Wall clock time and date at job start Wed Apr 1 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86794 * 120.00169 * 2 1 4 4 H 1.48495 * 109.46971 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47097 * 299.99959 * 3 2 1 6 6 H 1.48503 * 109.47150 * 59.99907 * 3 2 1 7 7 C 1.38952 * 119.99413 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99554 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00415 * 0.02562 * 7 2 1 10 10 C 1.34767 * 119.99909 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00459 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00153 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47318 * 179.97438 * 12 10 9 14 14 C 1.48555 * 111.00108 * 287.44927 * 13 12 10 15 15 C 1.54586 * 103.18531 * 200.03953 * 14 13 12 16 16 H 1.08997 * 113.14442 * 276.01046 * 15 14 13 17 17 C 1.53265 * 109.82995 * 149.27459 * 15 14 13 18 18 N 1.46577 * 108.18574 * 264.41962 * 17 15 14 19 19 C 1.34775 * 125.30320 * 181.98444 * 18 17 15 20 20 O 1.21279 * 120.00150 * 187.32258 * 19 18 17 21 21 C 1.50698 * 119.99839 * 7.31717 * 19 18 17 22 22 C 1.53004 * 115.56002 * 181.26959 * 21 19 18 23 23 C 1.53000 * 117.49803 * 34.44124 * 22 21 19 24 24 C 1.52996 * 117.50128 * 325.77891 * 22 21 19 25 25 C 1.52998 * 117.50207 * 326.96666 * 21 19 18 26 26 C 1.52996 * 60.00368 * 107.48748 * 25 21 19 27 27 C 1.46603 * 109.39392 * 2.25242 * 18 17 15 28 28 C 1.54279 * 106.98806 * 341.75686 * 27 18 17 29 29 H 1.09000 * 113.69557 * 263.29203 * 28 27 18 30 30 C 1.47843 * 110.99841 * 170.00210 * 13 12 10 31 31 H 0.97004 * 119.99649 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99546 * 359.97438 * 9 7 2 33 33 H 1.09007 * 109.47083 * 59.99973 * 12 10 9 34 34 H 1.09001 * 109.47128 * 300.00087 * 12 10 9 35 35 H 1.09004 * 110.67068 * 81.62118 * 14 13 12 36 36 H 1.08995 * 110.67688 * 318.46514 * 14 13 12 37 37 H 1.09003 * 109.73253 * 144.72789 * 17 15 14 38 38 H 1.09002 * 109.73189 * 24.11613 * 17 15 14 39 39 H 1.09003 * 115.55059 * 180.10754 * 22 21 19 40 40 H 1.08999 * 117.50053 * 359.97438 * 23 22 21 41 41 H 1.09000 * 117.49735 * 145.01623 * 23 22 21 42 42 H 1.08998 * 117.49897 * 214.97485 * 24 22 21 43 43 H 1.09004 * 117.49633 * 0.02562 * 24 22 21 44 44 H 1.08997 * 117.49703 * 359.97438 * 25 21 19 45 45 H 1.09005 * 117.49452 * 214.98265 * 25 21 19 46 46 H 1.09001 * 117.50066 * 107.48862 * 26 25 21 47 47 H 1.08998 * 117.49968 * 252.48949 * 26 25 21 48 48 H 1.09004 * 109.91622 * 101.23445 * 27 18 17 49 49 H 1.08992 * 109.91538 * 222.51730 * 27 18 17 50 50 H 1.08998 * 109.88685 * 26.08529 * 30 13 12 51 51 H 1.09009 * 110.01155 * 264.99110 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3462 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5578 0.0005 11 8 3.2100 -3.5579 0.0001 12 6 1.2436 -4.8630 0.0011 13 7 2.1982 -5.9795 0.0004 14 6 2.8592 -6.1140 -1.3232 15 6 3.3847 -7.5677 -1.3088 16 1 4.3493 -7.6697 -0.8117 17 6 3.3946 -8.1311 -2.7342 18 7 2.1526 -8.8824 -2.9378 19 6 1.8232 -9.5535 -4.0592 20 8 0.7151 -10.0324 -4.1759 21 6 2.8318 -9.7086 -5.1681 22 6 2.3410 -10.4619 -6.4062 23 6 0.8751 -10.2840 -6.8064 24 6 1.3459 -11.6038 -6.1901 25 6 3.8255 -8.5655 -5.3844 26 6 4.2985 -9.8843 -4.7696 27 6 1.3218 -8.7850 -1.7338 28 6 2.2471 -8.3399 -0.5824 29 1 2.6135 -9.1647 0.0289 30 6 1.5094 -7.2655 0.2405 31 1 -0.4850 0.8401 -0.0004 32 1 0.3533 -2.3906 0.0005 33 1 0.6166 -4.9209 -0.8887 34 1 0.6173 -4.9205 0.8914 35 1 3.6842 -5.4075 -1.4148 36 1 2.1391 -5.9730 -2.1291 37 1 4.2507 -8.7936 -2.8621 38 1 3.4520 -7.3134 -3.4527 39 1 3.0712 -10.5756 -7.2074 40 1 0.2601 -9.6307 -6.1875 41 1 0.6408 -10.2811 -7.8709 42 1 1.4211 -12.4684 -6.8494 43 1 1.0404 -11.8180 -5.1659 44 1 3.7494 -7.7011 -4.7249 45 1 4.1295 -8.3501 -6.4088 46 1 4.9139 -10.5364 -5.3895 47 1 4.5344 -9.8875 -3.7055 48 1 0.5331 -8.0481 -1.8857 49 1 0.8859 -9.7571 -1.5039 50 1 0.4715 -7.1967 -0.0851 51 1 1.5493 -7.5178 1.3003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754842433.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:47 Heat of formation + Delta-G solvation = 6.222082 kcal Electronic energy + Delta-G solvation = -31285.935995 eV Core-core repulsion = 27187.359025 eV Total energy + Delta-G solvation = -4098.576970 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.29766 -40.80871 -39.77280 -38.14695 -37.45534 -36.05824 -35.65764 -33.32046 -32.63659 -31.75732 -28.91813 -27.45932 -26.90156 -25.85785 -24.17410 -23.80337 -23.01882 -22.46730 -22.33384 -21.17510 -20.82984 -20.12891 -19.85479 -17.97811 -17.64093 -17.26263 -16.85956 -16.56972 -16.41455 -16.30614 -16.07581 -15.83885 -15.53134 -15.38663 -15.07953 -14.80753 -14.65462 -14.19916 -14.12792 -13.81526 -13.60876 -13.52313 -13.18918 -13.04530 -12.99782 -12.71771 -12.51903 -12.46539 -12.39725 -12.29360 -12.13978 -12.10885 -11.84414 -11.80888 -11.76743 -11.49121 -11.45431 -11.08726 -10.61075 -10.41901 -10.31596 -10.00904 -9.66629 -9.30683 -8.46721 -5.95314 1.34612 1.36346 1.41447 1.55748 1.86333 2.05248 2.28109 2.62826 2.77343 3.15644 3.21299 3.23424 3.24442 3.37856 3.49022 3.50498 3.69663 3.87410 3.96031 4.01753 4.08679 4.15315 4.21605 4.24922 4.28536 4.32539 4.36618 4.37126 4.48892 4.50931 4.56081 4.63745 4.68203 4.80998 4.83424 4.86086 4.88894 4.99238 5.03628 5.08401 5.14852 5.18143 5.24826 5.29798 5.30839 5.39162 5.41091 5.83140 5.93519 6.07713 6.40424 6.60218 7.05347 7.13027 7.56380 8.11766 8.71123 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016187 B = 0.002235 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.390195 B =12522.252974 C =12994.482084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.016 4.016 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.329 4.329 8 H 0.080 0.920 9 N -0.577 5.577 10 C 0.444 3.556 11 O -0.611 6.611 12 C 0.049 3.951 13 N -0.509 5.509 14 C 0.049 3.951 15 C -0.089 4.089 16 H 0.124 0.876 17 C 0.086 3.914 18 N -0.613 5.613 19 C 0.556 3.444 20 O -0.567 6.567 21 C -0.148 4.148 22 C -0.103 4.103 23 C -0.182 4.182 24 C -0.172 4.172 25 C -0.169 4.169 26 C -0.140 4.140 27 C 0.113 3.887 28 C -0.090 4.090 29 H 0.129 0.871 30 C 0.040 3.960 31 H 0.277 0.723 32 H 0.394 0.606 33 H 0.061 0.939 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.135 0.865 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.119 0.881 48 H 0.049 0.951 49 H 0.075 0.925 50 H 0.053 0.947 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.046 -23.052 -9.276 25.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.215 4.215 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.458 4.458 8 H 0.098 0.902 9 N -0.215 5.215 10 C 0.231 3.769 11 O -0.497 6.497 12 C -0.083 4.083 13 N -0.233 5.233 14 C -0.079 4.079 15 C -0.108 4.108 16 H 0.142 0.858 17 C -0.036 4.036 18 N -0.346 5.346 19 C 0.347 3.653 20 O -0.447 6.447 21 C -0.151 4.151 22 C -0.121 4.121 23 C -0.219 4.219 24 C -0.209 4.209 25 C -0.205 4.205 26 C -0.177 4.177 27 C -0.010 4.010 28 C -0.109 4.109 29 H 0.147 0.853 30 C -0.088 4.088 31 H 0.086 0.914 32 H 0.228 0.772 33 H 0.079 0.921 34 H 0.126 0.874 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.131 0.869 38 H 0.101 0.899 39 H 0.153 0.847 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.101 0.899 44 H 0.134 0.866 45 H 0.138 0.862 46 H 0.144 0.856 47 H 0.136 0.864 48 H 0.067 0.933 49 H 0.094 0.906 50 H 0.071 0.929 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.467 -23.065 -8.978 25.581 hybrid contribution -1.470 1.178 -0.484 1.945 sum 4.997 -21.887 -9.462 24.362 Atomic orbital electron populations 1.69690 1.06900 1.29164 1.50695 1.26063 0.96543 1.02494 0.96443 0.84864 0.78115 0.77078 0.78259 1.19584 1.19702 1.19686 1.19692 0.92683 0.83884 1.49550 0.90158 1.41962 1.09265 1.04811 1.65470 1.20678 0.88317 0.85738 0.82141 1.90471 1.15448 1.87810 1.55955 1.21912 0.93856 0.89459 1.03053 1.64431 1.26869 1.01982 1.30054 1.23217 0.98275 0.97294 0.89113 1.22812 1.00595 0.92609 0.94776 0.85762 1.22726 0.87664 0.96567 0.96598 1.48199 1.20931 1.51068 1.14382 1.19740 0.87479 0.76571 0.81560 1.90637 1.23754 1.50524 1.79781 1.20905 0.91354 1.07244 0.95577 1.21537 0.92836 1.01183 0.96575 1.22964 0.97047 1.01124 1.00724 1.23006 1.03378 0.92242 1.02229 1.23790 0.99005 0.92917 1.04813 1.23510 0.91128 0.99687 1.03340 1.22137 0.93491 1.01506 0.83826 1.22972 0.94417 0.98407 0.95136 0.85255 1.23091 0.96309 0.87577 1.01809 0.91390 0.77211 0.92124 0.87352 0.91289 0.95080 0.86873 0.89915 0.84748 0.90684 0.87965 0.87703 0.89914 0.86604 0.86227 0.85611 0.86367 0.93252 0.90618 0.92891 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.27 13.05 21.66 0.28 -49.99 16 2 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 3 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.58 -29.81 5.29 -306.99 -1.62 -31.43 16 10 C 0.44 21.08 7.61 87.66 0.67 21.74 16 11 O -0.61 -33.19 14.63 -3.07 -0.04 -33.24 16 12 C 0.05 1.70 5.19 85.56 0.44 2.14 16 13 N -0.51 -15.60 4.90 -888.08 -4.35 -19.95 16 14 C 0.05 1.39 5.07 86.52 0.44 1.83 16 15 C -0.09 -1.67 4.02 -9.30 -0.04 -1.71 16 16 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 17 C 0.09 1.37 4.49 86.45 0.39 1.76 16 18 N -0.61 -12.51 3.30 -818.34 -2.70 -15.21 16 19 C 0.56 13.20 7.31 87.66 0.64 13.84 16 20 O -0.57 -17.38 12.15 -3.03 -0.04 -17.42 16 21 C -0.15 -2.56 2.47 -52.93 -0.13 -2.69 16 22 C -0.10 -1.77 5.84 -10.79 -0.06 -1.83 16 23 C -0.18 -3.83 9.67 30.62 0.30 -3.53 16 24 C -0.17 -3.41 9.66 30.62 0.30 -3.11 16 25 C -0.17 -2.14 9.32 30.59 0.29 -1.86 16 26 C -0.14 -1.48 9.26 30.59 0.28 -1.19 16 27 C 0.11 2.31 6.17 86.79 0.54 2.85 16 28 C -0.09 -1.56 4.19 -9.11 -0.04 -1.60 16 29 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 30 C 0.04 0.86 6.21 86.51 0.54 1.40 16 31 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.39 19.51 7.90 -92.71 -0.73 18.78 16 33 H 0.06 1.97 7.83 -2.38 -0.02 1.95 16 34 H 0.11 3.34 8.08 -2.39 -0.02 3.32 16 35 H 0.07 2.43 7.09 -2.38 -0.02 2.41 16 36 H 0.03 0.93 7.57 -2.39 -0.02 0.91 16 37 H 0.11 1.21 4.62 -2.39 -0.01 1.20 16 38 H 0.08 1.39 5.07 -2.39 -0.01 1.38 16 39 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 2.06 6.33 -2.39 -0.02 2.05 16 41 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 43 H 0.08 2.08 6.23 -2.38 -0.01 2.07 16 44 H 0.12 1.58 4.24 -2.39 -0.01 1.57 16 45 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 46 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.12 1.07 5.20 -2.39 -0.01 1.06 16 48 H 0.05 1.18 7.19 -2.38 -0.02 1.16 16 49 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.05 1.11 6.75 -2.39 -0.02 1.10 16 51 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -73.15 388.70 -0.39 -73.53 By element: Atomic # 1 Polarization: 38.65 SS G_CDS: 0.24 Total: 38.89 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 5.82 Total: 9.81 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -8.39 Total: -116.58 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -0.08 Total: -50.66 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -73.15 -0.39 -73.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754842433.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.754 kcal (2) G-P(sol) polarization free energy of solvation -73.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds