Wall clock time and date at job start Wed Apr 1 2020 06:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86802 * 119.99895 * 2 1 4 4 H 1.48500 * 109.46663 * 239.99958 * 3 2 1 5 5 H 1.48499 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47521 * 119.99843 * 3 2 1 7 7 C 1.38946 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99924 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99590 * 0.02562 * 7 2 1 10 10 C 1.34785 * 119.99265 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00395 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99313 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.47150 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00365 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.47182 * 179.97438 * 14 13 12 16 16 C 1.52995 * 109.46982 * 180.02562 * 15 14 13 17 17 C 1.53044 * 109.45934 * 175.00364 * 16 15 14 18 18 C 1.53192 * 109.31087 * 181.38663 * 17 16 15 19 19 N 1.46927 * 108.77731 * 305.36260 * 18 17 16 20 20 C 1.34777 * 120.62962 * 233.59025 * 19 18 17 21 21 O 1.21610 * 120.00255 * 359.97438 * 20 19 18 22 22 C 1.43205 * 119.99792 * 179.97438 * 20 19 18 23 23 C 9.63817 * 146.38067 * 132.37529 * 12 1 2 24 24 C 9.77511 * 127.98644 * 138.30899 * 13 1 2 25 25 C 1.53001 * 117.49815 * 198.88145 * 24 23 22 26 26 C 1.52999 * 59.99986 * 252.51440 * 25 24 23 27 27 C 1.46922 * 118.73631 * 53.85974 * 19 18 17 28 28 C 1.53043 * 109.46161 * 295.07069 * 16 15 14 29 29 H 0.97003 * 120.00352 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00617 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47544 * 59.99774 * 12 10 9 32 32 H 1.09006 * 109.47367 * 299.99606 * 12 10 9 33 33 H 1.00901 * 111.00075 * 303.95377 * 13 12 10 34 34 H 1.09002 * 109.46808 * 60.00239 * 14 13 12 35 35 H 1.08996 * 109.47290 * 300.00112 * 14 13 12 36 36 H 1.09002 * 109.46907 * 60.00479 * 15 14 13 37 37 H 1.08996 * 109.47246 * 300.00319 * 15 14 13 38 38 H 1.08996 * 109.46346 * 55.02612 * 16 15 14 39 39 H 1.08993 * 109.49874 * 61.43682 * 17 16 15 40 40 H 1.09000 * 109.52074 * 301.35090 * 17 16 15 41 41 H 1.08998 * 109.58796 * 185.57535 * 18 17 16 42 42 H 1.09000 * 109.70482 * 65.22080 * 18 17 16 43 43 H 1.09004 * 115.54856 * 344.59222 * 24 23 22 44 44 H 1.09004 * 117.49834 * 359.97438 * 25 24 23 45 45 H 1.08995 * 117.49577 * 145.02330 * 25 24 23 46 46 H 1.09004 * 117.49789 * 252.51625 * 26 25 24 47 47 H 1.08998 * 117.52032 * 107.48340 * 26 25 24 48 48 H 1.08998 * 109.58544 * 65.93412 * 27 19 18 49 49 H 1.09003 * 109.58721 * 186.35248 * 27 19 18 50 50 H 1.09001 * 109.49546 * 298.56675 * 28 16 15 51 51 H 1.09000 * 109.50057 * 58.62859 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6966 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2032 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1983 -5.9794 0.0004 14 6 1.4981 -7.2707 0.0015 15 6 2.5231 -8.4068 0.0001 16 6 1.7937 -9.7517 0.0006 17 6 2.8142 -10.8851 -0.1265 18 6 2.0780 -12.2281 -0.1604 19 7 1.2141 -12.3240 1.0242 20 6 1.2968 -13.3858 1.8502 21 8 2.0917 -14.2764 1.6180 22 6 0.4487 -13.4651 3.0013 23 6 -0.2518 -13.5289 3.9454 24 6 -1.1254 -13.6111 5.1251 25 6 -1.0740 -14.8961 5.9541 26 6 -2.2903 -14.6017 5.0738 27 6 0.2543 -11.2434 1.2878 28 6 1.0147 -9.9087 1.3086 29 1 -0.4851 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6168 -4.9208 -0.8885 32 1 0.6175 -4.9205 0.8914 33 1 2.8326 -5.9124 -0.7815 34 1 0.8722 -7.3454 -0.8878 35 1 0.8742 -7.3450 0.8922 36 1 3.1492 -8.3323 0.8892 37 1 3.1466 -8.3324 -0.8908 38 1 1.1017 -9.7899 -0.8406 39 1 3.4910 -10.8628 0.7275 40 1 3.3850 -10.7598 -1.0466 41 1 2.8025 -13.0424 -0.1511 42 1 1.4694 -12.2909 -1.0625 43 1 -1.2848 -12.6738 5.6583 44 1 -0.3928 -15.6807 5.6245 45 1 -1.1994 -14.8043 7.0329 46 1 -3.2160 -14.3163 5.5736 47 1 -2.4093 -15.1922 4.1654 48 1 -0.5003 -11.2250 0.5015 49 1 -0.2249 -11.4076 2.2530 50 1 1.7085 -9.8955 2.1491 51 1 0.3047 -9.0879 1.4100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753567174.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:54 Heat of formation + Delta-G solvation = -26.794899 kcal Electronic energy + Delta-G solvation = -28552.989069 eV Core-core repulsion = 24452.980375 eV Total energy + Delta-G solvation = -4100.008694 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.36735 -40.15790 -39.08438 -38.51824 -37.07203 -35.92825 -34.89067 -33.81191 -33.25382 -32.06696 -30.78560 -28.25829 -26.79587 -25.71276 -24.48430 -24.37335 -23.31879 -23.01597 -21.88801 -21.07706 -20.81031 -19.89477 -19.10991 -17.91410 -17.79664 -17.26858 -17.09340 -16.54818 -16.44745 -16.02928 -15.90239 -15.66860 -15.43791 -15.25297 -15.14966 -15.06755 -14.46772 -14.36209 -13.99476 -13.81289 -13.54982 -13.48785 -13.23887 -13.11777 -12.99880 -12.86797 -12.55548 -12.45006 -12.42982 -12.37681 -12.17812 -12.13891 -12.12170 -11.81063 -11.59585 -11.50112 -11.33278 -11.21757 -11.02879 -10.72111 -10.34348 -10.01418 -9.81835 -9.27815 -8.46292 -5.95228 0.33935 1.08221 1.40316 1.42322 1.53164 1.80535 2.05766 2.24841 2.29809 2.86453 2.95147 3.03968 3.20954 3.52685 3.71238 3.72890 3.81015 3.88760 3.93824 4.00061 4.07802 4.22821 4.27928 4.35088 4.39205 4.40794 4.49285 4.51047 4.56217 4.64293 4.70720 4.74611 4.79268 4.81875 4.87349 4.94999 4.99433 5.06379 5.07027 5.12940 5.19199 5.20540 5.29370 5.40965 5.46988 5.54534 5.91857 6.08542 6.12842 6.15072 6.44974 6.60780 6.84357 7.12843 7.56595 8.12211 8.70756 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.001456 C = 0.001356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.100827 B =19221.553997 C =20647.871483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.625 6.625 12 C 0.066 3.934 13 N -0.689 5.689 14 C 0.060 3.940 15 C -0.105 4.105 16 C -0.077 4.077 17 C -0.123 4.123 18 C 0.111 3.889 19 N -0.594 5.594 20 C 0.629 3.371 21 O -0.575 6.575 22 C -0.262 4.262 23 C -0.028 4.028 24 C -0.087 4.087 25 C -0.158 4.158 26 C -0.147 4.147 27 C 0.107 3.893 28 C -0.128 4.128 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.342 0.658 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.160 0.840 44 H 0.089 0.911 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.086 0.914 50 H 0.055 0.945 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.445 -28.629 5.777 30.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.467 4.467 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.066 4.066 13 N -0.322 5.322 14 C -0.068 4.068 15 C -0.143 4.143 16 C -0.096 4.096 17 C -0.162 4.162 18 C -0.010 4.010 19 N -0.325 5.325 20 C 0.419 3.581 21 O -0.457 6.457 22 C -0.265 4.265 23 C -0.030 4.030 24 C -0.104 4.104 25 C -0.195 4.195 26 C -0.184 4.184 27 C -0.015 4.015 28 C -0.166 4.166 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.161 0.839 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.177 0.823 44 H 0.107 0.893 45 H 0.149 0.851 46 H 0.152 0.848 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.105 0.895 50 H 0.074 0.926 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.286 -28.896 6.292 30.712 hybrid contribution -0.012 0.959 -0.930 1.336 sum -8.298 -27.937 5.362 29.633 Atomic orbital electron populations 1.69659 1.06785 1.29378 1.50163 1.26021 0.96548 1.02347 0.96186 0.84996 0.77781 0.76682 0.78919 1.19708 1.19390 1.19816 1.19641 0.92723 0.84136 1.50187 0.90407 1.41928 1.09333 1.04691 1.65032 1.20964 0.88284 0.86291 0.82169 1.90486 1.15985 1.88003 1.56707 1.21521 0.94009 0.88046 1.03050 1.60078 1.19359 1.01366 1.51361 1.22127 0.96109 0.87180 1.01365 1.21500 0.97691 0.92752 1.02316 1.21073 0.97018 0.93077 0.98433 1.21930 0.97903 0.93054 1.03264 1.21799 0.93934 0.98718 0.86569 1.48089 1.38738 1.20156 1.25478 1.14971 0.80734 0.82028 0.80365 1.90804 1.39724 1.40340 1.74807 1.20612 1.02130 1.05416 0.98369 1.22166 0.92702 0.95587 0.92587 1.19291 0.99476 0.98636 0.93003 1.23235 1.00888 0.95717 0.99664 1.23223 0.93366 0.99422 1.02362 1.22080 0.90864 0.85277 1.03281 1.22102 0.99920 0.96729 0.97886 0.91263 0.76916 0.91534 0.87829 0.83922 0.94007 0.90183 0.92562 0.91714 0.89129 0.92793 0.88890 0.90259 0.88850 0.82294 0.89278 0.85095 0.84849 0.88887 0.88702 0.89530 0.92585 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.20 13.05 21.66 0.28 -48.92 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 3 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.34 -19.20 9.68 84.04 0.81 -18.39 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.70 16 9 N -0.57 -29.33 5.29 -306.99 -1.62 -30.95 16 10 C 0.44 20.72 7.82 87.66 0.69 21.40 16 11 O -0.63 -34.94 15.78 -3.05 -0.05 -34.99 16 12 C 0.07 2.21 6.17 85.56 0.53 2.74 16 13 N -0.69 -21.07 6.12 -517.94 -3.17 -24.25 16 14 C 0.06 1.23 5.44 86.31 0.47 1.70 16 15 C -0.10 -1.85 4.94 30.60 0.15 -1.70 16 16 C -0.08 -1.00 2.15 -10.77 -0.02 -1.02 16 17 C -0.12 -1.72 5.36 30.67 0.16 -1.55 16 18 C 0.11 1.70 6.43 86.36 0.56 2.26 16 19 N -0.59 -10.62 2.97 -827.03 -2.45 -13.08 16 20 C 0.63 15.34 7.55 85.49 0.65 15.99 16 21 O -0.57 -18.25 16.50 -4.06 -0.07 -18.32 16 22 C -0.26 -5.62 11.59 29.98 0.35 -5.27 16 23 C -0.03 -0.47 13.41 31.04 0.42 -0.05 16 24 C -0.09 -0.77 6.21 -12.65 -0.08 -0.85 16 25 C -0.16 -1.06 10.21 30.59 0.31 -0.75 16 26 C -0.15 -0.84 10.21 30.59 0.31 -0.52 16 27 C 0.11 1.33 6.35 86.51 0.55 1.88 16 28 C -0.13 -1.65 5.16 30.82 0.16 -1.49 16 29 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 30 H 0.40 19.16 7.90 -92.71 -0.73 18.42 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.10 3.10 8.14 -2.38 -0.02 3.08 16 33 H 0.34 11.09 8.43 -89.69 -0.76 10.33 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 1.50 6.53 -2.39 -0.02 1.49 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 41 H 0.08 1.50 7.00 -2.39 -0.02 1.49 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.16 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 46 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 49 H 0.09 1.08 6.31 -2.39 -0.02 1.06 16 50 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.09 1.03 6.50 -2.39 -0.02 1.02 16 Total: -1.00 -76.35 423.18 0.89 -75.46 By element: Atomic # 1 Polarization: 36.56 SS G_CDS: -0.53 Total: 36.02 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 6.48 Total: 14.24 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -6.97 Total: -117.19 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: -0.12 Total: -53.31 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -76.35 0.89 -75.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753567174.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.666 kcal (2) G-P(sol) polarization free energy of solvation -76.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds