Wall clock time and date at job start Wed Apr 1 2020 05:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52998 * 109.47282 * 299.99654 * 6 5 4 8 8 C 1.53003 * 109.47218 * 59.99579 * 6 5 4 9 9 C 1.52999 * 109.47331 * 179.97438 * 6 5 4 10 10 N 1.46500 * 109.47528 * 179.97438 * 9 6 5 11 11 C 1.46496 * 120.00048 * 270.00534 * 10 9 6 12 12 C 1.34781 * 119.99823 * 89.99675 * 10 9 6 13 13 O 1.21582 * 119.99995 * 0.02562 * 12 10 9 14 14 N 1.34775 * 119.99622 * 180.02562 * 12 10 9 15 15 C 1.46504 * 119.99618 * 180.02562 * 14 12 10 16 16 C 1.50704 * 109.47146 * 179.97438 * 15 14 12 17 17 O 1.21293 * 119.99891 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00191 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00233 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99569 * 359.97438 * 19 18 16 21 21 C 1.38939 * 120.00168 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00255 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00087 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47186 * 59.99559 * 23 21 19 25 25 H 1.48504 * 109.47415 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46915 * 299.99516 * 23 21 19 27 27 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 28 28 C 1.38234 * 120.00033 * 0.49775 * 27 5 4 29 29 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 30 30 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 31 31 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 32 32 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 34 34 H 1.08994 * 109.47122 * 59.99428 * 7 6 5 35 35 H 1.08990 * 109.47488 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.46885 * 299.99961 * 7 6 5 37 37 H 1.08995 * 109.47325 * 59.99840 * 8 6 5 38 38 H 1.09003 * 109.47092 * 180.02562 * 8 6 5 39 39 H 1.09001 * 109.46873 * 299.99885 * 8 6 5 40 40 H 1.09001 * 109.47089 * 300.00304 * 9 6 5 41 41 H 1.09001 * 109.47054 * 59.99906 * 9 6 5 42 42 H 1.09001 * 109.47632 * 89.99911 * 11 10 9 43 43 H 1.09002 * 109.47059 * 209.99729 * 11 10 9 44 44 H 1.09001 * 109.47406 * 329.99172 * 11 10 9 45 45 H 0.96993 * 120.00537 * 359.97438 * 14 12 10 46 46 H 1.08998 * 109.47334 * 299.99467 * 15 14 12 47 47 H 1.09003 * 109.47124 * 60.00123 * 15 14 12 48 48 H 0.97004 * 119.99688 * 359.97438 * 18 16 15 49 49 H 0.97006 * 120.00006 * 180.02562 * 22 21 19 50 50 H 1.07999 * 119.99934 * 180.25938 * 27 5 4 51 51 H 1.08001 * 120.00294 * 179.76453 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2840 0.7236 -1.2599 8 6 6.2934 0.7188 1.2385 9 6 6.2887 -1.4425 -0.0142 10 7 7.7537 -1.4426 -0.0204 11 6 8.4808 -1.4408 -1.2922 12 6 8.4324 -1.4442 1.1440 13 8 7.8289 -1.4460 2.1995 14 7 9.7802 -1.4437 1.1383 15 6 10.5180 -1.4460 2.4040 16 6 11.9985 -1.4456 2.1224 17 8 12.3980 -1.4431 0.9772 18 7 12.8786 -1.4480 3.1431 19 6 14.2254 -1.4471 2.8870 20 1 14.5811 -1.4449 1.8672 21 6 15.1327 -1.4500 3.9392 22 7 14.6999 -1.4532 5.1801 23 14 16.9678 -1.4481 3.5902 24 1 17.3227 -0.2330 2.8139 25 1 17.7158 -1.4525 4.8732 26 1 17.3238 -2.6580 2.8062 27 6 3.5805 -1.1972 0.0010 28 6 2.1982 -1.1972 0.0009 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1325 0.0001 34 1 5.9206 1.7511 -1.2566 35 1 7.3739 0.7232 -1.2643 36 1 5.9173 0.2114 -2.1495 37 1 5.9335 0.2034 2.1289 38 1 7.3835 0.7192 1.2342 39 1 5.9301 1.7465 1.2418 40 1 5.9287 -1.9577 0.8763 41 1 5.9220 -1.9550 -0.9036 42 1 8.6613 -0.4127 -1.6062 43 1 9.4338 -1.9548 -1.1665 44 1 7.8886 -1.9536 -2.0501 45 1 10.2616 -1.4426 0.2963 46 1 10.2569 -0.5572 2.9784 47 1 10.2573 -2.3372 2.9749 48 1 12.5590 -1.4495 4.0590 49 1 15.3334 -1.4549 5.9147 50 1 4.1205 -2.1325 0.0013 51 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358307405.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:44 Heat of formation + Delta-G solvation = -61.846472 kcal Electronic energy + Delta-G solvation = -30396.452091 eV Core-core repulsion = 26294.923447 eV Total energy + Delta-G solvation = -4101.528644 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.73474 -40.64623 -39.99556 -37.90824 -36.23654 -35.75716 -35.04149 -33.36163 -32.43123 -31.92494 -29.51415 -28.84680 -28.03367 -27.42316 -26.84908 -25.77420 -23.27499 -22.79595 -21.40562 -21.14590 -20.22262 -19.91311 -19.10276 -17.92858 -17.47847 -17.24199 -16.80541 -16.52179 -16.22518 -15.97803 -15.84301 -15.65131 -15.37377 -15.09088 -14.74051 -14.67935 -14.40454 -14.35538 -14.15306 -14.00174 -13.93683 -13.61684 -13.52964 -13.29908 -13.03699 -12.99632 -12.88649 -12.64969 -12.52625 -12.46304 -12.42745 -12.28414 -12.13261 -11.80785 -11.67067 -11.55581 -11.49478 -11.17581 -10.54782 -10.22130 -10.08368 -9.76926 -9.48180 -9.31786 -8.50086 -6.00555 0.47784 0.55356 1.38658 1.42781 1.52890 1.60655 1.90520 2.15073 2.28764 2.87858 2.89318 3.17036 3.19379 3.70998 3.76115 3.94180 4.10548 4.12092 4.19059 4.21291 4.26945 4.31198 4.42685 4.46083 4.54038 4.55885 4.60629 4.62771 4.72558 4.79362 4.84927 4.86163 4.86505 4.96808 5.01683 5.02767 5.11698 5.24010 5.28459 5.33043 5.37563 5.39053 5.43686 5.49023 5.65743 5.75980 5.77349 5.91275 5.92981 6.18153 6.48562 6.94308 7.03873 7.43160 7.56200 7.94846 8.66497 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029850 B = 0.001783 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.809914 B =15702.959737 C =15967.915046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.103 4.103 3 C -0.128 4.128 4 C -0.120 4.120 5 C -0.077 4.077 6 C -0.034 4.034 7 C -0.135 4.135 8 C -0.118 4.118 9 C 0.143 3.857 10 N -0.622 5.622 11 C 0.070 3.930 12 C 0.703 3.297 13 O -0.621 6.621 14 N -0.727 5.727 15 C 0.142 3.858 16 C 0.434 3.566 17 O -0.623 6.623 18 N -0.559 5.559 19 C -0.338 4.338 20 H 0.087 0.913 21 C -0.010 4.010 22 N -0.916 5.916 23 Si 0.998 3.002 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.270 1.270 27 C -0.129 4.129 28 C -0.126 4.126 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.036 0.964 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.103 0.897 45 H 0.409 0.591 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.398 0.602 49 H 0.280 0.720 50 H 0.132 0.868 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.951 2.801 -13.215 29.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.103 4.103 3 C -0.145 4.145 4 C -0.138 4.138 5 C -0.077 4.077 6 C -0.035 4.035 7 C -0.192 4.192 8 C -0.175 4.175 9 C 0.021 3.979 10 N -0.358 5.358 11 C -0.072 4.072 12 C 0.405 3.595 13 O -0.502 6.502 14 N -0.387 5.387 15 C 0.014 3.986 16 C 0.221 3.779 17 O -0.511 6.511 18 N -0.194 5.194 19 C -0.468 4.468 20 H 0.105 0.895 21 C -0.211 4.211 22 N -0.556 5.556 23 Si 0.821 3.179 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.195 1.195 27 C -0.147 4.147 28 C -0.144 4.144 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.122 0.878 45 H 0.248 0.752 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.232 0.768 49 H 0.089 0.911 50 H 0.149 0.851 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -25.989 2.787 -13.020 29.201 hybrid contribution 1.250 0.062 0.450 1.329 sum -24.739 2.849 -12.570 27.896 Atomic orbital electron populations 1.20815 0.89740 1.03371 1.02949 1.20241 0.97323 0.93116 0.99576 1.21247 0.93999 0.98389 1.00912 1.21093 0.94489 0.97780 1.00396 1.19730 0.94089 0.93763 1.00165 1.19835 0.90941 0.96333 0.96439 1.21952 1.01238 1.00152 0.95873 1.21705 0.99721 0.99391 0.96728 1.21614 0.77114 0.95816 1.03392 1.46931 1.06732 1.77599 1.04580 1.22090 0.97315 1.02926 0.84913 1.15877 0.81258 0.77815 0.84574 1.90883 1.68513 1.59718 1.31067 1.44891 1.04607 1.79369 1.09797 1.20548 0.87708 1.03758 0.86632 1.20400 0.88514 0.83520 0.85475 1.90457 1.80520 1.58023 1.22144 1.41828 1.05917 1.63442 1.08238 1.19713 0.81821 1.50514 0.94713 0.89488 1.26133 1.05009 0.95760 0.94214 1.69682 1.37662 1.49211 0.99035 0.84918 0.76141 0.79094 0.77757 1.19482 1.19678 1.19473 1.21314 0.94692 0.97999 1.00651 1.21275 0.94073 0.98392 1.00684 0.90396 0.90974 0.91011 0.84761 0.85785 0.92330 0.92139 0.91196 0.94194 0.94479 0.92604 0.91341 0.87601 0.91446 0.91913 0.87827 0.75184 0.89383 0.89297 0.76757 0.91092 0.85057 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 71.24 0.71 -0.39 16 2 C -0.10 -1.56 5.88 -19.86 -0.12 -1.67 16 3 C -0.13 -2.03 9.70 22.27 0.22 -1.82 16 4 C -0.12 -2.13 8.71 22.27 0.19 -1.94 16 5 C -0.08 -1.45 4.76 -19.87 -0.09 -1.55 16 6 C -0.03 -0.67 0.67 -52.93 -0.04 -0.71 16 7 C -0.14 -2.21 7.69 71.98 0.55 -1.65 16 8 C -0.12 -3.02 6.95 71.98 0.50 -2.52 16 9 C 0.14 2.91 3.28 86.38 0.28 3.20 16 10 N -0.62 -14.67 2.40 -864.92 -2.07 -16.74 16 11 C 0.07 1.21 9.23 127.77 1.18 2.39 16 12 C 0.70 22.69 6.69 179.05 1.20 23.89 16 13 O -0.62 -23.75 14.11 -3.98 -0.06 -23.80 16 14 N -0.73 -24.76 5.39 -482.28 -2.60 -27.36 16 15 C 0.14 5.38 6.15 85.63 0.53 5.90 16 16 C 0.43 20.23 7.85 87.66 0.69 20.92 16 17 O -0.62 -32.18 15.24 -3.07 -0.05 -32.23 16 18 N -0.56 -28.30 5.29 -306.99 -1.62 -29.92 16 19 C -0.34 -18.69 9.68 84.04 0.81 -17.87 16 20 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 21 C -0.01 -0.55 5.50 84.92 0.47 -0.08 16 22 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16 23 Si 1.00 41.77 29.55 68.60 2.03 43.79 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 25 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 27 C -0.13 -2.26 8.98 22.27 0.20 -2.06 16 28 C -0.13 -2.00 9.70 22.27 0.22 -1.78 16 29 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 31 H 0.07 0.61 8.09 -2.39 -0.02 0.59 16 32 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.12 2.01 7.10 -2.91 -0.02 1.99 16 34 H 0.06 0.92 7.39 -2.39 -0.02 0.90 16 35 H 0.06 1.06 5.33 -2.39 -0.01 1.05 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.04 1.20 7.73 -2.39 -0.02 1.18 16 38 H 0.04 1.10 6.15 -2.39 -0.01 1.08 16 39 H 0.05 1.27 7.39 -2.39 -0.02 1.25 16 40 H 0.07 1.69 6.78 -2.39 -0.02 1.67 16 41 H 0.11 1.52 7.27 -2.39 -0.02 1.50 16 42 H 0.07 1.08 6.26 -2.39 -0.01 1.07 16 43 H 0.06 1.23 6.36 -2.39 -0.02 1.22 16 44 H 0.10 1.16 7.89 -2.39 -0.02 1.15 16 45 H 0.41 13.60 5.17 -92.71 -0.48 13.12 16 46 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 47 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 48 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 49 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 50 H 0.13 2.02 5.90 -2.91 -0.02 2.00 16 51 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -68.21 402.75 3.16 -65.05 By element: Atomic # 1 Polarization: 47.82 SS G_CDS: -0.25 Total: 47.57 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 7.50 Total: 22.24 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -6.02 Total: -122.62 kcal Atomic # 8 Polarization: -55.93 SS G_CDS: -0.10 Total: -56.03 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -68.21 3.16 -65.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358307405.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.202 kcal (2) G-P(sol) polarization free energy of solvation -68.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds