Wall clock time and date at job start Wed Apr 1 2020 05:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52998 * 109.47282 * 299.99654 * 6 5 4 8 8 C 1.53003 * 109.47218 * 59.99579 * 6 5 4 9 9 C 1.52999 * 109.47331 * 179.97438 * 6 5 4 10 10 N 1.46500 * 109.47528 * 179.97438 * 9 6 5 11 11 C 1.46496 * 120.00048 * 270.00534 * 10 9 6 12 12 C 1.34781 * 119.99823 * 89.99675 * 10 9 6 13 13 O 1.21582 * 119.99995 * 0.02562 * 12 10 9 14 14 N 1.34775 * 119.99622 * 180.02562 * 12 10 9 15 15 C 1.46504 * 119.99618 * 180.02562 * 14 12 10 16 16 C 1.50704 * 109.47146 * 179.97438 * 15 14 12 17 17 O 1.21293 * 119.99891 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00191 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00233 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99569 * 359.97438 * 19 18 16 21 21 C 1.38939 * 120.00168 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00255 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00087 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47186 * 59.99559 * 23 21 19 25 25 H 1.48504 * 109.47415 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46915 * 299.99516 * 23 21 19 27 27 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 28 28 C 1.38234 * 120.00033 * 0.49775 * 27 5 4 29 29 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 30 30 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 31 31 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 32 32 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 34 34 H 1.08994 * 109.47122 * 59.99428 * 7 6 5 35 35 H 1.08990 * 109.47488 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.46885 * 299.99961 * 7 6 5 37 37 H 1.08995 * 109.47325 * 59.99840 * 8 6 5 38 38 H 1.09003 * 109.47092 * 180.02562 * 8 6 5 39 39 H 1.09001 * 109.46873 * 299.99885 * 8 6 5 40 40 H 1.09001 * 109.47089 * 300.00304 * 9 6 5 41 41 H 1.09001 * 109.47054 * 59.99906 * 9 6 5 42 42 H 1.09001 * 109.47632 * 89.99911 * 11 10 9 43 43 H 1.09002 * 109.47059 * 209.99729 * 11 10 9 44 44 H 1.09001 * 109.47406 * 329.99172 * 11 10 9 45 45 H 0.96993 * 120.00537 * 359.97438 * 14 12 10 46 46 H 1.08998 * 109.47334 * 299.99467 * 15 14 12 47 47 H 1.09003 * 109.47124 * 60.00123 * 15 14 12 48 48 H 0.97004 * 119.99688 * 359.97438 * 18 16 15 49 49 H 0.97006 * 120.00006 * 180.02562 * 22 21 19 50 50 H 1.07999 * 119.99934 * 180.25938 * 27 5 4 51 51 H 1.08001 * 120.00294 * 179.76453 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2840 0.7236 -1.2599 8 6 6.2934 0.7188 1.2385 9 6 6.2887 -1.4425 -0.0142 10 7 7.7537 -1.4426 -0.0204 11 6 8.4808 -1.4408 -1.2922 12 6 8.4324 -1.4442 1.1440 13 8 7.8289 -1.4460 2.1995 14 7 9.7802 -1.4437 1.1383 15 6 10.5180 -1.4460 2.4040 16 6 11.9985 -1.4456 2.1224 17 8 12.3980 -1.4431 0.9772 18 7 12.8786 -1.4480 3.1431 19 6 14.2254 -1.4471 2.8870 20 1 14.5811 -1.4449 1.8672 21 6 15.1327 -1.4500 3.9392 22 7 14.6999 -1.4532 5.1801 23 14 16.9678 -1.4481 3.5902 24 1 17.3227 -0.2330 2.8139 25 1 17.7158 -1.4525 4.8732 26 1 17.3238 -2.6580 2.8062 27 6 3.5805 -1.1972 0.0010 28 6 2.1982 -1.1972 0.0009 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1325 0.0001 34 1 5.9206 1.7511 -1.2566 35 1 7.3739 0.7232 -1.2643 36 1 5.9173 0.2114 -2.1495 37 1 5.9335 0.2034 2.1289 38 1 7.3835 0.7192 1.2342 39 1 5.9301 1.7465 1.2418 40 1 5.9287 -1.9577 0.8763 41 1 5.9220 -1.9550 -0.9036 42 1 8.6613 -0.4127 -1.6062 43 1 9.4338 -1.9548 -1.1665 44 1 7.8886 -1.9536 -2.0501 45 1 10.2616 -1.4426 0.2963 46 1 10.2569 -0.5572 2.9784 47 1 10.2573 -2.3372 2.9749 48 1 12.5590 -1.4495 4.0590 49 1 15.3334 -1.4549 5.9147 50 1 4.1205 -2.1325 0.0013 51 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358307405.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:45 Heat of formation + Delta-G solvation = -43.182595 kcal Electronic energy + Delta-G solvation = -30395.642765 eV Core-core repulsion = 26294.923447 eV Total energy + Delta-G solvation = -4100.719318 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.69713 -39.64487 -38.28947 -36.93465 -34.74638 -34.34957 -33.57173 -31.76659 -31.36920 -31.23582 -28.24251 -27.82520 -27.03844 -26.77029 -25.51429 -24.23335 -22.53756 -22.07862 -20.04143 -19.64369 -19.07537 -18.23410 -17.75035 -17.05782 -16.20583 -15.73810 -15.56502 -15.33559 -15.07225 -14.71088 -14.56772 -14.31645 -14.29481 -13.94509 -13.74664 -13.67609 -13.49309 -13.39371 -13.29510 -13.16092 -12.60929 -12.52179 -12.32949 -12.10010 -11.99133 -11.88216 -11.69653 -11.62224 -11.58871 -11.49121 -11.09858 -10.97228 -10.90722 -10.71407 -10.50351 -10.30684 -9.87913 -9.61853 -9.09961 -8.85292 -8.64834 -8.61369 -8.42415 -8.09001 -6.50407 -3.92560 1.15292 1.22347 2.74884 3.14168 3.21940 3.25728 3.40089 3.55384 3.76360 4.03187 4.19341 4.47600 4.52258 4.70165 4.76101 4.79968 4.82672 4.90650 5.03221 5.09630 5.14152 5.18238 5.26160 5.28202 5.29690 5.42102 5.46506 5.52005 5.56261 5.62010 5.69159 5.78695 5.85899 5.87807 5.93074 5.94481 6.00132 6.02846 6.09468 6.10261 6.26266 6.39010 6.43152 6.48294 6.53961 6.79666 6.83043 7.05412 7.46490 7.93149 8.19078 8.46290 8.82077 9.05443 9.40578 9.88538 10.66347 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029850 B = 0.001783 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.809914 B =15702.959737 C =15967.915046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.119 4.119 4 C -0.109 4.109 5 C -0.064 4.064 6 C -0.042 4.042 7 C -0.140 4.140 8 C -0.126 4.126 9 C 0.145 3.855 10 N -0.631 5.631 11 C 0.075 3.925 12 C 0.706 3.294 13 O -0.590 6.590 14 N -0.725 5.725 15 C 0.128 3.872 16 C 0.429 3.571 17 O -0.599 6.599 18 N -0.549 5.549 19 C -0.306 4.306 20 H 0.105 0.895 21 C 0.026 3.974 22 N -0.894 5.894 23 Si 0.934 3.066 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.273 1.273 27 C -0.119 4.119 28 C -0.117 4.117 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.406 0.594 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.396 0.604 49 H 0.275 0.725 50 H 0.125 0.875 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.805 2.787 -11.839 27.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.137 4.137 4 C -0.127 4.127 5 C -0.065 4.065 6 C -0.043 4.043 7 C -0.197 4.197 8 C -0.183 4.183 9 C 0.021 3.979 10 N -0.369 5.369 11 C -0.068 4.068 12 C 0.407 3.593 13 O -0.469 6.469 14 N -0.384 5.384 15 C -0.001 4.001 16 C 0.214 3.786 17 O -0.486 6.486 18 N -0.184 5.184 19 C -0.435 4.435 20 H 0.122 0.878 21 C -0.177 4.177 22 N -0.535 5.535 23 Si 0.760 3.240 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.198 1.198 27 C -0.137 4.137 28 C -0.135 4.135 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.246 0.754 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.230 0.770 49 H 0.084 0.916 50 H 0.143 0.857 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -24.808 2.773 -11.613 27.532 hybrid contribution 1.014 0.055 0.050 1.017 sum -23.794 2.828 -11.563 26.606 Atomic orbital electron populations 1.20774 0.91451 1.02653 1.02114 1.19893 0.95920 0.93304 1.00536 1.20987 0.94118 0.97412 1.01176 1.20949 0.93904 0.97723 1.00167 1.19750 0.94565 0.93202 0.98960 1.19951 0.90404 0.96915 0.97069 1.21995 1.01699 0.99887 0.96106 1.21814 1.01390 0.98763 0.96367 1.21472 0.78257 0.95298 1.02880 1.46886 1.06094 1.79048 1.04860 1.21874 0.97367 1.01924 0.85663 1.15754 0.81736 0.77993 0.83804 1.90904 1.68127 1.58316 1.29514 1.44958 1.04177 1.78771 1.10510 1.20775 0.90669 1.03064 0.85544 1.19774 0.87053 0.85474 0.86265 1.90483 1.79514 1.57420 1.21155 1.41779 1.06155 1.62652 1.07768 1.19675 0.80420 1.48389 0.95040 0.87753 1.25317 1.00959 0.96800 0.94606 1.69611 1.36174 1.49249 0.98422 0.85873 0.81428 0.79120 0.77531 1.19803 1.20863 1.19807 1.21151 0.94116 0.97890 1.00535 1.21007 0.94155 0.97425 1.00949 0.91388 0.91657 0.91706 0.86346 0.86200 0.92670 0.91553 0.92738 0.91697 0.92197 0.93503 0.89432 0.90626 0.92386 0.91019 0.90997 0.75439 0.90085 0.90099 0.77018 0.91551 0.85723 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.10 -0.82 5.88 -104.62 -0.62 -1.43 16 3 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 4 C -0.11 -1.03 8.71 -39.58 -0.34 -1.38 16 5 C -0.06 -0.64 4.76 -104.63 -0.50 -1.14 16 6 C -0.04 -0.43 0.67 -155.66 -0.10 -0.54 16 7 C -0.14 -1.26 7.69 37.16 0.29 -0.98 16 8 C -0.13 -1.59 6.95 37.16 0.26 -1.33 16 9 C 0.14 1.55 3.28 -4.04 -0.01 1.53 16 10 N -0.63 -7.73 2.40 -187.35 -0.45 -8.18 16 11 C 0.08 0.72 9.23 59.84 0.55 1.27 16 12 C 0.71 11.37 6.69 -86.92 -0.58 10.79 16 13 O -0.59 -11.08 14.11 5.29 0.07 -11.00 16 14 N -0.73 -12.31 5.39 -66.41 -0.36 -12.67 16 15 C 0.13 2.40 6.15 -5.19 -0.03 2.36 16 16 C 0.43 9.84 7.85 -10.98 -0.09 9.76 16 17 O -0.60 -15.24 15.24 5.55 0.08 -15.16 16 18 N -0.55 -13.62 5.29 -10.96 -0.06 -13.68 16 19 C -0.31 -8.30 9.68 -14.94 -0.14 -8.45 16 20 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 21 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 22 N -0.89 -23.88 13.05 55.49 0.72 -23.16 16 23 Si 0.93 20.52 29.55 -169.99 -5.02 15.49 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 C -0.12 -1.12 8.98 -39.58 -0.36 -1.47 16 28 C -0.12 -1.02 9.70 -39.58 -0.38 -1.41 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 31 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.12 1.02 7.10 -52.49 -0.37 0.65 16 34 H 0.05 0.48 7.39 -51.93 -0.38 0.09 16 35 H 0.07 0.64 5.33 -51.93 -0.28 0.36 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.94 7.73 -51.93 -0.40 0.53 16 38 H 0.06 0.87 6.15 -51.93 -0.32 0.55 16 39 H 0.05 0.53 7.39 -51.93 -0.38 0.14 16 40 H 0.09 1.08 6.78 -51.93 -0.35 0.73 16 41 H 0.08 0.64 7.27 -51.93 -0.38 0.26 16 42 H 0.06 0.52 6.26 -51.93 -0.33 0.19 16 43 H 0.07 0.75 6.36 -51.93 -0.33 0.42 16 44 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 45 H 0.41 6.77 5.17 -40.82 -0.21 6.56 16 46 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 47 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 48 H 0.40 9.48 7.90 -40.82 -0.32 9.16 16 49 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 50 H 0.12 1.04 5.90 -52.49 -0.31 0.73 16 51 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 402.75 15.07 6.07 6.07 Total: -1.00 -31.49 402.75 -8.78 -40.27 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -7.66 Total: 15.56 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -2.18 Total: 6.44 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.14 Total: -57.68 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: 0.16 Total: -26.16 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.49 -8.78 -40.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358307405.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.910 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds