Wall clock time and date at job start Wed Apr 1 2020 06:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86794 * 120.00169 * 2 1 4 4 H 1.48495 * 109.46971 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47097 * 299.99959 * 3 2 1 6 6 H 1.48503 * 109.47150 * 59.99907 * 3 2 1 7 7 C 1.38952 * 119.99413 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99554 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00415 * 0.02562 * 7 2 1 10 10 C 1.34767 * 119.99909 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00459 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00153 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47318 * 179.97438 * 12 10 9 14 14 C 1.48555 * 111.00108 * 287.44927 * 13 12 10 15 15 C 1.54586 * 103.18531 * 200.03953 * 14 13 12 16 16 H 1.08997 * 113.14442 * 276.01046 * 15 14 13 17 17 C 1.53265 * 109.82995 * 149.27459 * 15 14 13 18 18 N 1.46577 * 108.18574 * 264.41962 * 17 15 14 19 19 C 1.34775 * 125.30320 * 181.98444 * 18 17 15 20 20 O 1.21279 * 120.00150 * 187.32258 * 19 18 17 21 21 C 1.50698 * 119.99839 * 7.31717 * 19 18 17 22 22 C 1.53004 * 115.56002 * 181.26959 * 21 19 18 23 23 C 1.53000 * 117.49803 * 34.44124 * 22 21 19 24 24 C 1.52996 * 117.50128 * 325.77891 * 22 21 19 25 25 C 1.52998 * 117.50207 * 326.96666 * 21 19 18 26 26 C 1.52996 * 60.00368 * 107.48748 * 25 21 19 27 27 C 1.46603 * 109.39392 * 2.25242 * 18 17 15 28 28 C 1.54279 * 106.98806 * 341.75686 * 27 18 17 29 29 H 1.09000 * 113.69557 * 263.29203 * 28 27 18 30 30 C 1.47843 * 110.99841 * 170.00210 * 13 12 10 31 31 H 0.97004 * 119.99649 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99546 * 359.97438 * 9 7 2 33 33 H 1.09007 * 109.47083 * 59.99973 * 12 10 9 34 34 H 1.09001 * 109.47128 * 300.00087 * 12 10 9 35 35 H 1.09004 * 110.67068 * 81.62118 * 14 13 12 36 36 H 1.08995 * 110.67688 * 318.46514 * 14 13 12 37 37 H 1.09003 * 109.73253 * 144.72789 * 17 15 14 38 38 H 1.09002 * 109.73189 * 24.11613 * 17 15 14 39 39 H 1.09003 * 115.55059 * 180.10754 * 22 21 19 40 40 H 1.08999 * 117.50053 * 359.97438 * 23 22 21 41 41 H 1.09000 * 117.49735 * 145.01623 * 23 22 21 42 42 H 1.08998 * 117.49897 * 214.97485 * 24 22 21 43 43 H 1.09004 * 117.49633 * 0.02562 * 24 22 21 44 44 H 1.08997 * 117.49703 * 359.97438 * 25 21 19 45 45 H 1.09005 * 117.49452 * 214.98265 * 25 21 19 46 46 H 1.09001 * 117.50066 * 107.48862 * 26 25 21 47 47 H 1.08998 * 117.49968 * 252.48949 * 26 25 21 48 48 H 1.09004 * 109.91622 * 101.23445 * 27 18 17 49 49 H 1.08992 * 109.91538 * 222.51730 * 27 18 17 50 50 H 1.08998 * 109.88685 * 26.08529 * 30 13 12 51 51 H 1.09009 * 110.01155 * 264.99110 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3462 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5578 0.0005 11 8 3.2100 -3.5579 0.0001 12 6 1.2436 -4.8630 0.0011 13 7 2.1982 -5.9795 0.0004 14 6 2.8592 -6.1140 -1.3232 15 6 3.3847 -7.5677 -1.3088 16 1 4.3493 -7.6697 -0.8117 17 6 3.3946 -8.1311 -2.7342 18 7 2.1526 -8.8824 -2.9378 19 6 1.8232 -9.5535 -4.0592 20 8 0.7151 -10.0324 -4.1759 21 6 2.8318 -9.7086 -5.1681 22 6 2.3410 -10.4619 -6.4062 23 6 0.8751 -10.2840 -6.8064 24 6 1.3459 -11.6038 -6.1901 25 6 3.8255 -8.5655 -5.3844 26 6 4.2985 -9.8843 -4.7696 27 6 1.3218 -8.7850 -1.7338 28 6 2.2471 -8.3399 -0.5824 29 1 2.6135 -9.1647 0.0289 30 6 1.5094 -7.2655 0.2405 31 1 -0.4850 0.8401 -0.0004 32 1 0.3533 -2.3906 0.0005 33 1 0.6166 -4.9209 -0.8887 34 1 0.6173 -4.9205 0.8914 35 1 3.6842 -5.4075 -1.4148 36 1 2.1391 -5.9730 -2.1291 37 1 4.2507 -8.7936 -2.8621 38 1 3.4520 -7.3134 -3.4527 39 1 3.0712 -10.5756 -7.2074 40 1 0.2601 -9.6307 -6.1875 41 1 0.6408 -10.2811 -7.8709 42 1 1.4211 -12.4684 -6.8494 43 1 1.0404 -11.8180 -5.1659 44 1 3.7494 -7.7011 -4.7249 45 1 4.1295 -8.3501 -6.4088 46 1 4.9139 -10.5364 -5.3895 47 1 4.5344 -9.8875 -3.7055 48 1 0.5331 -8.0481 -1.8857 49 1 0.8859 -9.7571 -1.5039 50 1 0.4715 -7.1967 -0.0851 51 1 1.5493 -7.5178 1.3003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754842433.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:49 Heat of formation + Delta-G solvation = 27.845955 kcal Electronic energy + Delta-G solvation = -31284.998314 eV Core-core repulsion = 27187.359025 eV Total energy + Delta-G solvation = -4097.639289 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.45542 -39.76307 -38.10225 -37.30869 -36.47672 -34.95947 -33.86226 -31.71441 -31.14052 -30.86367 -27.54677 -26.51717 -25.64053 -24.43723 -23.28084 -23.12644 -22.26893 -21.65034 -21.25843 -20.15472 -19.33784 -19.12537 -17.85763 -17.00569 -16.51613 -15.98149 -15.93223 -15.57022 -15.21473 -14.96424 -14.75414 -14.72850 -14.42055 -14.07269 -13.87637 -13.72562 -13.56462 -13.03500 -12.87714 -12.79658 -12.58500 -12.26112 -11.95547 -11.75258 -11.69380 -11.66094 -11.47579 -11.36291 -11.31204 -11.14235 -11.08031 -10.96775 -10.79762 -10.63010 -10.35134 -10.33134 -10.23115 -9.75739 -9.70375 -9.51036 -8.82095 -8.50557 -8.02161 -7.94970 -6.42309 -3.83102 2.16070 2.67804 3.15548 3.26139 3.33030 3.33636 3.87914 3.90198 3.91687 3.99394 4.06001 4.14515 4.19875 4.37826 4.46978 4.59288 4.65524 4.76219 4.86641 4.92855 4.98020 5.05207 5.07103 5.14520 5.21309 5.23537 5.25657 5.32712 5.45379 5.52349 5.53261 5.57520 5.60445 5.68538 5.71330 5.73846 5.74446 5.79013 5.81419 6.00810 6.05361 6.07409 6.11424 6.21618 6.25974 6.30590 7.06878 7.15999 7.24368 7.54695 7.92183 8.05698 8.61114 9.17698 9.54038 10.05676 10.75597 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016187 B = 0.002235 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.390195 B =12522.252974 C =12994.482084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.566 5.566 10 C 0.446 3.554 11 O -0.577 6.577 12 C 0.036 3.964 13 N -0.489 5.489 14 C 0.048 3.952 15 C -0.099 4.099 16 H 0.110 0.890 17 C 0.083 3.917 18 N -0.612 5.612 19 C 0.565 3.435 20 O -0.530 6.530 21 C -0.122 4.122 22 C -0.116 4.116 23 C -0.168 4.168 24 C -0.168 4.168 25 C -0.174 4.174 26 C -0.162 4.162 27 C 0.114 3.886 28 C -0.105 4.105 29 H 0.102 0.898 30 C 0.040 3.960 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.040 0.960 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.120 0.880 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.112 0.888 48 H 0.067 0.933 49 H 0.075 0.925 50 H 0.048 0.952 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.535 -21.842 -8.878 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.231 3.769 11 O -0.461 6.461 12 C -0.095 4.095 13 N -0.213 5.213 14 C -0.080 4.080 15 C -0.118 4.118 16 H 0.128 0.872 17 C -0.039 4.039 18 N -0.346 5.346 19 C 0.354 3.646 20 O -0.407 6.407 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.205 4.205 24 C -0.205 4.205 25 C -0.211 4.211 26 C -0.198 4.198 27 C -0.009 4.009 28 C -0.125 4.125 29 H 0.120 0.880 30 C -0.088 4.088 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.058 0.942 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.126 0.874 44 H 0.138 0.862 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.130 0.870 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.066 0.934 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.960 -21.846 -8.591 23.993 hybrid contribution -0.975 0.821 -0.627 1.420 sum 3.986 -21.025 -9.218 23.300 Atomic orbital electron populations 1.69625 1.05942 1.28034 1.50762 1.25267 0.95637 0.99730 0.97415 0.85806 0.79696 0.81176 0.77705 1.19217 1.20789 1.20754 1.19735 0.93351 0.82171 1.47414 0.87868 1.41874 1.09185 1.04614 1.64602 1.19676 0.88391 0.84432 0.84425 1.90500 1.13611 1.86978 1.55017 1.22076 0.94076 0.91772 1.01620 1.64474 1.26559 1.00939 1.29307 1.23321 0.99561 0.95260 0.89812 1.22860 0.99942 0.95467 0.93532 0.87234 1.22631 0.87516 0.96168 0.97601 1.48125 1.20460 1.51378 1.14652 1.19180 0.87363 0.77087 0.80923 1.90651 1.22086 1.48912 1.79018 1.20867 0.90606 1.05060 0.96027 1.21374 0.93268 1.02625 0.96178 1.23036 0.95849 1.01115 1.00459 1.23065 1.02591 0.91578 1.03278 1.23718 1.00381 0.93067 1.03908 1.23385 0.93559 1.00312 1.02589 1.22169 0.93485 1.01975 0.83263 1.22991 0.95357 0.98428 0.95706 0.87969 1.23004 0.96107 0.89099 1.00611 0.91938 0.77538 0.93302 0.89270 0.87997 0.94166 0.89667 0.89829 0.87255 0.87592 0.89482 0.89590 0.87421 0.86191 0.87589 0.87635 0.87043 0.91480 0.90692 0.93381 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 2 C 0.02 0.56 5.50 -17.46 -0.10 0.46 16 3 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 8 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 9 N -0.57 -14.22 5.29 -10.96 -0.06 -14.27 16 10 C 0.45 10.32 7.61 -10.99 -0.08 10.24 16 11 O -0.58 -15.19 14.63 5.55 0.08 -15.11 16 12 C 0.04 0.63 5.19 -4.97 -0.03 0.61 16 13 N -0.49 -7.64 4.90 -232.05 -1.14 -8.78 16 14 C 0.05 0.69 5.07 -2.07 -0.01 0.68 16 15 C -0.10 -1.02 4.02 -88.32 -0.36 -1.37 16 16 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 17 C 0.08 0.74 4.49 -3.86 -0.02 0.72 16 18 N -0.61 -6.55 3.30 -172.59 -0.57 -7.12 16 19 C 0.57 6.80 7.31 -10.99 -0.08 6.72 16 20 O -0.53 -7.82 12.15 5.56 0.07 -7.75 16 21 C -0.12 -1.16 2.47 -155.66 -0.38 -1.55 16 22 C -0.12 -1.09 5.84 -90.62 -0.53 -1.62 16 23 C -0.17 -1.77 9.67 -26.69 -0.26 -2.02 16 24 C -0.17 -1.71 9.66 -26.69 -0.26 -1.97 16 25 C -0.17 -1.32 9.32 -26.73 -0.25 -1.57 16 26 C -0.16 -1.13 9.26 -26.73 -0.25 -1.38 16 27 C 0.11 1.21 6.17 -3.32 -0.02 1.19 16 28 C -0.11 -1.03 4.19 -88.03 -0.37 -1.40 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 C 0.04 0.47 6.21 -2.71 -0.02 0.45 16 31 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 33 H 0.05 0.80 7.83 -51.93 -0.41 0.39 16 34 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 35 H 0.10 1.73 7.09 -51.93 -0.37 1.36 16 36 H 0.04 0.59 7.57 -51.93 -0.39 0.19 16 37 H 0.09 0.60 4.62 -51.93 -0.24 0.36 16 38 H 0.08 0.75 5.07 -51.93 -0.26 0.49 16 39 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.11 1.37 6.33 -51.93 -0.33 1.04 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.11 1.31 6.23 -51.93 -0.32 0.99 16 44 H 0.12 0.93 4.24 -51.93 -0.22 0.71 16 45 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.11 0.72 5.20 -51.93 -0.27 0.45 16 48 H 0.07 0.80 7.19 -51.93 -0.37 0.42 16 49 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.05 0.54 6.75 -51.93 -0.35 0.19 16 51 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 LS Contribution 388.70 15.07 5.86 5.86 Total: -1.00 -32.35 388.70 -10.80 -43.15 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -7.59 Total: 12.06 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -3.15 Total: -0.15 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -1.04 Total: -53.96 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.15 Total: -22.86 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.35 -10.80 -43.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754842433.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.996 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds