Wall clock time and date at job start Wed Apr 1 2020 05:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00433 * 2 1 4 4 H 1.48501 * 109.47151 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46847 * 300.00316 * 3 2 1 6 6 H 1.48503 * 109.46991 * 59.99726 * 3 2 1 7 7 C 1.38812 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00010 * 173.89717 * 7 2 1 9 9 N 1.36940 * 119.99880 * 353.89667 * 7 2 1 10 10 C 1.46921 * 120.63286 * 321.72904 * 9 7 2 11 11 C 1.53194 * 108.77761 * 233.88607 * 10 9 7 12 12 C 1.53039 * 109.31096 * 305.36489 * 11 10 9 13 13 C 1.53040 * 109.53852 * 61.36487 * 12 11 10 14 14 C 1.53008 * 109.52480 * 178.66779 * 13 12 11 15 15 O 1.42889 * 109.47022 * 185.19500 * 14 13 12 16 16 N 1.46499 * 109.49865 * 58.58731 * 13 12 11 17 17 C 1.34770 * 119.99830 * 60.55553 * 16 13 12 18 18 O 1.21696 * 120.00451 * 355.57455 * 17 16 13 19 19 C 1.46683 * 119.99890 * 175.57296 * 17 16 13 20 20 C 1.38046 * 126.20738 * 179.97438 * 19 17 16 21 21 C 1.39244 * 106.97880 * 179.97438 * 20 19 17 22 22 C 1.35955 * 108.04013 * 0.02913 * 21 20 19 23 23 N 1.35119 * 108.76715 * 359.68657 * 22 21 20 24 24 H 0.96998 * 125.69318 * 180.33806 * 23 22 21 25 25 C 1.51020 * 123.85165 * 179.89802 * 22 21 20 26 26 C 1.53316 * 108.41169 * 343.29855 * 25 22 21 27 27 C 1.53101 * 109.53360 * 50.17673 * 26 25 22 28 28 C 1.50843 * 127.70724 * 180.09394 * 21 20 19 29 29 C 1.46925 * 120.62980 * 142.01228 * 9 7 2 30 30 H 0.97004 * 119.99556 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.58758 * 353.66997 * 10 9 7 32 32 H 1.08991 * 109.58933 * 114.09418 * 10 9 7 33 33 H 1.08992 * 109.50103 * 185.41201 * 11 10 9 34 34 H 1.09003 * 109.49961 * 65.31242 * 11 10 9 35 35 H 1.09003 * 109.46090 * 301.34601 * 12 11 10 36 36 H 1.08998 * 109.46363 * 181.38748 * 12 11 10 37 37 H 1.08995 * 109.46788 * 305.19957 * 14 13 12 38 38 H 1.09003 * 109.46696 * 65.19067 * 14 13 12 39 39 H 0.96708 * 114.00276 * 180.02562 * 15 14 13 40 40 H 0.97000 * 119.99529 * 240.54907 * 16 13 12 41 41 H 1.08009 * 126.51065 * 359.97438 * 20 19 17 42 42 H 1.09004 * 109.68056 * 223.56727 * 25 22 21 43 43 H 1.09008 * 109.70942 * 103.04922 * 25 22 21 44 44 H 1.09001 * 109.46313 * 290.15236 * 26 25 22 45 45 H 1.09007 * 109.45920 * 170.19458 * 26 25 22 46 46 H 1.08996 * 109.47985 * 169.60773 * 27 26 25 47 47 H 1.09005 * 109.47271 * 49.60219 * 27 26 25 48 48 H 1.08995 * 109.68269 * 283.16740 * 28 21 20 49 49 H 1.09000 * 109.68011 * 43.67848 * 28 21 20 50 50 H 1.09003 * 109.58630 * 245.90221 * 29 9 7 51 51 H 1.09009 * 109.58916 * 6.18392 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0856 -1.2049 -0.0989 9 7 1.3313 -2.3847 0.1272 10 6 0.1751 -2.4914 1.0275 11 6 0.4042 -3.6630 1.9876 12 6 0.6908 -4.9307 1.1797 13 6 1.9604 -4.7319 0.3485 14 6 2.2651 -6.0112 -0.4336 15 8 3.5135 -5.8676 -1.1138 16 7 3.0833 -4.4230 1.2373 17 6 3.4590 -5.3087 2.1811 18 8 2.8165 -6.3285 2.3489 19 6 4.6424 -5.0434 3.0062 20 6 5.1398 -5.8572 4.0042 21 6 6.2669 -5.2239 4.5213 22 6 6.4399 -4.0558 3.8475 23 7 5.4631 -3.9396 2.9212 24 1 5.3561 -3.2013 2.3012 25 6 7.5615 -3.0831 4.1243 26 6 8.1617 -3.4137 5.4958 27 6 8.4784 -4.9098 5.5689 28 6 7.1695 -5.7066 5.6294 29 6 1.7489 -3.5725 -0.6301 30 1 -0.4850 0.8401 -0.0004 31 1 0.0688 -1.5679 1.5968 32 1 -0.7278 -2.6688 0.4433 33 1 -0.4868 -3.8136 2.5969 34 1 1.2544 -3.4432 2.6334 35 1 -0.1491 -5.1361 0.5160 36 1 0.8299 -5.7711 1.8597 37 1 2.3217 -6.8536 0.2557 38 1 1.4732 -6.1895 -1.1611 39 1 3.7708 -6.6427 -1.6317 40 1 3.5564 -3.5811 1.1463 41 1 4.7320 -6.8051 4.3234 42 1 7.1715 -2.0652 4.1300 43 1 8.3285 -3.1779 3.3555 44 1 7.4468 -3.1552 6.2770 45 1 9.0782 -2.8410 5.6387 46 1 9.0691 -5.1131 6.4620 47 1 9.0432 -5.2052 4.6846 48 1 6.6860 -5.5458 6.5929 49 1 7.3787 -6.7680 5.4963 50 1 0.9743 -3.8382 -1.3495 51 1 2.6798 -3.3615 -1.1566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754862128.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:55 Heat of formation + Delta-G solvation = -58.415225 kcal Electronic energy + Delta-G solvation = -32375.721482 eV Core-core repulsion = 28274.341628 eV Total energy + Delta-G solvation = -4101.379854 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.58027 -41.20114 -38.84158 -37.41964 -37.11266 -35.51180 -34.01016 -33.07124 -32.34679 -31.70341 -30.01894 -29.40700 -27.32329 -26.62685 -25.21532 -24.00355 -23.38790 -22.58534 -22.16068 -21.08417 -20.27702 -19.35514 -19.28978 -18.66922 -18.19101 -16.97003 -16.93923 -16.64512 -16.36760 -15.82970 -15.73338 -15.50954 -15.14100 -14.84471 -14.74407 -14.70546 -14.62670 -14.36452 -14.26135 -14.03898 -13.85859 -13.47845 -13.45169 -13.27741 -13.15477 -12.88810 -12.86792 -12.64352 -12.55599 -12.27320 -12.00472 -11.82217 -11.65314 -11.55241 -11.53334 -11.32868 -11.32048 -11.07690 -10.61834 -10.55164 -9.97033 -9.75128 -8.86045 -8.56278 -7.89282 -5.48676 0.50685 1.44604 1.46596 1.55720 1.72241 2.09736 2.23281 2.44094 2.47450 3.26784 3.29026 3.62642 3.76000 3.80599 3.99826 4.02658 4.08970 4.09743 4.22599 4.23163 4.32774 4.42434 4.50872 4.54522 4.58641 4.68958 4.70801 4.73590 4.76066 4.84049 4.87070 4.97291 4.99708 5.04375 5.10739 5.14477 5.14839 5.22278 5.27360 5.36303 5.40039 5.48594 5.54636 5.59983 5.64005 5.71353 5.90616 6.00420 6.40806 6.46343 6.67275 6.89227 7.14059 7.24939 7.77866 8.37461 9.16411 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009585 B = 0.003867 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.547771 B = 7239.770036 C = 9117.167596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.037 4.037 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.266 4.266 8 H 0.067 0.933 9 N -0.600 5.600 10 C 0.185 3.815 11 C -0.123 4.123 12 C -0.114 4.114 13 C 0.170 3.830 14 C 0.076 3.924 15 O -0.578 6.578 16 N -0.687 5.687 17 C 0.590 3.410 18 O -0.569 6.569 19 C -0.076 4.076 20 C -0.115 4.115 21 C -0.190 4.190 22 C 0.054 3.946 23 N -0.525 5.525 24 H 0.421 0.579 25 C -0.056 4.056 26 C -0.110 4.110 27 C -0.116 4.116 28 C -0.046 4.046 29 C 0.154 3.846 30 H 0.250 0.750 31 H 0.045 0.955 32 H 0.000 1.000 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.392 0.608 40 H 0.397 0.603 41 H 0.140 0.860 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.029 0.971 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.803 -10.374 7.807 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.234 4.234 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.396 4.396 8 H 0.084 0.916 9 N -0.323 5.323 10 C 0.059 3.941 11 C -0.162 4.162 12 C -0.153 4.153 13 C 0.083 3.917 14 C -0.003 4.003 15 O -0.385 6.385 16 N -0.335 5.335 17 C 0.380 3.620 18 O -0.450 6.450 19 C -0.189 4.189 20 C -0.142 4.142 21 C -0.195 4.195 22 C -0.065 4.065 23 N -0.120 5.120 24 H 0.259 0.741 25 C -0.093 4.093 26 C -0.148 4.148 27 C -0.153 4.153 28 C -0.083 4.083 29 C 0.028 3.972 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.019 0.981 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.241 0.759 40 H 0.231 0.769 41 H 0.158 0.842 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.102 0.898 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.047 0.953 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.147 -10.246 8.013 19.965 hybrid contribution -0.398 1.189 -0.947 1.571 sum 14.748 -9.057 7.066 18.694 Atomic orbital electron populations 1.70131 1.06849 1.25843 1.54653 1.26072 0.96080 1.01605 0.99664 0.85250 0.78953 0.79904 0.76563 1.18482 1.22059 1.22027 1.19399 0.90410 0.84168 1.45656 0.91580 1.44079 1.34121 1.07049 1.47010 1.20500 0.88155 0.95150 0.90261 1.21914 1.00139 0.95991 0.98152 1.21710 0.96056 0.98342 0.99157 1.20887 0.85987 0.94967 0.89905 1.22441 0.86339 0.96671 0.94854 1.86443 1.38861 1.45077 1.68126 1.45597 1.33750 1.20286 1.33821 1.17202 0.82748 0.83074 0.79019 1.90684 1.55358 1.28482 1.70476 1.20390 0.98388 0.93436 1.06709 1.21102 0.96979 0.99821 0.96346 1.19588 0.99917 0.96303 1.03718 1.21055 0.93588 0.99004 0.92881 1.41824 1.21983 1.18565 1.29667 0.74069 1.20494 0.93112 0.96028 0.99715 1.21536 1.01420 0.96906 0.94948 1.21589 0.96310 0.94501 1.02898 1.20121 0.93787 0.99703 0.94723 1.21105 0.98275 0.86162 0.91652 0.94090 0.93601 0.98146 0.91893 0.94055 0.91103 0.90797 0.92678 0.91635 0.75897 0.76862 0.84196 0.89881 0.88928 0.91904 0.89047 0.89755 0.91792 0.91038 0.90823 0.95281 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.62 11.33 21.65 0.25 -53.38 16 2 C -0.04 -2.01 5.11 84.86 0.43 -1.57 16 3 Si 0.97 42.95 29.56 68.60 2.03 44.98 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.27 -13.77 9.50 84.03 0.80 -12.97 16 8 H 0.07 3.27 7.84 -2.91 -0.02 3.25 16 9 N -0.60 -28.75 2.84 -699.11 -1.99 -30.74 16 10 C 0.18 8.88 5.22 86.36 0.45 9.33 16 11 C -0.12 -4.93 5.93 30.67 0.18 -4.75 16 12 C -0.11 -4.15 4.48 30.62 0.14 -4.02 16 13 C 0.17 6.05 0.45 3.68 0.00 6.05 16 14 C 0.08 2.32 5.63 71.98 0.41 2.73 16 15 O -0.58 -16.53 13.08 -148.98 -1.95 -18.48 16 16 N -0.69 -24.01 3.94 -426.48 -1.68 -25.69 16 17 C 0.59 21.02 7.20 86.45 0.62 21.64 16 18 O -0.57 -22.42 13.19 -4.34 -0.06 -22.48 16 19 C -0.08 -2.42 7.06 40.36 0.28 -2.14 16 20 C -0.12 -3.42 10.62 22.47 0.24 -3.18 16 21 C -0.19 -4.61 5.91 -20.11 -0.12 -4.73 16 22 C 0.05 1.24 7.02 41.62 0.29 1.53 16 23 N -0.53 -13.81 5.98 -171.30 -1.03 -14.83 16 24 H 0.42 10.05 8.20 -92.71 -0.76 9.29 16 25 C -0.06 -0.87 6.30 30.06 0.19 -0.68 16 26 C -0.11 -1.38 5.89 30.73 0.18 -1.20 16 27 C -0.12 -1.48 5.90 30.75 0.18 -1.30 16 28 C -0.05 -0.80 6.28 30.01 0.19 -0.61 16 29 C 0.15 6.32 5.07 86.36 0.44 6.75 16 30 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 31 H 0.05 2.49 6.50 -2.39 -0.02 2.47 16 32 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.04 1.74 7.53 -2.39 -0.02 1.72 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.07 2.76 6.10 -2.39 -0.01 2.74 16 37 H 0.06 1.78 6.44 -2.39 -0.02 1.76 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.39 7.32 9.12 -74.05 -0.68 6.65 16 40 H 0.40 14.01 7.59 -92.71 -0.70 13.30 16 41 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 42 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.06 0.87 8.11 -2.39 -0.02 0.85 16 45 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 46 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.06 0.84 8.11 -2.38 -0.02 0.82 16 48 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 51 H 0.06 2.54 7.78 -2.38 -0.02 2.52 16 Total: -1.00 -67.49 394.07 -0.69 -68.18 By element: Atomic # 1 Polarization: 42.72 SS G_CDS: -1.17 Total: 41.55 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 4.91 Total: 10.88 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -4.44 Total: -124.63 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -2.01 Total: -40.96 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -67.49 -0.69 -68.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754862128.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.765 kcal (2) G-P(sol) polarization free energy of solvation -67.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds