 -1.0352 51 1 5.9678 -4.0347 -1.9454 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752435037.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:21 Heat of formation + Delta-G solvation = 25.113353 kcal Electronic energy + Delta-G solvation = -30244.752065 eV Core-core repulsion = 26146.994281 eV Total energy + Delta-G solvation = -4097.757783 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.49555 -39.66621 -38.53490 -37.51543 -35.96798 -33.98336 -33.41401 -32.71216 -31.77315 -30.79000 -30.09922 -26.52608 -24.93370 -24.03893 -23.21335 -22.72471 -22.15241 -21.35568 -20.61831 -19.49946 -19.46246 -18.74448 -18.02384 -17.41853 -16.47150 -15.99181 -15.50536 -15.37483 -15.31689 -14.95507 -14.89077 -14.78463 -14.42292 -14.29038 -13.99703 -13.64310 -13.38474 -13.11494 -12.86637 -12.73418 -12.34020 -12.14199 -12.13774 -11.93128 -11.83096 -11.75739 -11.57347 -11.35189 -11.28885 -10.69031 -10.62856 -10.58539 -10.55096 -10.47168 -10.37000 -10.29661 -10.06296 -10.00088 -9.69923 -9.55904 -9.30194 -8.72055 -8.23540 -7.50128 -6.38238 -3.89445 2.21842 2.73321 2.98120 3.02639 3.11172 3.33255 3.45692 3.63432 3.81371 3.92252 4.04389 4.28258 4.37697 4.44265 4.60135 4.67690 4.71104 4.74262 4.84388 4.98861 5.05731 5.14918 5.17014 5.27625 5.29054 5.31868 5.41407 5.51008 5.56694 5.60555 5.65265 5.70021 5.75395 5.77892 5.84206 5.86757 5.87789 5.88895 5.91216 6.05903 6.09044 6.20274 6.28931 6.39349 6.55606 6.69657 7.29074 7.30599 7.41807 7.50420 8.03875 8.08253 8.51236 8.87725 9.35574 9.74300 10.74584 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.030843 B = 0.001778 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.614830 B =15748.323083 C =15866.575619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.276 1.276 7 C -0.308 4.308 8 H 0.118 0.882 9 N -0.584 5.584 10 C 0.415 3.585 11 O -0.575 6.575 12 C 0.039 3.961 13 N -0.514 5.514 14 C 0.043 3.957 15 C -0.073 4.073 16 C -0.114 4.114 17 C -0.176 4.176 18 C 0.079 3.921 19 H 0.134 0.866 20 N -0.695 5.695 21 C 0.544 3.456 22 O -0.535 6.535 23 C -0.143 4.143 24 H 0.124 0.876 25 C -0.100 4.100 26 C -0.202 4.202 27 C -0.113 4.113 28 C -0.130 4.130 29 C -0.073 4.073 30 C 0.044 3.956 31 H 0.274 0.726 32 H 0.371 0.629 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.402 0.598 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.077 0.923 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.240 -17.780 -4.200 26.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.201 1.201 7 C -0.436 4.436 8 H 0.136 0.864 9 N -0.223 5.223 10 C 0.201 3.799 11 O -0.460 6.460 12 C -0.093 4.093 13 N -0.237 5.237 14 C -0.085 4.085 15 C -0.111 4.111 16 C -0.116 4.116 17 C -0.215 4.215 18 C -0.026 4.026 19 H 0.152 0.848 20 N -0.344 5.344 21 C 0.330 3.670 22 O -0.411 6.411 23 C -0.164 4.164 24 H 0.142 0.858 25 C -0.137 4.137 26 C -0.202 4.202 27 C -0.150 4.150 28 C -0.167 4.167 29 C -0.111 4.111 30 C -0.084 4.084 31 H 0.085 0.915 32 H 0.204 0.796 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.237 0.763 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.118 0.882 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.115 0.885 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.095 0.905 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.277 -18.679 -3.372 27.053 hybrid contribution -0.577 1.865 -0.597 2.041 sum 18.700 -16.814 -3.969 25.459 Atomic orbital electron populations 1.69622 1.05713 1.27622 1.48866 1.25074 0.95507 0.98101 0.97438 0.86665 0.79808 0.83929 0.78970 1.19564 1.19405 1.20138 1.19443 0.79479 0.96550 1.48176 0.86389 1.42414 1.07608 1.06530 1.65724 1.21086 0.89949 0.84557 0.84320 1.90461 1.69886 1.30500 1.55111 1.22103 0.92010 0.91872 1.03314 1.62250 1.57480 1.01089 1.02875 1.22259 1.00599 0.94360 0.91303 1.21172 1.00918 0.94510 0.94496 1.21955 1.01956 0.89741 0.97908 1.23582 0.91200 1.02704 1.04002 1.21800 0.97122 0.92857 0.90837 0.84845 1.45339 1.54176 1.25289 1.09606 1.19656 0.77585 0.80109 0.89616 1.90687 1.58698 1.65963 1.25728 1.21966 1.04514 0.90989 0.98894 0.85778 1.22682 0.94108 0.95479 1.01428 1.21164 0.92720 0.99203 1.07156 1.22603 1.00014 1.01089 0.91253 1.22773 0.92446 1.01839 0.99593 1.21105 1.00625 0.95798 0.93560 1.22237 1.01128 0.92565 0.92492 0.91546 0.79618 0.89262 0.89361 0.91684 0.90581 0.91583 0.91269 0.87991 0.88572 0.76314 0.88000 0.87489 0.88153 0.88507 0.88300 0.88493 0.92327 0.91237 0.90508 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.28 13.96 55.50 0.77 -24.51 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.03 27.74 -169.99 -4.71 14.31 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.31 -8.48 10.16 -14.93 -0.15 -8.63 16 8 H 0.12 3.74 7.39 -52.49 -0.39 3.35 16 9 N -0.58 -13.45 5.09 -10.96 -0.06 -13.51 16 10 C 0.41 8.87 7.19 -10.99 -0.08 8.80 16 11 O -0.57 -14.10 11.30 5.55 0.06 -14.03 16 12 C 0.04 0.63 5.82 -4.97 -0.03 0.60 16 13 N -0.51 -7.88 4.78 -235.88 -1.13 -9.01 16 14 C 0.04 0.66 4.96 -3.73 -0.02 0.64 16 15 C -0.07 -0.93 5.87 -26.48 -0.16 -1.09 16 16 C -0.11 -1.38 2.02 -154.55 -0.31 -1.70 16 17 C -0.18 -2.13 9.85 -26.83 -0.26 -2.39 16 18 C 0.08 0.91 6.14 -68.05 -0.42 0.50 16 19 H 0.13 1.70 7.40 -51.93 -0.38 1.32 16 20 N -0.69 -6.97 5.35 -53.92 -0.29 -7.26 16 21 C 0.54 6.14 7.61 -10.98 -0.08 6.06 16 22 O -0.53 -7.97 15.81 5.56 0.09 -7.88 16 23 C -0.14 -1.20 6.19 -91.77 -0.57 -1.77 16 24 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 25 C -0.10 -0.73 10.24 -26.69 -0.27 -1.00 16 26 C -0.20 -1.73 5.06 -154.48 -0.78 -2.51 16 27 C -0.11 -0.95 10.16 -26.73 -0.27 -1.22 16 28 C -0.13 -0.86 10.53 -26.74 -0.28 -1.14 16 29 C -0.07 -0.86 5.30 -26.48 -0.14 -1.00 16 30 C 0.04 0.65 5.05 -3.74 -0.02 0.63 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.37 7.54 5.76 -40.82 -0.24 7.31 16 33 H 0.09 1.28 8.04 -51.93 -0.42 0.86 16 34 H 0.09 1.26 8.13 -51.93 -0.42 0.84 16 35 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.08 1.45 5.79 -51.93 -0.30 1.15 16 37 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.40 3.18 7.24 -40.82 -0.30 2.89 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.59 6.95 -51.93 -0.36 0.23 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.08 1.43 5.79 -51.93 -0.30 1.13 16 51 H 0.06 0.90 8.02 -51.93 -0.42 0.48 16 LS Contribution 406.94 15.07 6.13 6.13 Total: -1.00 -32.84 406.94 -11.25 -44.09 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -8.18 Total: 15.85 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -3.94 Total: -4.19 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.70 Total: -54.28 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.15 Total: -21.91 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.84 -11.25 -44.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752435037.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.202 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds